Bug 171354 – [fPIC] sci-libs/lapack-atlas-3.7.24-r2 fails to emerge with sys-devel/libtool-1.5.23b

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Matthias M Weber 2007-03-18 16:00:42 UTC]

sci-libs/lapack-atlas-3.7.24-r2 fails to emerge during the last stage of compilation. I get the following:

/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../x86_64-pc-linux-gnu/bin/ld: .libs/cgesv.o: relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC
.libs/cgesv.o: could not read symbols: Bad value
collect2: ld returned 1 exit status

!!! ERROR: sci-libs/lapack-atlas-3.7.24-r2 failed.
Call stack:
  ebuild.sh, line 1614:   Called dyn_compile
  ebuild.sh, line 971:   Called qa_call 'src_compile'
  environment, line 3976:   Called src_compile
  lapack-atlas-3.7.24-r2.ebuild, line 140:   Called die

!!! Failed to create liblapack.la
!!! If you need support, post the topmost build error, and the call stack if relevant.
!!! A complete build log is located at '/data1/portage/sci-libs/lapack-atlas-3.7.24-r2/temp/build.log'.

Reproducible: Always




emerge --info

Portage 2.1.2.2 (default-linux/amd64/2006.0, gcc-4.1.2, glibc-2.5-r1, 2.6.20-gentoo-r3-galenos x86_64)
=================================================================
System uname: 2.6.20-gentoo-r3-galenos x86_64 AMD Athlon(tm) 64 X2 Dual Core Processor 4200+
Gentoo Base System version 1.12.9
Timestamp of tree: Sun, 18 Mar 2007 13:50:01 +0000
ccache version 2.4 [enabled]
dev-java/java-config: 1.3.7, 2.0.31-r5
dev-lang/python:     2.4.4
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.4-r6
sys-apps/sandbox:    1.2.18.1
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.15-r1
sys-devel/libtool:   1.5.23b
virtual/os-headers:  2.6.20-r2
ACCEPT_KEYWORDS="amd64 ~amd64"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=athlon64 -msse3"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/lib/X11/xdm /usr/lib/fax /usr/share/X11/xkb /usr/share/config /var/bind /var/spool/fax/etc"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/java-config/vms/ /etc/php/apache1-php5/ext-active/ /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/splash /etc/terminfo"
CXXFLAGS="-O2 -pipe -march=athlon64 -msse3"
DISTDIR="/data1/distfiles"
FEATURES="autoconfig ccache distlocks metadata-transfer parallel-fetch sandbox sfperms strict"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --filter=H_**/files/digest-*"
PORTAGE_TMPDIR="/data1"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=" "
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="X Xaw3d a52 aac aalib acl acpi alsa amd64 ansi apache2 apm arts athena audiofile bash-completion bcmath berkdb bitmap-fonts blas bzip2 cairo calendar caps cblas ccache cdparanoia cdr cdrom cgi cli clisp cracklib crypt css ctype cups curl cyrus dbus dga directfb doc dri dv dvb dvd dvdr dvdread eds emboss encode exif expat fbcon ffmpeg fftw firefox font-server foomaticdb fortran ftp gb gd gdbm gif glitz glut gnome gnutls gphoto2 gpm gs gstreamer gtk gtk2 guile hal iconv idn imagemagick imlib ipppd ipv6 isdnlog java javascript jpeg kde leim libcaca lm_sensors lzw lzw-tiff mad maildir matroska matrox mbox mcal mhash midi mikmod mime mozcalendar mozilla mp3 mpeg mule musicbrainz ncurses nis nls nptl nptlonly nsplugin numeric ogg openct opengl pam pango pcre pdf perl php png portaudio posix pppd python qt3 qt4 quicktime readline recode reflection samba sasl scanner sdl session slang sndfile sockets socks5 sox speedo speex spell spl ssl svg syslog sysvpc tcltk tcpd theora threads tiff tk tordns truetype truetype-fonts type1-fonts unicode urandom usb userlocales vim vim-with-x vorbis wireshark wmp xine xml xorg xosd xpm xv xvid zlib" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" ELIBC="glibc" FRITZCAPI_CARDS="fcpci" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en de" USERLAND="GNU" VIDEO_CARDS="mga fbdev vesa"

[Comment 1 Matthias M Weber 2007-03-18 16:02:33 UTC]

Created attachment 113672 [details]
build.log

[Comment 2 Alexis Ballier 2007-03-24 22:46:47 UTC]

same here, downgrading to libtool 1.5.22 workarounded it, but unfortunately I don't know how to fix this. It seems to be libtool going mad with the big command line it's given as input.

[Comment 3 Matthias M Weber 2007-03-25 07:21:27 UTC]

I could reproduce the workaround you suggested.

[Comment 4 Alexis Ballier 2007-03-25 15:29:50 UTC]

probably assigned better like that

[Comment 5 Christian Faulhammer (RETIRED) 2007-06-29 10:54:47 UTC]

3.7.32 links fine with libtool 1.5.23b, so does the current stable.  Closing as fixed