Bug 109684

Summary:	sci-misc/h5utils-1.7.2 ACCESS VIOLATION
Product:	Gentoo Linux	Reporter:	Andrey <aela>
Component:	New packages	Assignee:	Gentoo Science Related Packages <sci>
Status:	RESOLVED FIXED
Severity:	major
Priority:	High
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	patch for ebuild patch for Makefile.in patch for configure.in configure.ac patch for h5utils-1.10

Description Andrey 2005-10-18 02:02:06 UTC

Access violations occure when octave plugin is built and installed: 
 

Reproducible: Always
Steps to Reproduce:
1. emerge octave  
2. emerge h5utils 
 
  
Actual Results:  
/bin/install -c -d /usr/libexec/octave/2.1.69/site/oct/x86_64-pc-linux-gnu// 
ACCESS DENIED  
chmod:     /usr/libexec/octave/2.1.69/site/oct/x86_64-pc-linux-gnu 
/bin/install: cannot change permissions of 
`/usr/libexec/octave/2.1.69/site/oct/x86_64-pc-linux-gnu//': Permission denied 
make: *** [h5read-install] Error 1 
 
!!! ERROR: sci-misc/h5utils-1.7.2 failed. 
!!! Function einstall, Line 524, Exitcode 2 
!!! einstall failed 
!!! If you need support, post the topmost build error, NOT this status 
message. 
 
--------------------------- ACCESS VIOLATION SUMMARY 
--------------------------- 
LOG FILE = "/var/log/sandbox/sandbox-sci-misc_-_h5utils-1.7.2-8817.log" 
 
chmod:     /usr/libexec/octave/2.1.69/site/oct/x86_64-pc-linux-gnu 
--------------------------------------------------------------------------------

Comment 1 Andrey 2005-10-18 02:05:08 UTC

Created attachment 70915 [details, diff]
patch for ebuild

Comment 2 Andrey 2005-10-18 02:06:01 UTC

Created attachment 70916 [details, diff]
patch for Makefile.in

Comment 3 Andrey 2005-10-18 02:06:24 UTC

Created attachment 70917 [details, diff]
patch for configure.in

Comment 4 Andrey 2005-10-18 02:07:53 UTC

Attached patches should fix the problem (at least they worked for me. :))

Comment 5 Olivier Fisette (RETIRED) gentoo-dev

2005-10-19 17:49:25 UTC

I was able to reproduce. This only happends if octave is installed. A USE flag 
is probably in order.

Comment 6 Olivier Fisette (RETIRED) gentoo-dev

2005-10-19 18:02:07 UTC

I just added version 1.10 to Portage. The provided patches are no longer valid 
with this version, unfortunately, so they will have to be rewritten.

Comment 7 Andrey 2005-10-20 00:12:26 UTC

Created attachment 71057 [details, diff]
configure.ac patch for h5utils-1.10

h5utils-1.10 uses automake, so only configure.ac have to be patched

Comment 8 Olivier Fisette (RETIRED) gentoo-dev

2005-10-20 16:40:59 UTC

Thanks for your work, Andrey. This is now fixed in Portage.

Comment 9 Andrey 2005-10-21 01:04:47 UTC

Did you forget to put 1.10-octave-path.patch into Portage? =)  
  
 * Cannot find $EPATCH_SOURCE!  Value for $EPATCH_SOURCE is: 
 * 
 *   /usr/portage/sci-misc/h5utils/files/1.10-octave-path.patch 
 *   ( 1.10-octave-path.patch )