Bug 101650 – emerge prosite-19.7 failed

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Juergen Rose 2005-08-07 09:15:01 UTC]

The installation of prosite-19.7 failed with:
>>> Unpacking prosite-19.7.tar.bz2 to /var/tmp/portage/prosite-19.7/work
>>> Source unpacked.

 * Indexing PROSITE for usage with EMBOSS.
Died: Unknown qualifier -infdat

!!! ERROR: sci-biology/prosite-19.7 failed.
!!! Function src_compile, Line 22, Exitcode 1
!!! Indexing PROSITE failed.


root@cheetah:/root(17)# emerge info
Portage 2.0.51.22-r2 (default-linux/x86/2005.0, gcc-3.4.4-hardened,
glibc-2.3.5-r1, 2.6.13-rc5 i686)
=================================================================
System uname: 2.6.13-rc5 i686 AMD Athlon(tm) XP 1800+
Gentoo Base System version 1.6.13
distcc 2.18.3 i686-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled]
ccache version 2.4 [disabled]
dev-lang/python:     2.3.5, 2.4.1-r1
sys-apps/sandbox:    1.2.12
sys-devel/autoconf:  2.13, 2.59-r7
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6
sys-devel/binutils:  2.16.1
sys-devel/libtool:   1.5.18-r1
virtual/os-headers:  2.6.11-r2
ACCEPT_KEYWORDS="x86 ~x86"
AUTOCLEAN="yes"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=athlon-xp -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.3/env
/usr/kde/3.3/share/config /usr/kde/3.3/shutdown /usr/kde/3.4/env
/usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3/share/config
/usr/lib/X11/xkb /usr/lib/mozilla/defaults/pref /usr/share/config
/var/qmail/control"
CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/texmf/web2c /etc/env.d"
CXXFLAGS="-O2 -march=athlon-xp -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig distlocks sandbox sfperms strict"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror
http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/
rsync://ftp.fi.muni.cz/pub/linux/gentoo
ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo
rsync://gd.tuwien.ac.at/opsys/linux/gentoo
ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo
ftp://ftp.tu-clausthal.de/pub/linux/gentoo http://gentoo.oregonstate.edu"
LINGUAS="de fr"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="x86 X Xaw3d aalib adns alsa apm arts avi berkdb bitmap-fonts cdr crypt
cscope cups curl dvd eds emboss encode esd fam flac foomaticdb fortran gd gdbm
ggi gif gnome gphoto2 gpm gstreamer gtk gtk2 guile imagemagick imlib ipv6 java
jpeg junit kde ldap libg++ libwww lirc mad mikmod motif mozilla mp3 mpeg mysql
nas ncurses nls nptl odbc ogg oggvorbis opengl oss pam pdflib perl plotutils png
postgres python qt quicktime readline ruby samba scanner sdl slang snmp speex
spell ssl svga tcltk tcpd tetex tiff truetype truetype-fonts type1-fonts vorbis
xine xml xml2 xmms xv zlib linguas_de linguas_fr userland_GNU kernel_linux
elibc_glibc"
Unset:  ASFLAGS, CTARGET, LANG, LC_ALL, LDFLAGS, PORTDIR_OVERLAY

[Comment 1 Olivier Fisette (RETIRED) 2005-08-07 10:56:53 UTC]

Hi Juergen,  
  
I suppose you just installed the brand new EMBOSS 3.0.0 (from the testing  
branch). A change in the Prosite database indexing program causes the bug you  
reported. Fortunately, I had already noticed and fixed it this morning. Just  
sync your tree and try to update Prosite again. 
 
If this does not fix your problem, feel free to reopen this bug.