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Bug 223921

Summary: sci-libs/mkl-10.0.3.020 src_unpack fails
Product: Gentoo Linux Reporter: Peter.Bienstman
Component: Current packagesAssignee: Gentoo Science Related Packages <sci>
Status: RESOLVED TEST-REQUEST    
Severity: normal    
Priority: High    
Version: 2006.1   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: Log file created by install
MKL install log

Description Peter.Bienstman 2008-05-28 08:00:11 UTC
>>> Unpacking l_mkl_p_10.0.3.020.tgz to /var/tmp/portage/sci-libs/mkl-10.0.3.020/work
 * Extracting ...
find: `/var/tmp/portage/sci-libs/mkl-10.0.3.020/work/mkl-10.0.3.020': No such file or directory
 * Could not find extracted files
 * See /var/tmp/portage/sci-libs/mkl-10.0.3.020/work/l_mkl_p_10.0.3.020/install/log.txt to see why
 *
 * ERROR: sci-libs/mkl-10.0.3.020 failed.
 * Call stack:
 *               ebuild.sh, line   49:  Called src_unpack
 *             environment, line 3063:  Called die
 * The specific snippet of code:
 *           die "extracting failed";
 *  The die message:
 *   extracting failed



Reproducible: Always




Portage 2.1.4.4 (default-linux/amd64/2007.0/desktop, gcc-4.1.2, glibc-2.6.1-r0, 2.6.24-gentoo-r4 x86_64)
=================================================================
System uname: 2.6.24-gentoo-r4 x86_64 Intel(R) Core(TM)2 CPU 6400 @ 2.13GHz
Timestamp of tree: Wed, 28 May 2008 01:33:01 +0000
app-shells/bash:     3.2_p33
dev-java/java-config: 1.3.7, 2.1.6
dev-lang/python:     2.4.4-r9
dev-python/pycrypto: 2.0.1-r6
sys-apps/baselayout: 1.12.11.1
sys-apps/sandbox:    1.2.18.1-r2
sys-devel/autoconf:  2.13, 2.61-r1
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1
sys-devel/binutils:  2.18-r1
sys-devel/gcc-config: 1.4.0-r4
sys-devel/libtool:   1.5.26
virtual/os-headers:  2.6.23-r3
ACCEPT_KEYWORDS="amd64"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=nocona -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/kde/4.0/env /usr/kde/4.0/share/config /usr/kde/4.0/shutdown /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="distlocks metadata-transfer sandbox sfperms strict unmerge-orphans userfetch"
GENTOO_MIRRORS="ftp://ftp.belnet.be/mirror/rsync.gentoo.org/gentoo/ ftp://distro.ibiblio.org/pub/linux/distributions/gentoo/"
LINGUAS="en nl"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X aalib acl acpi alsa amd64 arts atlas avi bash-completion berkdb cairo cdr cli cracklib crypt cups curl cvs dbus dri dvd dvdr dvdread eds emboss encode esd evo f77 fam firefox flac fortran gdbm gif gnome gphoto2-gnome gpm gstreamer gtk hal iconv imap imlib ipv6 isdnlog jpeg kde kerberos libwww mad midi mikmod mmx mp3 mpeg mudflap ncurses nls nptl nptlonly nsplugin ntplonly nvidia ogg oggvorbis opengl openmp oss pam pcre pda pdf pdflib perl pic png pppd prelink python qt3 qt3support qt4 qtmt quicktime readline reflection samba sdl session smime snmp spell spl sqlite sse sse2 ssl subversion svg tcltk tcpd tetex tiff tk truetype unicode vorbis xml xorg xv zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en nl" USERLAND="GNU" VIDEO_CARDS="nvidia"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
Comment 1 Peter.Bienstman 2008-05-28 08:00:53 UTC
Created attachment 154549 [details]
Log file created by install

Added log file created by install
Comment 2 Jeroen Roovers (RETIRED) gentoo-dev 2008-05-28 15:55:55 UTC
You might as well attach the full build log. (I assume you have a license.)
Comment 3 Peter.Bienstman 2008-05-29 07:42:08 UTC
Apparently my MKL 9 version didn't work for the MKL 10, sorry.

Closing now.
Comment 4 Luyang Han 2008-06-04 13:32:34 UTC
This problem will always occur and it is independent of the license.

The problem is simply that the source files are extracted to:
/var/tmp/portage/sci-libs/mkl-10.0.3.020/work/l_mkl_p_10.0.3.020
But the portage wants to find the files at:
/var/tmp/portage/sci-libs/mkl-10.0.3.020/work/mkl-10.0.3.020

I think this is indeed a bug. Please reopen that.
Comment 5 Jeroen Roovers (RETIRED) gentoo-dev 2008-06-04 16:07:45 UTC
(In reply to comment #4)
> This problem will always occur and it is independent of the license.
> 
> The problem is simply that the source files are extracted to:
> /var/tmp/portage/sci-libs/mkl-10.0.3.020/work/l_mkl_p_10.0.3.020
> But the portage wants to find the files at:
> /var/tmp/portage/sci-libs/mkl-10.0.3.020/work/mkl-10.0.3.020
> 
> I think this is indeed a bug. Please reopen that.

I assume you do have a license, then. Please attach a build log and your emerge --info.
Comment 6 Sébastien Fabbro (RETIRED) gentoo-dev 2008-06-05 10:27:10 UTC
>  * See
> /var/tmp/portage/sci-libs/mkl-10.0.3.020/work/l_mkl_p_10.0.3.020/install/log.txt
> to see why

Look to see why and attach the file above. It is usually an expired license problem. 
Thanks.
Comment 7 Sébastien Fabbro (RETIRED) gentoo-dev 2008-06-23 08:39:18 UTC
re-closing as test-request until we have some valid logs to work on.
Comment 8 Ostashevskyi Viktor 2008-07-18 10:09:43 UTC
Created attachment 160705 [details]
MKL install log

ostash ostash # export MKL_LICENSE=/home/ostash/NCOM_L_MKL__NJ6W-J6HSPPB8.lic
ostash ostash # emerge mkl
WARNING: repository at /usr/portage is missing a repo_name entry
Calculating dependencies... done!
>>> Verifying ebuild Manifests...

>>> Emerging (1 of 1) sci-libs/mkl-10.0.3.020-r3 to /
 * l_mkl_p_10.0.3.020.tgz RMD160 SHA1 SHA256 size ;-) [ ok ]
 * checking ebuild checksums ;-) [ ok ]
 * checking auxfile checksums ;-) [ ok ]
 * checking miscfile checksums ;-) [ ok ]
 * checking l_mkl_p_10.0.3.020.tgz ;-) [ ok ]
 * Checking for at least 1100MBytes disk space at ${T} [ ok ]
 * You need one of these Fortran Compilers: gfortran ifc g77
 * Installed are:  gfortran
>>> Unpacking source...
>>> Unpacking l_mkl_p_10.0.3.020.tgz to /var/tmp/portage/sci-libs/mkl-10.0.3.020-r3/work
 * Extracting ...
find: `/var/tmp/portage/sci-libs/mkl-10.0.3.020-r3/work/mkl-10.0.3.020': No such file or directory
 * Could not find extracted files
 * See /var/tmp/portage/sci-libs/mkl-10.0.3.020-r3/work/l_mkl_p_10.0.3.020/install/log.txt to see why
 *
 * ERROR: sci-libs/mkl-10.0.3.020-r3 failed.
 * Call stack:
 *               ebuild.sh, line   49:  Called src_unpack
 *             environment, line 3051:  Called die
 * The specific snippet of code:
 *           die "extracting failed";
 *  The die message:
 *   extracting failed
 *
 * If you need support, post the topmost build error, and the call stack if relevant.
 * A complete build log is located at '/var/tmp/portage/sci-libs/mkl-10.0.3.020-r3/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/mkl-10.0.3.020-r3/temp/environment'.
 *
--------------------------- ACCESS VIOLATION SUMMARY ---------------------------
LOG FILE = "/var/log/sandbox/sandbox-4567.log"

mkdir:     /data/opt/intel
--------------------------------------------------------------------------------

 * Messages for package sci-libs/mkl-10.0.3.020-r3:

 * Could not find extracted files
 * See /var/tmp/portage/sci-libs/mkl-10.0.3.020-r3/work/l_mkl_p_10.0.3.020/install/log.txt to see why
 *
 * ERROR: sci-libs/mkl-10.0.3.020-r3 failed.
 * Call stack:
 *               ebuild.sh, line   49:  Called src_unpack
 *             environment, line 3051:  Called die
 * The specific snippet of code:
 *           die "extracting failed";
 *  The die message:
 *   extracting failed
 *
 * If you need support, post the topmost build error, and the call stack if relevant.
 * A complete build log is located at '/var/tmp/portage/sci-libs/mkl-10.0.3.020-r3/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/mkl-10.0.3.020-r3/temp/environment'.
 *
Comment 9 Sébastien Fabbro (RETIRED) gentoo-dev 2008-07-18 11:41:30 UTC
(In reply to comment #8)
>
> WARNING: repository at /usr/portage is missing a repo_name entry


> --------------------------- ACCESS VIOLATION SUMMARY
> ---------------------------
> LOG FILE = "/var/log/sandbox/sandbox-4567.log"
> 
> mkdir:     /data/opt/intel
> --------------------------------------------------------------------------------

Your license is fine, but something fishy in your make.conf or definitions of the portage repository.


Comment 10 Ostashevskyi Viktor 2008-10-18 09:27:12 UTC
(In reply to comment #9)

> Your license is fine, but something fishy in your make.conf or definitions of
> the portage repository.
> 

Nothing fishy. /opt is symlink to /data/opt.