Bug 212410 – dev-db/mysql-gui-tools emerge fails with error

• Product: Gentoo Linux
• Status: RESOLVED DUPLICATE

[Description Marti Raudsepp 2008-03-05 19:08:17 UTC]

Emerge of dev-db/mysql-gui-tools fails on amd64 architecture.

[non]# emerge mysql-gui-tools -p

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  N    ] dev-db/mysql-gui-tools-5.0_p12-r2  USE="administrator query-browser -nls (-workbench)" 
[non]# emerge mysql-gui-tools                                                                                                                                            @~
Calculating dependencies... done!
>>> Verifying ebuild Manifests...

>>> Emerging (1 of 1) dev-db/mysql-gui-tools-5.0_p12-r2 to /
[...]
if /bin/sh ../../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I../../.. -I../include -I../../../library/utilities/shared_include -I../../../library/utilities/include -I../../../library/sql-parser/include -I/usr/include/mysql -DHAVE_ERRNO_AS_DEFINE=1 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/libxml2       -fstack-protector -pipe -O2 -march=athlon64 -mtune=athlon64 -fexceptions -Wall -Wsign-compare -Wall -Wsign-compare  -MT myx_network.lo -MD -MP -MF ".deps/myx_network.Tpo" -c -o myx_network.lo myx_network.c; \
	then mv -f ".deps/myx_network.Tpo" ".deps/myx_network.Plo"; else rm -f ".deps/myx_network.Tpo"; exit 1; fi
In file included from /usr/include/mysql/my_global.h:83,
                 from myx_library.c:35:
/usr/include/mysql/my_config.h:982:1: warning: "PACKAGE" redefined
In file included from myx_library.c:28:
../../../config.h:68:1: warning: this is the location of the previous definition
In file included from /usr/include/mysql/my_global.h:83,
                 from myx_library.c:35:
/usr/include/mysql/my_config.h:988:1: warning: "PACKAGE_NAME" redefined
In file included from myx_library.c:28:
../../../config.h:74:1: warning: this is the location of the previous definition
In file included from /usr/include/mysql/my_global.h:83,
                 from myx_library.c:35:
/usr/include/mysql/my_config.h:991:1: warning: "PACKAGE_STRING" redefined
In file included from myx_library.c:28:
../../../config.h:77:1: warning: this is the location of the previous definition
In file included from /usr/include/mysql/my_global.h:83,
                 from myx_library.c:35:
/usr/include/mysql/my_config.h:994:1: warning: "PACKAGE_TARNAME" redefined
In file included from myx_library.c:28:
../../../config.h:80:1: warning: this is the location of the previous definition
In file included from /usr/include/mysql/my_global.h:83,
                 from myx_library.c:35:
/usr/include/mysql/my_config.h:997:1: warning: "PACKAGE_VERSION" redefined
In file included from myx_library.c:28:
../../../config.h:83:1: warning: this is the location of the previous definition
In file included from /usr/include/mysql/my_global.h:83,
                 from myx_library.c:35:
/usr/include/mysql/my_config.h:1113:1: warning: "VERSION" redefined
In file included from myx_library.c:28:
../../../config.h:89:1: warning: this is the location of the previous definition
In file included from myx_library.c:35:
/usr/include/mysql/my_global.h:361:24: error: asm/atomic.h: No such file or directory
make[4]: *** [myx_library.lo] Error 1
make[4]: *** Waiting for unfinished jobs....
 x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I../../.. -I../include -I../../../library/utilities/shared_include -I../../../library/utilities/include -I../../../library/sql-parser/include -I/usr/include/mysql -DHAVE_ERRNO_AS_DEFINE=1 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/libxml2 -fstack-protector -pipe -O2 -march=athlon64 -mtune=athlon64 -fexceptions -Wall -Wsign-compare -Wall -Wsign-compare -MT myx_network.lo -MD -MP -MF .deps/myx_network.Tpo -c myx_network.c  -fPIC -DPIC -o .libs/myx_network.o
myx_network.c: In function 'myx_ping_host':
myx_network.c:217: warning: dereferencing type-punned pointer will break strict-aliasing rules
 x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I../../.. -I../include -I../../../library/utilities/shared_include -I../../../library/utilities/include -I../../../library/sql-parser/include -I/usr/include/mysql -DHAVE_ERRNO_AS_DEFINE=1 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/libxml2 -fstack-protector -pipe -O2 -march=athlon64 -mtune=athlon64 -fexceptions -Wall -Wsign-compare -Wall -Wsign-compare -MT myx_network.lo -MD -MP -MF .deps/myx_network.Tpo -c myx_network.c -o myx_network.o >/dev/null 2>&1
make[4]: Leaving directory `/var/tmp/portage/dev-db/mysql-gui-tools-5.0_p12-r2/work/mysql-gui-tools-5.0r12/mysql-gui-common/library/base-library/source'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/var/tmp/portage/dev-db/mysql-gui-tools-5.0_p12-r2/work/mysql-gui-tools-5.0r12/mysql-gui-common/library/base-library'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/var/tmp/portage/dev-db/mysql-gui-tools-5.0_p12-r2/work/mysql-gui-tools-5.0r12/mysql-gui-common/library'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/var/tmp/portage/dev-db/mysql-gui-tools-5.0_p12-r2/work/mysql-gui-tools-5.0r12/mysql-gui-common'
make: *** [all] Error 2
 * 
 * ERROR: dev-db/mysql-gui-tools-5.0_p12-r2 failed.
 * Call stack:
 *               ebuild.sh, line   49:  Called src_compile
 *             environment, line 2913:  Called gnome2_src_compile 'src_compile' 'src_compile' '--disable-java-modules' '--disable-grt'
 *             environment, line 2137:  Called die
 * The specific snippet of code:
 *       emake || die "compile failure"
 *  The die message:
 *   compile failure
 * 
 * If you need support, post the topmost build error, and the call stack if relevant.
 * A complete build log is located at '/var/tmp/portage/dev-db/mysql-gui-tools-5.0_p12-r2/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-db/mysql-gui-tools-5.0_p12-r2/temp/environment'.
 * 


[non]# emerge --info
Portage 2.1.4.4 (default-linux/amd64/2007.0, gcc-4.1.2, glibc-2.7-r1, 2.6.24.3 x86_64)
=================================================================
System uname: 2.6.24.3 x86_64 AMD Athlon(tm) 64 Processor 3000+
Timestamp of tree: Sat, 01 Mar 2008 15:16:01 +0000
app-shells/bash:     3.2_p33
dev-java/java-config: 1.3.7, 2.0.33-r1
dev-lang/python:     2.4.4-r4, 2.5.1-r5
dev-python/pycrypto: 2.0.1-r6
dev-util/confcache:  0.4.2-r1
sys-apps/baselayout: 1.12.11.1
sys-apps/sandbox:    1.2.18.1-r2
sys-devel/autoconf:  2.13, 2.61-r1
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1
sys-devel/binutils:  2.18-r1
sys-devel/gcc-config: 1.4.0-r4
sys-devel/libtool:   1.5.26
virtual/os-headers:  2.6.24
ACCEPT_KEYWORDS="amd64 ~amd64"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-fstack-protector -pipe -O2 -march=athlon64 -mtune=athlon64"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/init.d /etc/php/apache2-php4/ext-active/ /etc/php/cgi-php4/ext-active/ /etc/php/cli-php4/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d /usr/share/X11"
CXXFLAGS="-fstack-protector -pipe -O2 -march=athlon64 -mtune=athlon64"
DISTDIR="/usr/distfiles"
FEATURES="distlocks fixpackages metadata-transfer parallel-fetch sandbox sfperms strict unmerge-orphans userfetch userpriv"
GENTOO_MIRRORS="   ftp://ftp.ipv6.linux.ee/pub/gentoo/distfiles/   http://ftp.linux.ee/pub/gentoo/distfiles/   http://trumpetti.atm.tut.fi/gentoo/"
LANG="en_US"
LC_ALL="en_US.UTF-8"
LINGUAS="en en_US en_GB et"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/musicbrainz-overlay /usr/local/junkoverlay"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="3dnow X a52 aac aalib acl adns agg alsa amd64 ao asf berkdb bitmap-fonts browserplugin bzip2 cairo cap caps cddb cli cracklib crypt cscope curl custom-cflags d dbus device-mapper dga dri dvd encode exif expat fame fastcgi fbcon ffmpeg firefox flac galago gd gdbm gdc gedit gimp glib glitz glut gmp gnome gphoto2 gpm gtk hal iconv idn imagemagick imlib ipv6 isdnlog jbig joystick jpeg jpeg2k keyring lcms libcaca libnotify logrotate lzo mad matroska midi mikmod mjpeg mmap mmx mng mozdevelop mozilla moznoirc mozsvg mp3 mpeg mplayer mudflap musepack musicbrainz ncurses nptl nptlonly nsplugin ntfs offensive ogg oggvorbis openal opengl openmp opensc otr pam pcre pcsc-lite perl png pppd python qt3 qt4 quotas randr readline reflection reiser4 reiserfs rtc samba sasl sdl session smartcard speex spl sqlite sqlite3 sse sse2 ssl startup-notification svg theora tiff truetype truetype-fonts type1-fonts unicode usb v4l v4l2 vim-syntax vorbis wxwindows xcb xgetdefault xine xml xml2 xorg xv xvid xvmc zlib zsh-completion" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en en_US en_GB et" USERLAND="GNU" VIDEO_CARDS="nv"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LDFLAGS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Jakub Moc (RETIRED) 2008-03-05 19:09:53 UTC]

*** This bug has been marked as a duplicate of bug 163151 ***