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Gentoo's Bugzilla – Attachment 93118 Details for
Bug 142269
sci-biology/clover new ebuild
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the ebuild for clover
clover-20060717.ebuild (text/plain), 1.94 KB, created by
dawe
on 2006-07-31 05:09:08 UTC
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Description:
the ebuild for clover
Filename:
MIME Type:
Creator:
dawe
Created:
2006-07-31 05:09:08 UTC
Size:
1.94 KB
patch
obsolete
># Copyright 1999-2006 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 ># $Header: $ > >inherit toolchain-funcs > >DESCRIPTION="A program for identifying functional sites in DNA sequences" >HOMEPAGE="http://zlab.bu.edu/clover/" >BG_SEQ1="http://zlab.bu.edu/~mfrith/downloads/hs_chr20.mfa.gz" >BG_SEQ2="http://zlab.bu.edu/~mfrith/downloads/hs_upstream2000.fa.gz" >BG_SEQ3="http://zlab.bu.edu/~mfrith/downloads/hs_cpg.fa.gz" >BG_SEQ4="http://zlab.bu.edu/~mfrith/downloads/mm_chr19.mfa.gz" >BG_SEQ5="http://zlab.bu.edu/~mfrith/downloads/mm_upstream2000.fa.gz" >BG_SEQ6="http://zlab.bu.edu/~mfrith/downloads/dm_chr2R.fa.gz" >SRC_URI="http://zlab.bu.edu/~mfrith/downloads/clover-2006-07-17.tar.gz > ${BG_SEQ1} > ${BG_SEQ2} > ${BG_SEQ3} > ${BG_SEQ4} > ${BG_SEQ5} > ${BG_SEQ6} >" > >LICENSE="public-domain" >SLOT="0" >KEYWORDS="x86 ia64 amd64 alpha" >IUSE="" > >DEPEND="" >RDEPEND="" >S=${WORKDIR}/clover-2006-07-17 > >src_unpack() { > unpack ${A} > sed -i \ > "s:g++:$(tc-getCXX):" \ > ${S}/Makefile > sed -i \ > "s:-Wall -O3:${CFLAGS}:" \ > ${S}/Makefile >} > >src_install() { > dobin clover > dodir "/usr/share/clover" > insinto "/usr/share/clover" > doins ${FILESDIR}/jaspar2005core > doins ${WORKDIR}/*.fa > doins ${WORKDIR}/*.mfa >} > >pkg_postinst() { > echo > einfo "The motif library jaspar2005core has been" > einfo "put at the following path:" > einfo "/usr/share/clover/jaspar2005core" > einfo "You always have to specify this when running clover" > echo > einfo "The following background sequences" > einfo "files have been added into" > einfo "/usr/share/clover" > einfo "directory:" > einfo "Human chromosome 20 (44.1% C+G): hs_chr20.mfa" > einfo "Sequences 2000 bp upstream of human genes (49.8% C+G): hs_upstream2000.fa" > einfo "Human CpG islands (68.8% C+G, median length = 557 bp): hs_cpg.fa" > einfo "Mouse chromosome 19 (42.8% C+G): mm_chr19.mfa" > einfo "Sequences 2000 bp upstream of mouse genes (47.8% C+G): mm_upstream2000.fa" > einfo "Drosophila chromosome 2 arm R (43.5% C+G): dm_chr2R.fa" > echo >}
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bug 142269
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93119
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