Bug 18679 – New Ebuild; app-sci/clustalw-1.83.ebuld

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Gontran Zepeda 2003-04-03 04:04:16 UTC]

Multiple alignment is a crucial aspect of biological sequence analysis. 
Clustalw was the first widely used tool for this task, and continues to be of
use today.

DESCRIPTION="Improving the sensitivity of progressive multiple sequence alignmen
t through sequence weighting, position specific gap penalties and weight matrix 
choice."

HOMEPAGE="http://www.embl-heidelberg.de/~seqanal/"

[Comment 1 Gontran Zepeda 2003-04-03 04:05:40 UTC]

Created attachment 10145 [details, diff]
clustalw-1.83.ebuild

new ebuild

[Comment 2 Gontran Zepeda 2003-04-03 04:06:33 UTC]

Created attachment 10146 [details, diff]
files/optimize-clustalw1.83.patch

for the files dir.

[Comment 3 Gontran Zepeda 2003-04-03 04:08:56 UTC]

Package is NOT x86 only, contrary to my KEYWORDS assertion.

[Comment 4 Michael Imhof (RETIRED) 2003-04-03 12:38:05 UTC]

Ok, i checked in the ebuild to app-sci/clustalw.
I added a license file: licenses/clustalw and edited the ebuild to point to it.
I hope the section i included there actually IS the license. Please correct me if I'm wrong.
I masked the ebuild for all archs. Please have a look and tell me if everything is ok, so I can unmask it.

[Comment 5 Gontran Zepeda 2003-04-04 03:08:34 UTC]

Your changes look real good.  Thanks for the suggestion of license addition.  You're more privy to the practice for licensing:  tell me, is it fair to reference the license that's in the README in lieu of adding YAL (yet another license) to the /usr/portage/license directory?  In the case that it's <i>not</i>, I'll append the only obvious reference to licensing that I found in the README, as an attachment.

[Comment 6 Gontran Zepeda 2003-04-04 03:09:23 UTC]

Created attachment 10184 [details]
distribution terms

possible license candidate file

[Comment 7 Michael Imhof (RETIRED) 2003-04-05 07:46:07 UTC]

Ok, changed the license according to your attachement.
I think it's the normal process to add licenses to licenses.
I unmasked it for x86.
Closing this bug now.

Thanks for your help!