Bug 207100 – sci-biology/rnaview-20040713: set env variable RNAVIEW=/usr/share/rnaview

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Martin Mokrejš 2008-01-23 00:06:52 UTC]

http://ndbserver.rutgers.edu/services/help/rnaview-readme.html

	
RNAView Installation Instructions
	

RNAVIEW program is developed to quickly display the secondary structure  of RNA/DNA with tertiary interactions. It is fully implemented with  Leontis and Westhof's ( RNA (2001) 7, 499-512), convention for the  edge-to-edge hydrogen bonding interactions.

The program has been tested in Linux, UNIX, SUN, and MAC systems

How to install the program:

The program can be installed in any directory (for example /?/?/?/)

   1. Unpack the program package in the directory that you desire (e.g. /?/?/?/ ).
      TYPE

        zcat RNAVIEW.tar.gz | tar xvf - 

   2. Install the program
      Go to the /?/?/?/RNAVIEW/ directory
      Type

        make 

      An executable file rnaview will be placed in the directory /?/?/?/RNAVIEW/bin/

   3.

      Define the environment variable RNAVIEW to point to the installation directory (e.g. /?/?/?/RNAVIEW)
      Add the following sentences to your shell script.) (or type the two sentences in the window, before executing the program:

      For C shell users:

        setenv RNAVIEW /?/?/?/RNAVIEW

        setenv PATH "/?/?/?/RNAVIEW/bin:"$PATH	

      For Bourne shell users:

        RNAVIEW=/?/?/?/RNAVIEW;  export RNAVIEW 

        PATH="/?/?/?/RNAVIEW/bin:"$PATH; export PATH 

   4.

      To test the program, go to /?/?/?/RNAVIEW/test
      type   rnaview -p tr0001.pdb
      The 2D structure is shown by tr0001.pdb.ps and base pair types is given by tr0001.pdb.out

[Comment 1 Olivier Fisette (RETIRED) 2008-08-26 18:09:23 UTC]

Added convenience env.d file to new revision. Thanks for reporting.