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Bug 253996

Summary: sci-biology/tigr-closure-svn: TIGR closure tools for the assembly/finishing stage of DNA sequencing projects
Product: Gentoo Linux Reporter: Martin Mokrejš <mmokrejs>
Component: New packagesAssignee: Default Assignee for New Packages <maintainer-wanted>
Status: CONFIRMED ---    
Severity: enhancement CC: sci-biology
Priority: High Keywords: EBUILD
Version: unspecified   
Hardware: All   
OS: Linux   
URL: http://tigr-closure.sourceforge.net
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: tigr-closure-svn-20080106.ebuild
tigr-closure-20080106.ebuild

Description Martin Mokrejš 2009-01-06 18:22:55 UTC
I tried to come up with an ebuild for this but the installation needs one to understand how perl, java-servlet apps should be installed on Gentoo. Maybe somebody would catch up and contribute few bits?
Comment 1 Martin Mokrejš 2009-01-06 18:23:54 UTC
Created attachment 177588 [details]
tigr-closure-svn-20080106.ebuild

An ebuild just to get started but not working at all.
Comment 2 Martin Mokrejš 2009-01-07 01:00:18 UTC
Created attachment 177624 [details]
tigr-closure-20080106.ebuild

A bit of improvement as I learned how to install some perl packages. However, it seems the svn repository is missing some files. The homepage states the CVS reporsitory is outdated ... but CVS repository contains completely different stuff compared to SVN. See here: http://www.mirrorservice.org/sites/download.sourceforge.net/pub/sourceforge/t/ti/tigr-closure/
and compare to:
http://www.mirrorservice.org/sites/download.sourceforge.net/pub/sourceforge/t/ti/tigr-*

Probably will have to contact upstream.