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Bug 212598

Summary: sci-chemistry/openbabel-2.2.0_beta4 build fails
Product: Gentoo Linux Reporter: Gabriel Devenyi <ace>
Component: New packagesAssignee: Gentoo Linux bug wranglers <bug-wranglers>
Status: RESOLVED DUPLICATE    
Severity: normal    
Priority: High    
Version: 2007.0   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---

Description Gabriel Devenyi 2008-03-07 17:00:11 UTC
Using paludis, the build bails out right after configure:

: creating src/GUI/Makefile
config.status: creating src/descriptors/Makefile
config.status: creating src/ops/Makefile
config.status: creating include/Makefile
config.status: creating include/openbabel/Makefile
config.status: creating include/openbabel/math/Makefile
config.status: creating test/Makefile
config.status: creating test/cmltest/Makefile
config.status: creating tools/Makefile
config.status: creating doc/Makefile
config.status: creating scripts/Makefile
config.status: creating openbabel-2.0.pc
config.status: creating src/config.h
config.status: executing depfiles commands
config.status: executing include/openbabel/babelconfig.h commands
make -j3
Makefile:156: *** missing separator.  Stop.

!!! ERROR in sci-chemistry/openbabel-2.2.0_beta4:
!!! In src_compile at line 27
!!! emake failed

!!! Call stack:
!!!    * src_compile (/usr/libexec/paludis/0/src_compile.bash:27)
!!!    * ebuild_f_compile (/usr/libexec/paludis/0/src_compile.bash:51)
!!!    * ebuild_main (/usr/libexec/paludis/ebuild.bash:457)
!!!    * main (/usr/libexec/paludis/ebuild.bash:475)

diefunc: making ebuild PID 6414 exit with error
die trap: exiting with error.

Install error:
  * In program /usr/bin/paludis --dl-reinstall if-use-changed --show-reasons summary --log-level warning --debug-build none --continue-on-failure if-independent --dl-reinstall-scm daily -i everything:
  * When performing install action from command line:
  * When executing install task:
  * When installing 'sci-chemistry/openbabel-2.2.0_beta4:0::gentoo':
  * Install error: Install failed for 'sci-chemistry/openbabel-2.2.0_beta4:0::gentoo'


---- paludis _I
paludis 0.26.0_alpha9
Paludis build information:
    Compiler:
        CXX:                   i686-pc-linux-gnu-g++ 4.1.2 (Gentoo 4.1.2)
        CXXFLAGS:              -O2 -march=prescott -pipe -fomit-frame-pointer
        LDFLAGS:               -Wl,-O1 -Wl,--as-needed
        DATE:                  2008-02-29T09:38:27-0500

    Libraries:
        C++ Library:           GNU libstdc++ 20070214

    Reduced Privs:
        reduced_uid:           106
        reduced_uid->name:     paludisbuild
        reduced_uid->dir:      /dev/null
        reduced_gid:           1005
        reduced_gid->name:     paludisbuild

    Paths:
        DATADIR:               /usr/share
        LIBDIR:                /usr/lib
        LIBEXECDIR:            /usr/libexec
        SYSCONFDIR:            /etc
        PYTHONINSTALLDIR:      /usr/lib/python2.5/site-packages
        RUBYINSTALLDIR:        /usr/lib/ruby/site_ruby/1.8/i686-linux

Repository virtuals:
    format:                    virtuals

Repository installed-virtuals:
    format:                    installed_virtuals
    root:                      /

Repository gentoo:
    format:                    ebuild
    location:                  /usr/portage
    append_repository_name_to_write_cache: true
    binary_destination:        false
    binary_keywords:
    binary_uri_prefix:
    builddir:                  /var/tmp/paludis
    cache:                     /usr/portage/metadata/cache
    distdir:                   /usr/portage/distfiles
    eapi_when_unknown:         0
    eapi_when_unspecified:     0
    eclassdirs:                /usr/portage/eclass
    ignore_deprecated_profiles: false
    layout:                    traditional
    names_cache:               /usr/portage/.cache/names
    newsdir:                   /usr/portage/metadata/news
    profile_eapi:              0
    profiles:                  /usr/portage/profiles/default-linux/x86/2007.0
    securitydir:               /usr/portage/metadata/glsa
    setsdir:                   /usr/portage/sets
    sync:                      rsync://rsync.gentoo.org/gentoo-portage
    sync_options:
    use_manifest:              use
    write_cache:               /var/cache/paludis/metadata

    Package information:
        app-admin/eselect-compiler: (none)
        app-shells/bash:       3.2_p33
        dev-java/java-config:  1.3.7 2.1.5
        dev-lang/python:       2.4.4-r5 2.5.1-r5
        dev-python/pycrypto:   2.0.1-r6
        dev-util/ccache:       2.4-r7
        dev-util/confcache:    (none)
        sys-apps/baselayout:   2.0.0
        sys-apps/sandbox:      1.2.18.1-r2
        sys-devel/autoconf:    2.13 2.61-r1
        sys-devel/automake:    1.10.1 1.5 1.6.3 1.7.9-r1 1.8.5-r3 1.9.6-r2
        sys-devel/binutils:    2.18-r1
        sys-devel/gcc-config:  1.4.0-r4
        sys-devel/libtool:     1.5.26
        virtual/os-headers:    2.6.24 (for sys-kernel/linux-headers::installed)
Comment 1 Jakub Moc (RETIRED) gentoo-dev 2008-03-07 17:52:54 UTC
Search please...


*** This bug has been marked as a duplicate of bug 212526 ***