Bug 227597

Summary:	[gcc-4.3] sci-biology/amos-2.0.5 fails to compile w/ gcc-4.3
Product:	Gentoo Linux	Reporter:	Marek Miller <mlm>
Component:	Current packages	Assignee:	Andrey Kislyuk (RETIRED) <weaver>
Status:	RESOLVED FIXED
Severity:	normal	CC:	sci-biology
Priority:	High
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	198121
Attachments:	amos-2.0.5-gcc43.patch

Description Marek Miller 2008-06-16 18:51:11 UTC

Again missing headers.

Steps to reproduce:
1. echo "=sci-biology/amos-2.0.5" >> /etc/portage/package.keywords
2. USE="" emerge -v1 =sci-biology/amos-2.0.5

The error messages:
1.
> ConfigFile.cc: In member function 'void ConfigFile::parseConfig()':
> ConfigFile.cc:113: error: 'strlen' was not declared in this scope

2.
> Logger.cc: In member function 'MessageLevel Logger::convertFilterLevel(const std::string&) const':
> Logger.cc:168: error: 'atoi' was not declared in this scope

3.
> OptionResult.cc: In member function 'virtual void IntOptionResult::setVal(const std::string&, const std::string&)':
> OptionResult.cc:330: error: 'atoi' was not declared in this scope

4.
> Options.cc: In constructor 'Options::Options(int, char**)':
> Options.cc:43: error: 'strrchr' was not declared in this scope

5.
> missing-reads.cc: In function 'int main(int, char**)':
> missing-reads.cc:93: error: 'strcmp' was not declared in this scope

6.
> runAmos.cc: In function 'void finish(int)':
> runAmos.cc:66: error: 'exit' was not declared in this scope

7.
> HistogramWindow.cc: In member function 'void HistogramWindow::loadShadeSD()':
> HistogramWindow.cc:73: error: 'atof' was not declared in this scope


My emerge --info: as in the bug 226663, comment 2.

Comment 1 Marek Miller 2008-06-16 18:51:37 UTC

Created attachment 157123 [details, diff]
amos-2.0.5-gcc43.patch

Comment 2 Andrey Kislyuk (RETIRED) gentoo-dev

2008-06-17 19:36:02 UTC

Added, upstream notified, thanks.