| Summary: | app-portage/gentoolkit should depend on dev-lang/python[xml] | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Lizel <lizel> |
| Component: | Current packages | Assignee: | Portage Tools Team <tools-portage> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | chris, me, mephinet, mike.gualtieri, python, radek, uhlar, wschlich |
| Priority: | High | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | All | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
emerge --info Portage 2.1.4.4 (default/linux/x86/2008.0, gcc-4.1.2, glibc-2.4-r3, 2.6.22-gentoo-r2 i686) ================================================================= System uname: 2.6.22-gentoo-r2 i686 Intel(R) Pentium(R) D CPU 3.00GHz Timestamp of tree: Mon, 04 Aug 2008 20:04:01 +0000 app-shells/bash: 3.2_p33 dev-java/java-config: 1.3.7, 2.1.6 dev-lang/python: 2.4.4-r13, 2.5.2-r6 dev-python/pycrypto: 2.0.1-r6 sys-apps/baselayout: 1.12.4-r7 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.13, 2.61-r2 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.3.13-r3 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.11-r2 ACCEPT_KEYWORDS="x86" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -pipe -march=pentium3 -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /var/bind" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php4/ext-active/ /etc/php/apache2-php5/ext-active/ /e hp4/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php4/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/w CXXFLAGS="-O2 -pipe -march=pentium3 -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FEATURES="distlocks metadata-transfer parallel-fetch sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="http://ftp.belnet.be/mirror/rsync.gentoo.org/gentoo/ http://gentoo.mirrors.tds.net/gentoo/" LDFLAGS="-Wl,-O1" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local" SYNC="rsync://rsync.belnet.be/gentoo-portage" USE="acl apache2 berkdb bzip2 cli cracklib crypt doc dri exiscan-acl fam fortran gdbm iconv ipv6 isdnlog java jikes libg++ mailwrapper midi mmx mudflap nptl nptlonly openmp pam pcre perl postgres pppd python readline reflection session spell spl sse ssl sysfs tcpd threads unicode x86 xorg zlib" ALSA_CAR als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-a via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_ ulti null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_d ault authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filt nclude info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc CES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" USERLAND="GNU" VIDEO_CARDS t i810 mach64 mga neomagic nv r128 radeon savage sis tdfx trident vesa vga via vmware voodoo" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS (mass-change) Please do not use the Bugzilla product for system issues. Per the large red text it is only for problems with the Gentoo bugs.gentoo.org site only. *** Bug 233971 has been marked as a duplicate of this bug. *** You need to run python-updater after upgrading python. As evident from the ewarn message that the ebuild spits out: * If you have just upgraded from an older version of python you will * need to run: * /usr/sbin/python-updater * This will automatically rebuild all the python dependent modules * to run with python-2.5. * Your original Python is still installed and can be accessed via * /usr/bin/python2.x. Please re-open if this doesn't solve it. Hi Jeremy, thanks for your reply. I have run python updater and this was the output. * Starting Python Updater from 2.4 to 2.5 : * No packages needs to be remerged. Which version of app-portage/gentoolkit do you actually use? (In reply to comment #6) > Which version of app-portage/gentoolkit do you actually use? > gentoolkit-0.2.3-r1 I am also getting this (with the same Traceback) after updating python to 2.5. When doing the update I merged python-2.5, did python-update -i, removed python 2.4 and did a revdep-rebuild -X. After seeing the problem, I updated gentoolkit (to 0.2.3-r1), but it is still broken. Regards, Chris. The problem can be fixed by manually merging dev-python/pyxml. I presume this is a dependency of gentoolkit that was previously part of (or a dependency of) python-2.4. Regards, Chris. Another data-point... I have a machine with gentoolkit-0.2.4_rc3 (rather than the more usual 0.2.3-r1). This machine does not have pyxml installed after the python-2.5 update, but does *not* have the problem with glsa-check. So presumably, another fix is to update to the unstable gentoolkit. Chris. You are brilliant, it worked. emerge pyxml dispatch-conf and I can do glsa-check again. Thank you so much for all your help. Strangely, I have yet more machines that have the stable gentoolkit and no pyxml for which this is *not* a problem after updating to python-2.5. Figure that one out! You are brilliant, it worked. emerge pyxml dispatch-conf and I can do glsa-check again. Thank you so much for all your help. I don't think this is actually fixed. I've found myself in the same situation (but with gajim missing pyexpat). Merging pyxml is a solution but it should be pulled in by some depend. it's the missing /usr/lib64/python2.5/lib-dynload/pyexpat.so library, which is available in python-2.5.2-r6, but not in the python-2.5.2-r7 python herd: I have tried reproducing this error several times on my machines and have been unable to do so. Any suggestions on what is wrong? (In reply to comment #16) > python herd: > I have tried reproducing this error several times on my machines and have been > unable to do so. Any suggestions on what is wrong? > which version of python do you have installed? Do you have pyexpat installed? 2.5.2-r6 isn't in portage anymore, 2.5.2-r8 seems to include expat and pyexpat by default funny, after rebuilding of python it started to work... Hello,
Please, could people having this issue with pyexpat show their output of:
$ equery uses dev-lang/python
Thanks,
[ Searching for packages matching dev-lang/python... ] [ Colour Code : set unset ] [ Legend : Left column (U) - USE flags from make.conf ] [ : Right column (I) - USE flags packages was installed with ] [ Found these USE variables for dev-lang/python-2.5.2-r7 ] U I + + berkdb : Adds support for sys-libs/db (Berkeley DB for MySQL) - - build : !!internal use only!! DO NOT SET THIS FLAG YOURSELF!, used for creating build images and the first half of bootstrapping [make stage1] - - doc : Adds extra documentation (API, Javadoc, etc) - - elibc_uclibc : <unknown> - - examples : Install examples, usually source code + + gdbm : Adds support for sys-libs/gdbm (GNU database libraries) - - ipv6 : Adds support for IP version 6 + + ncurses : Adds ncurses support (console display library) + + readline : Enables support for libreadline, a GNU line-editing library that almost everyone wants - - sqlite : Adds support for sqlite - embedded sql database + + ssl : Adds support for Secure Socket Layer connections - + threads : Adds threads support for various packages. Usually pthreads - - tk : Adds support for Tk GUI toolkit - - ucs2 : Enable byte size 2 unicode (DON'T USE THIS UNLESS YOU KNOW WHAT YOU'RE DOING) - - wininst : Install required Windows executables to create an executable installer for MS Windows. on another marhine where I already re-compiled the same version python, it's the same, but the /usr/lib64/python2.5/lib-dynload/pyexpat.so is available. (In reply to comment #19) > Hello, > > Please, could people having this issue with pyexpat show their output of: > > $ equery uses dev-lang/python > > Thanks, > # equery uses dev-lang/python [ Searching for packages matching dev-lang/python... ] [ Colour Code : set unset ] [ Legend : Left column (U) - USE flags from make.conf ] [ : Right column (I) - USE flags packages was installed with ] [ Found these USE variables for dev-lang/python-2.4.4-r6 ] U I + + berkdb : Adds support for sys-libs/db (Berkeley DB for MySQL) - - bootstrap : !!internal use only!! DO NOT SET THIS FLAG YOURSELF!, used during original system bootstrapping [make stage2] - - build : !!internal use only!! DO NOT SET THIS FLAG YOURSELF!, used for creating build images and the first half of bootstrapping [make stage1] - + doc : Adds extra documentation (API, Javadoc, etc) - - elibc_uclibc : <unknown> - - examples : Install examples, usually source code - - gdbm : Adds support for sys-libs/gdbm (GNU database libraries) - - ipv6 : Adds support for IP version 6 + + ncurses : Adds ncurses support (console display library) - - nocxx : Disable support for C++ (DON'T USE THIS UNLESS YOU KNOW WHAT YOU'RE DOING) - - nothreads : Disable threads (DON'T USE THIS UNLESS YOU KNOW WHAT YOU'RE DOING) + + readline : Enables support for libreadline, a GNU line-editing library that almost everyone wants + + ssl : Adds support for Secure Socket Layer connections - - tk : Adds support for Tk GUI toolkit - - ucs2 : Enable byte size 2 unicode (DON'T USE THIS UNLESS YOU KNOW WHAT YOU'RE DOING) [ Found these USE variables for dev-lang/python-2.5.2-r7 ] U I + + berkdb : Adds support for sys-libs/db (Berkeley DB for MySQL) - - build : !!internal use only!! DO NOT SET THIS FLAG YOURSELF!, used for creating build images and the first half of bootstrapping [make stage1] - + doc : Adds extra documentation (API, Javadoc, etc) - - elibc_uclibc : <unknown> - - examples : Install examples, usually source code - - gdbm : Adds support for sys-libs/gdbm (GNU database libraries) - - ipv6 : Adds support for IP version 6 + + ncurses : Adds ncurses support (console display library) + + readline : Enables support for libreadline, a GNU line-editing library that almost everyone wants - - sqlite : Adds support for sqlite - embedded sql database + + ssl : Adds support for Secure Socket Layer connections - + threads : Adds threads support for various packages. Usually pthreads - - tk : Adds support for Tk GUI toolkit - - ucs2 : Enable byte size 2 unicode (DON'T USE THIS UNLESS YOU KNOW WHAT YOU'RE DOING) - - wininst : Install required Windows executables to create an executable installer for MS Windows. [ Searching for packages matching dev-lang/python... ] [ Colour Code : set unset ] [ Legend : Left column (U) - USE flags from make.conf ] [ : Right column (I) - USE flags packages was installed with ] [ Found these USE variables for dev-lang/python-2.4.4-r9 ] U I + + berkdb : Adds support for sys-libs/db (Berkeley DB for MySQL) - - bootstrap : !!internal use only!! DO NOT SET THIS FLAG YOURSELF!, used during original system bootstrapping [make stage2] - - build : !!internal use only!! DO NOT SET THIS FLAG YOURSELF!, used for creating build images and the first half of bootstrapping [make stage1] - - doc : Adds extra documentation (API, Javadoc, etc) - - elibc_uclibc : <unknown> - - examples : Install examples, usually source code + - gdbm : Adds support for sys-libs/gdbm (GNU database libraries) + + ipv6 : Adds support for IP version 6 + + ncurses : Adds ncurses support (console display library) - - nocxx : Disable support for C++ (DON'T USE THIS UNLESS YOU KNOW WHAT YOU'RE DOING) - - nothreads : Disable threads (DON'T USE THIS UNLESS YOU KNOW WHAT YOU'RE DOING) + + readline : Enables support for libreadline, a GNU line-editing library that almost everyone wants + + ssl : Adds support for Secure Socket Layer connections - - tk : Adds support for Tk GUI toolkit - - ucs2 : Enable byte size 2 unicode (DON'T USE THIS UNLESS YOU KNOW WHAT YOU'RE DOING) [ Found these USE variables for dev-lang/python-2.5.2-r7 ] U I + + berkdb : Adds support for sys-libs/db (Berkeley DB for MySQL) - - bootstrap : !!internal use only!! DO NOT SET THIS FLAG YOURSELF!, used during original system bootstrapping [make stage2] - - build : !!internal use only!! DO NOT SET THIS FLAG YOURSELF!, used for creating build images and the first half of bootstrapping [make stage1] - - doc : Adds extra documentation (API, Javadoc, etc) - - elibc_uclibc : <unknown> - - examples : Install examples, usually source code + + gdbm : Adds support for sys-libs/gdbm (GNU database libraries) + + ipv6 : Adds support for IP version 6 + + ncurses : Adds ncurses support (console display library) + + readline : Enables support for libreadline, a GNU line-editing library that almost everyone wants - - sqlite : Adds support for sqlite - embedded sql database + + ssl : Adds support for Secure Socket Layer connections - + threads : Adds threads support for various packages. Usually pthreads - - tk : Adds support for Tk GUI toolkit - - ucs2 : Enable byte size 2 unicode (DON'T USE THIS UNLESS YOU KNOW WHAT YOU'RE DOING) - - wininst : Install required Windows executables to create an executable installer for MS Windows. python 2.5.2-r7 just need xml use flag to fix this bug here USE="-xml" emerge python glsa-check -t all shows the bug USE="xml" emerge python glsa-check -t all works here then (In reply to comment #23) > python 2.5.2-r7 just need xml use flag to fix this bug here Reproducible, adding the XML use flag for python plus reemerging python solves the issue. So the ebuild should be modified as follows, I guess: EAPI="2" DEPEND=">=dev-lang/python-2.0[xml]" this apparently requires expat2, with expat1 it's broken. Can this be the problem? *** Bug 263056 has been marked as a duplicate of this bug. *** I'm pretty confident this is bug 281968 *** This bug has been marked as a duplicate of bug 281968 *** (In reply to comment #27) > I'm pretty confident this is bug 281968 No. glsa-check still won't work when dev-lang/python has been built with USE="-xml". Maintainers: Can I fix this bug? This bug was fixed some time ago. |
ran "glsa-check -l" [A] means this GLSA was already applied, [U] means the system is not affected and [N] indicates that the system might be affected. Traceback (most recent call last): File "/usr/bin/glsa-check", line 206, in <module> sys.exit(summarylist(glsalist)) File "/usr/bin/glsa-check", line 172, in summarylist myglsa = Glsa(myid, glsaconfig) File "/usr/lib/gentoolkit/pym/glsa.py", line 414, in __init__ self.read() File "/usr/lib/gentoolkit/pym/glsa.py", line 432, in read self.parse(urllib.urlopen(myurl)) File "/usr/lib/gentoolkit/pym/glsa.py", line 446, in parse self.DOM = xml.dom.minidom.parse(myfile) File "/usr/lib/python2.5/xml/dom/minidom.py", line 1912, in parse from xml.dom import expatbuilder File "/usr/lib/python2.5/xml/dom/expatbuilder.py", line 32, in <module> from xml.parsers import expat File "/usr/lib/python2.5/xml/parsers/expat.py", line 4, in <module> from pyexpat import * Since upgrading python from 2.4 to 2.5 I cannot do a glsa-check. I have checked if expat is installed and it is. Reproducible: Always Steps to Reproduce: 1.Upgrade python from 2.4 to 2.5 2.revdep-rebuild -X 3.glsa-check -l Actual Results: I get an ImportError: No module named pyexpat, I have checked if expat is installed and it is. Expected Results: List Glsa's