Bug 25710

Summary:	New Ebuild: app-sci/bioconductor
Product:	Gentoo Linux	Reporter:	Gontran Zepeda <gontran>
Component:	New packages	Assignee:	Default Assignee for New Packages <maintainer-wanted>
Status:	RESOLVED WONTFIX
Severity:	enhancement	CC:	sci-biology
Priority:	High	Keywords:	EBUILD
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:	25711
Bug Blocks:
Attachments:	app-sci/bioconductor-1.2.ebuild A tar.bz2 file containing the dev-R portage directory.

Description Gontran Zepeda 2003-08-01 09:21:59 UTC

Bioconductor is an open source and open development software project
for the analysis and comprehension of genomic data.

Will add a couple of dependencies needed to bootstrap bioconductor into
place using the sandbox.

Comment 1 Gontran Zepeda 2003-08-01 09:22:47 UTC

Created attachment 15321 [details]
app-sci/bioconductor-1.2.ebuild

Comment 2 Brady Catherman 2006-01-13 08:51:29 UTC

Created attachment 77002 [details]
A tar.bz2 file containing the dev-R portage directory.

When building this package I took a totally different approach. I creaded a dev-perl like system of packages so users could pick and choose every package that they wanted.

I have some of the CRAN packages and most of the bioconductor packages working. The only one that is currently broken is RGtk because it seems to want to fail to find the gtk-config or pkg-config programs.

Comment 3 Carsten Lohrke (RETIRED) gentoo-dev

2006-02-12 17:15:18 UTC

(In reply to comment #2)
> Created an attachment (id=77002) [edit]
> A tar.bz2 file containing the dev-R portage directory.

Don't do that. We don't even look at attached tarballs. Plain text attachments, please.

Comment 4 Jakub Moc (RETIRED) gentoo-dev

2007-09-14 14:26:27 UTC

Either find a maintainer, or if you want to maintain it yourself, feel free to reopen and join project sunrise, details here:

http://www.gentoo.org/proj/en/sunrise

The ebuild here needs updating as well, current version is 2.0 

Thanks. WONTFIX meanwhile.