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Gentoo's Bugzilla – Attachment 898701 Details for
Bug 936978
sci-chemistry/votca-2022.1-r1 fails to compile: dlpolytrajectoryreader.cc:24:10: fatal error: convenience.hpp: No such file or directory
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build.log
build.log (text/plain), 166.34 KB, created by
Agostino Sarubbo
on 2024-07-31 10:33:02 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2024-07-31 10:33:02 UTC
Size:
166.34 KB
patch
obsolete
> * Package: sci-chemistry/votca-2022.1-r1:0 > * Repository: gentoo > * Maintainer: sci-chemistry@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc gromacs kernel_linux python_single_target_python3_12 > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo/gentoo/commit/20070da7058fec69eb01ea0173c0b20f214eca9e (Wed Jul 31 09:24:23 UTC 2024) >@@@@@ END @@@@@ > > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This ebuild was merged (directly or as a dependency) because of the following commit: >https://github.com/gentoo/gentoo/commit/41430922a2bdba5646095b04c205740d80328b01 >@@@@@ END @@@@@ > > > >################## ># emerge --info: # >################## >Portage 3.0.65 (python 3.12.4-final-0, default/linux/amd64/23.0/split-usr, gcc-14, glibc-2.40, 6.1.87-gentoo-dist x86_64) >================================================================= >System uname: Linux-6.1.87-gentoo-dist-x86_64-AMD_EPYC_7513_32-Core_Processor-with-glibc2.40 >KiB Mem: 263449376 total, 91228880 free >KiB Swap: 0 total, 0 free >sh bash 5.2_p26-r8 >ld GNU ld (Gentoo 2.42 p6) 2.42.0 >app-misc/pax-utils: 1.3.7::gentoo >app-shells/bash: 5.2_p26-r8::gentoo >dev-build/autoconf: 2.72-r1::gentoo >dev-build/automake: 1.16.5-r2::gentoo >dev-build/cmake: 3.30.1::gentoo >dev-build/libtool: 2.4.7-r4::gentoo >dev-build/make: 4.4.1-r1::gentoo >dev-build/meson: 1.5.1::gentoo >dev-lang/perl: 5.40.0::gentoo >dev-lang/python: 3.10.14_p1-r1::gentoo, 3.11.9-r1::gentoo, 3.12.4_p2::gentoo, 3.13.0_beta4::gentoo >sys-apps/baselayout: 2.15::gentoo >sys-apps/sandbox: 2.39::gentoo >sys-devel/binutils: 2.42-r2::gentoo >sys-devel/binutils-config: 5.5.2::gentoo >sys-devel/gcc: 14.1.1_p20240720::gentoo >sys-devel/gcc-config: 2.11::gentoo >sys-kernel/linux-headers: 6.9::gentoo (virtual/os-headers) >sys-libs/glibc: 2.40::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > volatile: True > sync-rsync-verify-jobs: 1 > sync-rsync-extra-opts: > sync-rsync-verify-metamanifest: yes > sync-rsync-verify-max-age: 3 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* Apache-2.0" >CBUILD="x86_64-pc-linux-gnu" >CFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXXFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >DISTDIR="/var/tmp/portage/sci-chemistry/votca-2022.1-r1/distdir" >EMERGE_DEFAULT_OPTS="--complete-graph y --with-bdeps=y -1 -k -b --backtrack=100" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" >FCFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" >LANG="en_US.utf8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0" >LEX="flex" >MAKEOPTS="-j63" >PKGDIR="/root/tbci/binpkg" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >SHELL="/bin/bash" >USE="acl amd64 bzip2 cet crypt debug elogind gdbm gromacs iconv ipv6 jumbo-build libtirpc multilib native-symlinks ncurses nls openmp pam pcre readline seccomp split-usr ssl test-rust unicode verify-sig xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" PYTHON_SINGLE_TARGET="python3_12" >Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS > > > > > >############################## ># emerge history (qlop -mv): # >############################## >2024-07-31T11:26:07 >>> sys-apps/hwdata-0.383 >2024-07-31T11:26:08 >>> dev-cpp/eigen-3.4.0-r3 >2024-07-31T11:26:08 >>> sys-libs/zlib-1.3.1-r1 >2024-07-31T11:26:20 >>> dev-build/b2-5.2.1 >2024-07-31T11:26:20 >>> virtual/fortran-0-r1 >2024-07-31T11:26:19 >>> sci-libs/fftw-3.3.10 >2024-07-31T11:26:21 >>> dev-cpp/muParser-2.3.4-r1 >2024-07-31T11:26:21 >>> x11-libs/libpciaccess-0.18.1 >2024-07-31T11:26:22 >>> sys-apps/pciutils-3.13.0 >2024-07-31T11:26:22 >>> sci-libs/lmfit-9.0-r1 >2024-07-31T11:26:22 >>> sci-libs/hdf5-1.14.4_p2 >2024-07-31T11:28:12 >>> dev-libs/boost-1.85.0-r1 >2024-07-31T11:28:13 >>> sys-apps/hwloc-2.9.3-r1 >2024-07-31T11:28:13 >>> sci-libs/libxc-5.1.7 >2024-07-31T11:29:07 >>> sci-chemistry/gromacs-2024.2 >2024-07-31T11:29:08 >>> sci-libs/libint-2.9.0 > > > > >####################################### ># installed packages (qlist -ICvUSS): # >####################################### >acct-group/audio-0-r3:0 >acct-group/cdrom-0-r3:0 >acct-group/dialout-0-r3:0 >acct-group/disk-0-r3:0 >acct-group/floppy-0-r1:0 >acct-group/input-0-r3:0 >acct-group/kmem-0-r3:0 >acct-group/kvm-0-r3:0 >acct-group/lp-0-r3:0 >acct-group/man-0-r3:0 >acct-group/messagebus-0-r3:0 >acct-group/polkitd-0-r3:0 >acct-group/portage-0-r2:0 >acct-group/render-0-r3:0 >acct-group/root-0-r2:0 >acct-group/sgx-0-r2:0 >acct-group/sshd-0-r3:0 >acct-group/tape-0-r3:0 >acct-group/tty-0-r3:0 >acct-group/usb-0-r3:0 >acct-group/video-0-r3:0 >acct-user/man-1-r3:0 >acct-user/messagebus-0-r3:0 >acct-user/polkitd-0-r3:0 >acct-user/portage-0-r3:0 >acct-user/sshd-0-r3:0 >app-admin/eselect-1.4.27-r1:0 -doc -emacs -vim-syntax >app-admin/perl-cleaner-2.31-r2:0 -pkgcore >app-alternatives/awk-4:0 -busybox gawk -mawk -nawk split-usr >app-alternatives/bc-0:0 -gh gnu >app-alternatives/bzip2-1:0 -lbzip2 -pbzip2 reference split-usr >app-alternatives/cpio-0:0 gnu -libarchive split-usr >app-alternatives/gzip-1:0 -pigz reference split-usr >app-alternatives/lex-0-r1:0 flex -reflex >app-alternatives/ninja-1:0 reference -samurai >app-alternatives/sh-0:0 bash -busybox -dash -ksh -lksh -mksh >app-alternatives/tar-0:0 gnu -libarchive split-usr >app-alternatives/yacc-1-r2:0 bison -byacc -reference >app-arch/bzip2-1.0.8-r5:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static -static-libs verify-sig >app-arch/cpio-2.15:0 nls >app-arch/gzip-1.13-r1:0 -pic -static verify-sig >app-arch/libarchive-3.7.4:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -test verify-sig xattr zstd >app-arch/tar-1.35:0 acl -minimal nls -selinux verify-sig xattr >app-arch/unzip-6.0_p27-r1:0 bzip2 -natspec unicode >app-arch/xz-utils-5.6.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_crc32 -doc extra-filters nls -pgo -static-libs verify-sig >app-arch/zstd-1.5.6:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 lzma -static-libs -test zlib >app-crypt/gnupg-2.4.5-r2:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket verify-sig -wks-server >app-crypt/gpgme-1.23.2:1/11.6.15.2 -common-lisp cxx debug -python python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -qt5 -qt6 -static-libs -test verify-sig >app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs >app-crypt/libmd-1.1.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >app-crypt/pinentry-1.3.1:0 -X -caps -efl -emacs -gtk -keyring ncurses -qt5 -qt6 verify-sig -wayland >app-crypt/rhash-1.4.4-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug nls ssl -static-libs >app-editors/nano-8.1:0 -debug -justify -magic -minimal ncurses nls spell unicode >app-eselect/eselect-fontconfig-20220403:0 >app-eselect/eselect-iptables-20220320:0 >app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0 >app-eselect/eselect-pinentry-0.7.4:0 >app-i18n/man-pages-ja-20180315-r2:0 >app-i18n/man-pages-l10n-4.19.0:0 l10n_cs l10n_da l10n_de l10n_el l10n_es l10n_fi l10n_fr l10n_hu l10n_id l10n_it l10n_mk l10n_nb l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_ru l10n_sr l10n_sv l10n_uk l10n_vi >app-i18n/man-pages-zh_CN-1.6.4.0:0 >app-misc/ca-certificates-20240203.3.98:0 -cacert >app-misc/editor-wrapper-4-r1:0 >app-misc/mime-types-2.1.54:0 -nginx >app-misc/pax-utils-1.3.7:0 -caps -man -python -python_single_target_python3_10 -python_single_target_python3_11 python_single_target_python3_12 -seccomp -test >app-misc/tmux-3.4-r1:0 debug -selinux -systemd -utempter -vim-syntax >app-portage/eix-0.36.7-r1:0 debug -doc nls -sqlite >app-portage/elt-patches-20240721:0 >app-portage/gemato-20.6:0 gpg -pretty-log python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test -tools >app-portage/gentoolkit-0.6.7:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test >app-portage/getuto-1.13:0 -test >app-portage/portage-utils-0.97:0 openmp qmanifest -static >app-shells/bash-5.2_p26-r8:0 -afs -bashlogger -examples -mem-scramble net nls -pgo -plugins readline verify-sig >app-shells/bash-completion-2.14.0-r1:0 eselect -test >app-shells/gentoo-bashcomp-20240625:0 >app-shells/push-3.4:0 >app-shells/quoter-4.2:0 >app-text/ansifilter-2.20:0 -gui verify-sig >app-text/asciidoc-10.2.0:0 -python_single_target_pypy3 -python_single_target_python3_10 -python_single_target_python3_11 python_single_target_python3_12 >app-text/build-docbook-catalog-2.4:0 >app-text/docbook-xml-dtd-4.5-r2:4.5 >app-text/docbook-xml-dtd-4.4-r3:4.4 >app-text/docbook-xml-dtd-4.2-r3:4.2 >app-text/docbook-xml-dtd-4.1.2-r7:4.1.2 >app-text/docbook-xsl-ns-stylesheets-1.79.1:0 -ruby >app-text/docbook-xsl-stylesheets-1.79.1-r4:0 -ruby >app-text/manpager-1:0 >app-text/opensp-1.5.2-r10:0 -doc nls -static-libs -test >app-text/po4a-0.73:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test -test >app-text/sgml-common-0.6.3-r7:0 >app-text/xmlto-0.0.28-r11:0 -latex text >dev-build/autoconf-2.72-r1:2.72 -emacs verify-sig >dev-build/autoconf-archive-2023.02.20:0 >dev-build/autoconf-wrapper-20231224:0 >dev-build/automake-1.16.5-r2:1.16 -test verify-sig >dev-build/automake-wrapper-20240607:0 >dev-build/b2-5.2.1:0 -examples >dev-build/cmake-3.30.1:0 -dap -doc -gui ncurses -qt6 -test verify-sig >dev-build/gtk-doc-am-1.33.2:0 >dev-build/libtool-2.4.7-r4:2 -vanilla >dev-build/make-4.4.1-r1:0 -doc -guile nls -static -test verify-sig >dev-build/meson-1.5.1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test verify-sig >dev-build/meson-format-array-0:0 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 >dev-build/ninja-1.11.1-r5:0 -doc -test >dev-cpp/eigen-3.4.0-r3:3 -adolc -boost -cholmod -clang -cpu_flags_arm_neon -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_avx512dq -cpu_flags_x86_avx512f cpu_flags_x86_f16c cpu_flags_x86_fma3 cpu_flags_x86_popcnt cpu_flags_x86_sse cpu_flags_x86_sse2 cpu_flags_x86_sse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2 cpu_flags_x86_ssse3 -cuda debug -doc -fftw -hip -klu -lapack -mathjax -opengl openmp -pastix -sparsehash -spqr -superlu -test -umfpack >dev-cpp/muParser-2.3.4-r1:0 -doc openmp -test >dev-db/sqlite-3.46.0:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools >dev-lang/duktape-2.7.0-r3:0/2.7.0 >dev-lang/perl-5.40.0:0/5.40 -berkdb -doc gdbm -minimal -perl_features_debug -perl_features_ithreads -perl_features_quadmath >dev-lang/python-3.13.0_beta4:3.13 -bluetooth -build debug ensurepip -examples gdbm gil -jit -libedit llvm_slot_18 ncurses -pgo readline sqlite ssl -test -tk -valgrind verify-sig >dev-lang/python-3.12.4_p2:3.12 -bluetooth -build debug ensurepip -examples gdbm -libedit ncurses -pgo readline sqlite ssl -test -tk -valgrind verify-sig >dev-lang/python-3.11.9-r1:3.11 -bluetooth -build debug ensurepip -examples gdbm -libedit ncurses -pgo readline sqlite ssl -test -tk -valgrind verify-sig >dev-lang/python-3.10.14_p1-r1:3.10 -bluetooth -build debug ensurepip -examples gdbm -libedit ncurses -pgo readline sqlite ssl -test -tk -valgrind verify-sig >dev-lang/python-exec-2.4.10:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 python_targets_python3_13 -test >dev-lang/python-exec-conf-2.4.6:2 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 >dev-lang/tcl-8.6.14:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug threads >dev-libs/boehm-gc-8.2.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx large -static-libs threads >dev-libs/boost-1.85.0-r1:0/1.85.0.1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 context debug -doc -icu -lzma -mpi nls -numpy python python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 stacktrace -tools zlib -zstd >dev-libs/elfutils-0.191-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -debuginfod -lzma nls -static-libs -test utils verify-sig -zstd >dev-libs/expat-2.6.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs -test unicode >dev-libs/glib-2.78.6:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus debug elf -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr >dev-libs/gmp-6.3.0-r1:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpudetection cxx -doc -pic -static-libs >dev-libs/gobject-introspection-1.78.1:0 -doctool -gtk-doc -python_single_target_python3_10 -python_single_target_python3_11 python_single_target_python3_12 -python_single_target_python3_13 -test >dev-libs/gobject-introspection-common-1.78.1:0 >dev-libs/isl-0.26:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/jsoncpp-1.9.5:0/25 -doc -test >dev-libs/libassuan-3.0.0:0/3.0 verify-sig >dev-libs/libatomic_ops-7.8.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 >dev-libs/libevent-2.1.12-r1:0/2.1-7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 clock-gettime debug -malloc-replacement ssl -static-libs -test -verbose-debug verify-sig >dev-libs/libffi-3.4.6:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -exec-static-trampoline -pax-kernel -static-libs -test >dev-libs/libgcrypt-1.11.0:0/20 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_arm_sve -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_avx512f -cpu_flags_x86_padlock -cpu_flags_x86_sha cpu_flags_x86_sse4_1 -doc getentropy -static-libs verify-sig >dev-libs/libgpg-error-1.50:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -common-lisp nls -static-libs -test verify-sig >dev-libs/libksba-1.6.7:0 -static-libs verify-sig >dev-libs/libpcre2-10.44-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 jit -libedit pcre16 pcre32 readline -static-libs unicode -valgrind verify-sig zlib >dev-libs/libpipeline-1.5.7:0 -test >dev-libs/libtasn1-4.19.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test verify-sig >dev-libs/libunistring-1.2:0/5 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs >dev-libs/libuv-1.48.0:0/1 verify-sig >dev-libs/libxml2-2.12.8:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -examples ftp -icu -lzma python python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 readline -static-libs -test >dev-libs/libxslt-1.1.39:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 crypt debug -examples -python python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -static-libs >dev-libs/lzo-2.10:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples split-usr -static-libs >dev-libs/mpc-1.3.1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/mpdecimal-4.0.0:4 -cxx -test >dev-libs/mpfr-4.2.1:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs verify-sig >dev-libs/nettle-3.10:0/8-6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_pclmul -cpu_flags_x86_sha -doc gmp -static-libs verify-sig >dev-libs/npth-1.7-r1:0 -test >dev-libs/openssl-3.3.1-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpu_flags_x86_sse2 -fips -ktls -quic -rfc3779 -sctp -static-libs -test -tls-compression -vanilla verify-sig -verify-sig -weak-ssl-ciphers >dev-libs/popt-1.19-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs >dev-perl/Capture-Tiny-0.480.0-r1:0 -examples -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Class-Inspector-1.360.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Config-AutoConf-0.320.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Encode-EUCJPASCII-0.30.0-r1:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Encode-HanExtra-0.230.0-r3:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath >dev-perl/Encode-Locale-1.50.0-r1:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Exporter-Tiny-1.6.2:0 -examples -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/ExtUtils-CChecker-0.120.0-r1:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/File-BaseDir-0.90.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/File-DesktopEntry-0.220.0-r1:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/File-MimeInfo-0.330.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/File-ShareDir-1.118.0:0 -minimal -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/File-ShareDir-Install-0.140.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test -test >dev-perl/File-Slurper-0.14.0:0 -examples -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/IO-Socket-SSL-2.88.0:0 -examples -idn -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/IPC-System-Simple-1.300.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/List-MoreUtils-0.430.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test xs >dev-perl/List-MoreUtils-XS-0.430.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Locale-gettext-1.70.0-r1:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/MIME-Charset-1.13.1:0 l10n_ja l10n_zh -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Module-Build-0.423.400:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Net-SSLeay-1.940.0:0 -examples -examples -minimal -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Params-Util-1.102.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/PerlIO-utf8_strict-0.10.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Pod-Parser-1.660.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Regexp-IPv6-0.30.0-r2:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/SGMLSpm-1.1-r2:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Syntax-Keyword-Try-0.290.0-r1:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/TermReadKey-2.380.0-r1:0 -examples -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Text-CharWidth-0.40.0-r2:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Text-WrapI18N-0.60.0-r2:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/Unicode-LineBreak-2019.1.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath >dev-perl/URI-5.280.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/XS-Parse-Keyword-0.430.0:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-perl/YAML-Tiny-1.740.0:0 -minimal -perl_features_debug -perl_features_ithreads -perl_features_quadmath -test >dev-python/backports-tarfile-1.2.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 -test >dev-python/certifi-3024.7.22:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test >dev-python/charset-normalizer-3.3.2:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test >dev-python/cython-3.0.10:0 debug -doc python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 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>dev-python/markupsafe-2.1.5:0 debug python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test >dev-python/more-itertools-10.3.0:0 -doc python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test >dev-python/ordered-set-4.1.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test >dev-python/packaging-24.1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test >dev-python/pathspec-0.12.1:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test >dev-python/platformdirs-4.2.2:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test >dev-python/pluggy-1.5.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test >dev-python/pypy3-7.3.16:0/pypy310-pp73-384 gdbm ncurses sqlite -tk >dev-python/pypy3_10-7.3.16:0/pypy310-pp73-384 ensurepip gdbm jit ncurses sqlite -tk >dev-python/pypy3_10-exe-bin-7.3.16:7.3.16 >dev-python/PySocks-1.7.1-r2:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 >dev-python/requests-2.32.3:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -socks5 -test test-rust >dev-python/setuptools-72.1.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 -test >dev-python/setuptools-scm-8.1.0:0 python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 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-abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 native-symlinks -test >dev-util/re2c-3.1:0 debug -test >dev-vcs/git-2.45.2:0 blksha1 -cgi curl -cvs -doc gpg -highlight iconv -keyring -mediawiki nls pcre -perforce -perl -python_single_target_python3_10 -python_single_target_python3_11 python_single_target_python3_12 -python_single_target_python3_13 safe-directory -selinux -subversion -test -tk webdav -xinetd >media-fonts/liberation-fonts-2.1.5:0 -X -X -fontforge >media-gfx/graphite2-1.3.14_p20210810-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -perl -test >media-libs/fontconfig-2.15.0:1.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc nls -test >media-libs/freetype-2.13.2:2 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adobe-cff -brotli bzip2 cleartype-hinting debug -doc -fontforge harfbuzz png -static-libs -svg -utils >media-libs/harfbuzz-9.0.0:0/6.0.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 cairo debug -doc -experimental glib graphite -icu introspection -test truetype >media-libs/libpng-1.6.43:0/16 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -apng -cpu_flags_arm_neon cpu_flags_x86_sse -static-libs -test >net-dns/c-ares-1.32.2:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test verify-sig >net-dns/libidn2-2.3.7:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs verify-sig >net-firewall/iptables-1.8.10-r1:0/1.8.3 -conntrack -netlink -nftables -pcap -static-libs -test >net-libs/gnutls-3.8.6-r1:0/30.30 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -brotli cxx -dane -doc -examples idn nls openssl -pkcs11 seccomp -sslv2 -sslv3 -static-libs -test -test-full tls-heartbeat -tools verify-sig zlib -zstd >net-libs/libmnl-1.0.5:0/0.2.0 -examples verify-sig >net-libs/libnsl-2.0.1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >net-libs/libpsl-0.21.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -icu idn -test >net-libs/libtirpc-1.3.4-r2:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -kerberos -static-libs >net-libs/nghttp2-1.62.1:0/1.14 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -hpack-tools -jemalloc -static-libs -systemd -test -utils -xml >net-misc/curl-8.9.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adns alt-svc -brotli -curl_quic_ngtcp2 -curl_quic_openssl -curl_ssl_gnutls -curl_ssl_mbedtls curl_ssl_openssl -curl_ssl_rustls debug ftp -gnutls -gopher hsts http2 -http3 -idn imap -kerberos -ldap -mbedtls openssl pop3 progress-meter psl -quic -rtmp -rustls -samba smtp -ssh ssl -sslv3 -static-libs -telnet -test tftp verify-sig -websockets -zstd >net-misc/dhcpcd-10.0.8:0 debug embedded ipv6 -privsep udev >net-misc/iputils-20240117:0 arping -caps -clockdiff -doc filecaps -idn nls -test -tracepath >net-misc/netifrc-0.7.8-r1:0 dhcp >net-misc/openssh-9.8_p1-r2:0 -abi_mips_n32 -audit -debug -kerberos -ldns -libedit -livecd pam -pie -security-key -selinux ssl -static -test verify-sig -xmss >net-misc/rsync-3.3.0-r1:0 acl -examples iconv -lz4 -python_single_target_python3_10 -python_single_target_python3_11 python_single_target_python3_12 -rrsync ssl -stunnel -system-zlib verify-sig xattr -xxhash -zstd >net-misc/wget-1.24.5:0 -cookie-check debug -gnutls -idn ipv6 -libproxy -metalink nls -ntlm pcre ssl -static -test -uuid verify-sig zlib >perl-core/File-Temp-0.231.100-r1:0 -perl_features_debug -perl_features_ithreads -perl_features_quadmath >sci-chemistry/gromacs-2024.2:0/2024.2 -blas -build-manual -clang -clang-cuda -cpu_flags_arm_neon cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_avx512f -cpu_flags_x86_fma4 cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 -cuda custom-cflags doc -double-precision fftw gmxapi gmxapi-legacy hwloc -lapack -mkl -mpi offensive -opencl openmp -python -python_single_target_python3_10 -python_single_target_python3_11 python_single_target_python3_12 single-precision -test threads tng >sci-libs/fftw-3.3.10:3.0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_fma3 -cpu_flags_x86_fma4 cpu_flags_x86_sse cpu_flags_x86_sse2 -doc -fortran -mpi openmp -test threads -zbus >sci-libs/hdf5-1.14.4_p2:0/1.14.4 cxx debug -examples -fortran hl -mpi -szip -test -threads -unsupported zlib >sci-libs/libint-2.9.0:2 -doc -static-libs >sci-libs/libxc-5.1.7:0 -fortran -test >sci-libs/lmfit-9.0-r1:0/9 >sec-keys/openpgp-keys-alejandro-colomar-20231031:0 >sec-keys/openpgp-keys-andresimon-20230830:0 >sec-keys/openpgp-keys-bison-20220407:0 >sec-keys/openpgp-keys-bradhouse-20240624:0 >sec-keys/openpgp-keys-bradking-20230817:0 >sec-keys/openpgp-keys-bzip2-20220406:0 >sec-keys/openpgp-keys-chetramey-20220406:0 >sec-keys/openpgp-keys-coreutils-20220407:0 >sec-keys/openpgp-keys-danielstenberg-20220330:0 >sec-keys/openpgp-keys-diffutils-20220407:0 >sec-keys/openpgp-keys-elfutils-20240301:0 >sec-keys/openpgp-keys-file-20220611:0 >sec-keys/openpgp-keys-findutils-20220407:0 >sec-keys/openpgp-keys-gawk-20220407:0 >sec-keys/openpgp-keys-gdbm-20220407:0 >sec-keys/openpgp-keys-gentoo-release-20240703:0 -test >sec-keys/openpgp-keys-gettext-20220407:0 >sec-keys/openpgp-keys-gnupg-20220210:0 >sec-keys/openpgp-keys-gnutls-20240415:0 >sec-keys/openpgp-keys-grep-20220407:0 >sec-keys/openpgp-keys-gzip-20220406:0 >sec-keys/openpgp-keys-jimmeyering-20220407:0 >sec-keys/openpgp-keys-jpakkane-20231105:0 >sec-keys/openpgp-keys-karelzak-20230517:0 >sec-keys/openpgp-keys-lassecollin-20240529:0 >sec-keys/openpgp-keys-libarchive-20221209:0 >sec-keys/openpgp-keys-libevent-0:0 >sec-keys/openpgp-keys-libidn-20240114:0 >sec-keys/openpgp-keys-libtasn1-20220824:0 >sec-keys/openpgp-keys-libuv-20240209:0 >sec-keys/openpgp-keys-m4-20220407:0 >sec-keys/openpgp-keys-madler-20220328:0 >sec-keys/openpgp-keys-make-20220407:0 >sec-keys/openpgp-keys-netfilter-20220326:0 >sec-keys/openpgp-keys-nettle-20220603:0 >sec-keys/openpgp-keys-openssh-20220316:0 >sec-keys/openpgp-keys-openssl-20240424:0 >sec-keys/openpgp-keys-patch-20220407:0 >sec-keys/openpgp-keys-philiphazel-20220416:0 >sec-keys/openpgp-keys-python-20221025:0 >sec-keys/openpgp-keys-sed-20220407:0 >sec-keys/openpgp-keys-sysvinit-20220413:0 >sec-keys/openpgp-keys-tar-20220406:0 >sec-keys/openpgp-keys-thomasdickey-20240114:0 >sec-keys/openpgp-keys-vincentlefevre-20221213:0 >sec-keys/openpgp-keys-waynedavison-20220329:0 >sec-keys/openpgp-keys-wget-20240415:0 >sec-keys/openpgp-keys-zackweinberg-20231223:0 >sys-apps/acl-2.3.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs >sys-apps/attr-2.5.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug nls -static-libs >sys-apps/baselayout-2.15:0 -build split-usr >sys-apps/coreutils-9.5:0 acl -caps -gmp -hostname -kill -multicall nls openssl -selinux split-usr -static -test -vanilla verify-sig xattr >sys-apps/dbus-1.15.8:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -doc elogind -selinux -static-libs -systemd -test -test -valgrind >sys-apps/diffutils-3.10:0 nls verify-sig >sys-apps/file-5.45-r4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzip -lzma -python python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -seccomp -static-libs verify-sig zlib -zstd >sys-apps/findutils-4.10.0:0 nls -selinux -static -test verify-sig >sys-apps/gawk-5.3.0-r1:0 -mpfr nls -pma readline verify-sig >sys-apps/gentoo-functions-1.6-r1:0 -test >sys-apps/grep-3.11-r1:0 egrep-fgrep nls pcre -static verify-sig >sys-apps/groff-1.23.0:0 -X -examples -uchardet >sys-apps/help2man-1.49.3:0 nls >sys-apps/hwdata-0.383:0 >sys-apps/hwloc-2.9.3-r1:0/15 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cairo cpuid -cuda debug -doc -l0 -nvml pci -rocm -static-libs -svg -udev -valgrind -video_cards_nvidia -xml >sys-apps/install-xattr-0.8-r1:0 >sys-apps/iproute2-6.10.0:0 -atm -berkdb -bpf -caps -elf iptables -minimal -nfs -selinux >sys-apps/kbd-2.6.4:0 nls pam -selinux -test >sys-apps/kmod-32-r2:0 debug -doc lzma -pkcs7 -static-libs tools zlib zstd >sys-apps/less-661:0 pcre -test >sys-apps/locale-gen-2.23-r1:0 >sys-apps/man-db-2.12.1:0 manpager nls seccomp -selinux -static-libs zlib >sys-apps/man-pages-6.06:0 l10n_cs l10n_da l10n_de l10n_el l10n_es l10n_fi l10n_fr l10n_hu l10n_id l10n_it l10n_ja l10n_mk l10n_nb l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_ru l10n_sr l10n_sv l10n_uk l10n_vi l10n_zh-CN verify-sig >sys-apps/miscfiles-1.5-r4:0 -minimal >sys-apps/net-tools-2.10:0 arp hostname ipv6 -nis nls -plipconfig -selinux -slattach -static >sys-apps/openrc-navi-0.60_beta3:0 -audit -bash -caps debug netifrc -newnet pam -s6 -selinux -sysv-utils sysvinit unicode >sys-apps/pciutils-3.13.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dns kmod -static-libs udev zlib >sys-apps/portage-3.0.65-r1:0 -apidoc -build -doc -gentoo-dev ipc 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>sys-devel/binutils-config-5.5.2:0 native-symlinks >sys-devel/bison-3.8.2-r2:0 -examples nls -static -test verify-sig >sys-devel/flex-2.6.4-r6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static -test >sys-devel/gcc-14.1.1_p20240720:14 -ada cet -custom-cflags cxx -d -debug default-stack-clash-protection default-znow -doc -fixed-point fortran -go graphite -hardened -ieee-long-double -jit -libssp lto -modula2 multilib nls -objc -objc++ -objc-gc openmp -pch -pgo pie -rust sanitize ssp -systemtap -test -valgrind -vanilla -vtv zstd >sys-devel/gcc-config-2.11:0 cc-wrappers native-symlinks >sys-devel/gettext-0.22.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl cxx -doc -emacs -git -java -java ncurses nls openmp -static-libs verify-sig xattr >sys-devel/gnuconfig-20240101:0 >sys-devel/m4-1.4.19-r2:0 -examples nls verify-sig >sys-devel/patch-2.7.6-r5:0 -static -test verify-sig xattr >sys-fs/e2fsprogs-1.47.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -archive -cron -fuse nls -static-libs -test tools >sys-fs/udev-init-scripts-35:0 >sys-kernel/dracut-103-r2:0 -selinux -test >sys-kernel/gentoo-kernel-bin-6.1.102:6.1.102 initramfs -test >sys-kernel/installkernel-44:0 dracut -efistub -grub -refind -systemd -systemd-boot -ugrd -uki -ukify >sys-kernel/linux-headers-6.9:0 -headers-only >sys-libs/gdbm-1.24:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs -test verify-sig >sys-libs/glibc-2.40:2.2 -audit -caps cet -compile-locales -custom-cflags -doc -gd -hash-sysv-compat -headers-only multiarch multilib -multilib-bootstrap -nscd -perl -profile -selinux ssp stack-realign static-libs -suid -systemd -systemtap -test -vanilla >sys-libs/libcap-2.70:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam -static-libs -tools >sys-libs/libseccomp-2.5.5-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -experimental-loong -python python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -static-libs -test >sys-libs/libxcrypt-4.4.36-r3:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 compat -headers-only -static-libs system -test >sys-libs/ncurses-6.4_p20240414:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx debug -doc -gpm -minimal -profile split-usr -split-usr stack-realign -static-libs -test tinfo -trace verify-sig >sys-libs/pam-1.6.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug -examples filecaps -nis -selinux >sys-libs/readline-8.2_p10:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs unicode -utils verify-sig >sys-libs/timezone-data-2024a-r1:0 -leaps-timezone nls -zic-slim >sys-libs/zlib-1.3.1-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 minizip -static-libs verify-sig >sys-process/procps-4.0.4-r1:0/0-ng -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux -static-libs -systemd -test unicode >sys-process/psmisc-23.7:0 -X -apparmor nls -selinux -test >virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/dev-manager-0-r2:0 >virtual/dist-kernel-6.1.102:0/6.1.102 >virtual/editor-0-r7:0 >virtual/fortran-0-r1:0 openmp >virtual/libc-1-r1:0 >virtual/libcrypt-2-r1:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/libelf-3-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libudev-251-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd >virtual/man-0-r4:0 >virtual/openssh-0:0 ssl >virtual/os-headers-0-r2:0 >virtual/package-manager-1:0 >virtual/pager-0-r1:0 >virtual/perl-Carp-1.540.0-r1:0 >virtual/perl-CPAN-2.360.0-r1:0 >virtual/perl-CPAN-Meta-2.150.10-r8:0 >virtual/perl-CPAN-Meta-YAML-0.18.0-r10:0 >virtual/perl-Data-Dumper-2.189.0:0 >virtual/perl-Encode-3.210.0-r1:0 >virtual/perl-Exporter-5.780.0:0 >virtual/perl-ExtUtils-CBuilder-0.280.240:0 >virtual/perl-ExtUtils-Install-2.220.0-r1:0 >virtual/perl-ExtUtils-MakeMaker-7.700.0-r1:0 >virtual/perl-ExtUtils-Manifest-1.750.0:0 >virtual/perl-ExtUtils-ParseXS-3.510.0-r1:0 >virtual/perl-File-Path-2.180.0-r3:0 >virtual/perl-File-Spec-3.900.0:0 >virtual/perl-File-Temp-0.231.100-r1:0 >virtual/perl-Getopt-Long-2.570.0-r1:0 >virtual/perl-IO-1.550.0:0 >virtual/perl-IPC-Cmd-1.40.0-r4:0 >virtual/perl-JSON-PP-4.160.0-r2:0 >virtual/perl-libnet-3.150.0-r1:0 ssl >virtual/perl-Math-BigInt-2.3.2:0 >virtual/perl-MIME-Base64-3.160.100_rc-r1:0 >virtual/perl-Module-Metadata-1.0.38:0 >virtual/perl-parent-0.241.0-r1:0 >virtual/perl-Parse-CPAN-Meta-2.150.10-r8:0 >virtual/perl-Perl-OSType-1.10.0-r8:0 >virtual/perl-podlators-5.10.200_rc:0 >virtual/perl-Scalar-List-Utils-1.630.0-r1:0 >virtual/perl-Test-Harness-3.480.0:0 >virtual/perl-Text-ParseWords-3.310.0-r3:0 >virtual/perl-Unicode-Collate-1.310.0-r2:0 >virtual/perl-version-0.993.0:0 >virtual/perl-XSLoader-0.320.0-r1:0 >virtual/pkgconfig-3:0 native-symlinks >virtual/service-manager-1-r2:0 >virtual/ssh-0-r2:0 -minimal >virtual/tmpfiles-0-r5:0 -systemd >virtual/ttf-fonts-1-r2:0 >virtual/udev-217-r7:0 -systemd >virtual/w3m-1:0 >www-client/pybugz-0.14:0 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -python_targets_python3_13 >www-client/w3m-0.5.3_p20230121:0 -X -fbcon -gdk-pixbuf -gpm -imlib l10n_ja -lynxkeymap nls -nntp ssl unicode -xface >x11-base/xcb-proto-1.17.0:0 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 >x11-base/xorg-proto-2024.1:0 -test >x11-libs/cairo-1.18.0:0 X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug glib -gtk-doc -test >x11-libs/libpciaccess-0.18.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 zlib >x11-libs/libX11-1.8.10:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/libXau-1.0.11:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libxcb-1.17.0:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb >x11-libs/libXdmcp-1.1.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXext-1.3.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXrender-0.9.11:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/pixman-0.43.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test >x11-libs/xtrans-1.5.0:0 -doc >x11-misc/compose-tables-1.8.10:0 >x11-misc/shared-mime-info-2.4-r1:0 -test >x11-misc/xdg-utils-1.2.1-r6:0 -X -dbus -doc -gnome -plasma > > >############# ># build.log # >############# > > * Using python3.12 to build >>>> Unpacking source... >>>> Unpacking votca-2022.1.tar.gz to /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work >>>> Source unpacked in /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work >>>> Preparing source in /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1 ... > * Fixing shebang in ./xtp/share/benchmark/xtp_benchmark.in. > * Fixing shebang in ./xtp/scripts/xtp_update_mapfile.in. > * Fixing shebang in ./xtp/scripts/xtp_qmmm2qm.in. > * Fixing shebang in ./xtp/scripts/xtp_modify_jobfile.in. > * Fixing shebang in ./xtp/scripts/xtp_basisset.in. > * Fixing shebang in ./xtp/scripts/xtp_autogen_mapping.in. > * Fixing shebang in ./xtp-tutorials/GROMACS/KMC_Methane/change_energy.py. > * Fixing shebang in ./tools/scripts/votca_help2doc.in. > * Fixing shebang in ./tools/scripts/votca_compare.in. > * Fixing shebang in ./share/doc/extract_xml_metadata.py. > * Fixing shebang in ./csg/share/scripts/inverse/table_smooth_at_cut_off.py. > * Fixing shebang in ./csg/share/scripts/inverse/iie.py. > * Fixing shebang in ./csg/share/scripts/inverse/cma_processor.py. > * Fixing shebang in ./csg-tutorials/spce/ibi_hoomd-blue/spce.py. > * Fixing shebang in ./csg-tutorials/spce/ibi_espresso/spce.py. > * Fixing shebang in ./csg-tutorials/LJ1-LJ2/imc/svd.py. > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build" > * Hardcoded definition(s) removed in CMakeLists.txt: > * set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build, option > * Hardcoded definition(s) removed in xtp/CMakeLists.txt: > * set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build, option > * Hardcoded definition(s) removed in tools/CMakeLists.txt: > * set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build, option > * Hardcoded definition(s) removed in csg/CMakeLists.txt: > * set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build, option >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1 ... > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build" >cmake -C /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DENABLE_TESTING=no -DCMAKE_DISABLE_FIND_PACKAGE_GROMACS=no -DBUILD_CSGAPPS=ON -DINSTALL_RC_FILES=OFF -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/gentoo_toolchain.cmake /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1 >loading initial cache file /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/gentoo_common_config.cmake >-- The CXX compiler identification is GNU 14.1.1 >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - skipped >-- Detecting CXX compile features >-- Detecting CXX compile features - done >-- Performing Test COMPILER_SUPPORTS-Wall >-- Performing Test COMPILER_SUPPORTS-Wall - Success >-- Performing Test COMPILER_SUPPORTS-Wextra >-- Performing Test COMPILER_SUPPORTS-Wextra - Success >-- Performing Test COMPILER_SUPPORTS-Wpedantic >-- Performing Test COMPILER_SUPPORTS-Wpedantic - Success >-- Performing Test COMPILER_SUPPORTS-Wshadow >-- Performing Test COMPILER_SUPPORTS-Wshadow - Success >-- Performing Test COMPILER_SUPPORTS-Wconversion >-- Performing Test COMPILER_SUPPORTS-Wconversion - Success >-- Performing Test COMPILER_SUPPORTS_march_native >-- Performing Test COMPILER_SUPPORTS_march_native - Success >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success >-- Found Threads: TRUE >CMake Warning (dev) at CMakeLists.txt:132 (_find_package): > Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake > --help-policy CMP0167" for policy details. Use the cmake_policy command to > set the policy and suppress this warning. > >Call Stack (most recent call first): > tools/CMakeLists.txt:55 (find_package) >This warning is for project developers. Use -Wno-dev to suppress it. > >-- Found Boost: /usr/lib64/cmake/Boost-1.85.0/BoostConfig.cmake (found suitable version "1.85.0", minimum required is "1.71.0") found components: program_options filesystem system >-- Found Python: /usr/bin/python3.13 (found suitable version "3.13.0", minimum required is "3") found components: Interpreter >-- Found OpenMP_CXX: -fopenmp (found suitable version "4.5", minimum required is "4.5") >-- Found OpenMP: TRUE (found suitable version "4.5", minimum required is "4.5") >-- Found Eigen3: /usr/share/eigen3/cmake >-- Found PkgConfig: /usr/bin/x86_64-pc-linux-gnu-pkg-config (found version "2.2.0") >-- Checking for module 'fftw3' >-- Found fftw3, version 3.3.10 >-- Found FFTW3: /usr/lib64/libfftw3.so >-- Looking for C++ include cassert >-- Looking for C++ include cassert - found >-- Looking for C++ include cmath >-- Looking for C++ include cmath - found >-- Looking for C++ include fstream >-- Looking for C++ include fstream - found >-- Looking for C++ include functional >-- Looking for C++ include functional - found >-- Looking for C++ include iostream >-- Looking for C++ include iostream - found >-- Looking for C++ include limits >-- Looking for C++ include limits - found >-- Looking for C++ include list >-- Looking for C++ include list - found >-- Looking for C++ include map >-- Looking for C++ include map - found >-- Looking for C++ include ostream >-- Looking for C++ include ostream - found >-- Looking for C++ include sstream >-- Looking for C++ include sstream - found >-- Looking for C++ include stack >-- Looking for C++ include stack - found >-- Looking for C++ include stdexcept >-- Looking for C++ include stdexcept - found >-- Looking for C++ include string >-- Looking for C++ include string - found >-- Looking for C++ include vector >-- Looking for C++ include vector - found >-- Found EXPAT: /usr/lib64/libexpat.so (found version "2.6.2") >-- Found Python: /usr/bin/python3.13 (found suitable version "3.13.0", minimum required is "3.5") found components: Interpreter >CMake Warning (dev) at CMakeLists.txt:132 (_find_package): > Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake > --help-policy CMP0167" for policy details. Use the cmake_policy command to > set the policy and suppress this warning. > >Call Stack (most recent call first): > csg/CMakeLists.txt:60 (find_package) >This warning is for project developers. Use -Wno-dev to suppress it. > >-- Found Boost: /usr/lib64/cmake/Boost-1.85.0/BoostConfig.cmake (found suitable version "1.85.0", minimum required is "1.71.0") found components: program_options filesystem system regex >-- Found Eigen3: /usr/share/eigen3/cmake >-- Found VOTCA_TOOLS: >CMake Warning at csg/CMakeLists.txt:83 (message): > Gromacs-2020 and above have no support for tabulated interactions, that are > needed for coarse-graining (see and comment on > https://gitlab.com/gromacs/gromacs/-/issues/1347) > > >-- Found GMX: /usr/bin/gmx >-- Looking for C++ include algorithm >-- Looking for C++ include algorithm - found >-- Looking for C++ include iomanip >-- Looking for C++ include iomanip - found >-- Looking for C++ include numeric >-- Looking for C++ include numeric - found >-- Looking for C++ include cstdlib >-- Looking for C++ include cstdlib - found >-- Found HDF5: /usr/lib64/libhdf5_cpp.so;/usr/lib64/libhdf5.so;/usr/lib64/libz.so;/usr/lib64/libdl.a;/usr/lib64/libm.so (found version "1.14.4-2") found components: CXX >-- Could NOT find LMP (missing: LMP_EXECUTABLE) >-- Found Python: /usr/bin/python3.13 (found suitable version "3.13.0", minimum required is "3") found components: Interpreter >-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) >-- Could NOT find SPHINX (missing: SPHINX_EXECUTABLE) >-- Could NOT find CLANG_FORMAT: Found unsuitable version "0.0", but required is at least "11" (found CLANG_FORMAT_EXECUTABLE-NOTFOUND) >-- The following features have been enabled: > > * INJECT_MARCH_NATIVE, Add -march=native to CXX flags > * BUILD_MANPAGES, Build manpages (disable for cross-compile) > * BUILD_CSGAPPS, Install extra app using csg > >-- The following RECOMMENDED packages have been found: > > * FFTW3 > Enables FFT functionality > * PkgConfig > Used to detect fftw package > * GROMACS (required version >= 2021) > Used to read/write gromacs data files > * HDF5 > Used to read h5md data files > >-- The following REQUIRED packages have been found: > > * EXPAT > Used for XML parsing > * boost_program_options (required version == 1.85.0) > * boost_atomic (required version == 1.85.0) > * boost_filesystem (required version == 1.85.0) > * boost_system (required version == 1.85.0) > * boost_headers (required version == 1.85.0) > * boost_regex (required version == 1.85.0) > * Boost (required version >= 1.71.0) > Extended C++ libraries > * Eigen3 (required version >= 3.3.0) > C++ vector data structures > * Threads > Used for thread parallelization > * OpenMP > Used for thread parallelization in tools > * Python (required version >= 3) > Used to build documentation files > Used for csg scripts > Used to build documentation files > >-- The following features have been disabled: > > * BUILD_XTP, Build xtp module > * ENABLE_TESTING, Enable unit tests > * ENABLE_RPATH_INJECT, Inject rpath into executables > * BUILD_OWN_GROMACS, Build an internal version of gromacs > * BUILD_OWN_LIBINT, Build an internal version of libint > * INSTALL_RC_FILES, Install votca rc files (VOTCARC.bash etc.) > * ENABLE_REGRESSION_TESTING, Enable regression tests > >-- The following OPTIONAL packages have not been found: > > * Doxygen > Needed to build API documentation > * CLANG_FORMAT (required version >= 11) > >-- <<< Gentoo configuration >>> >Build type RelWithDebInfo >Install path /usr >Compiler flags: >C >C++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native >Linker flags: >Executable -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 >Module -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 >Shared -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 > >-- Configuring done (7.4s) >-- Generating done (0.3s) >-- Build files have been written to: /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1 ... > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build" >ninja -v -j63 -l0 >[1/169] cd /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg && /usr/bin/cmake -DTOP_SOURCE_DIR="/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1" -DGIT_EXECUTABLE="" -P /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/CMakeModules/gitversion.cmake >[2/169] cd /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/src/libtools && /usr/bin/cmake -DTOP_SOURCE_DIR="/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1" -DGIT_EXECUTABLE="" -P /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/CMakeModules/gitversion.cmake >[3/169] cd /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/scripts && /usr/bin/cmake -DINPUT="votca_compare.tmp.out" -DOUTPUT="votca_compare" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1" -P /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/CMakeModules/gitscript.cmake >[4/169] cd /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/scripts && /usr/bin/cmake -DINPUT="votca_help2doc.tmp.out" -DOUTPUT="votca_help2doc" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1" -P /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/CMakeModules/gitscript.cmake >[5/169] cd /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/scripts && /usr/bin/cmake -DINPUT="csg_call.in2" -DOUTPUT="csg_call" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1" -P /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/CMakeModules/gitscript.cmake >[6/169] cd /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/scripts && /usr/bin/cmake -DINPUT="csg_inverse.in2" -DOUTPUT="csg_inverse" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1" -P /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/CMakeModules/gitscript.cmake >[7/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/src/libtools/colors.cc >[8/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/src/libtools/mutex.cc >[9/169] cd /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/scripts && /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/scripts/votca_compare --format groff --out votca_compare.man >/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/scripts/votca_help2doc:38: SyntaxWarning: invalid escape sequence '\-' > COPYRIGHT = """ >/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/scripts/votca_help2doc:243: SyntaxWarning: invalid escape sequence '\-' > """ >/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/scripts/votca_help2doc:243: SyntaxWarning: invalid escape sequence '\-' > """ >[10/169] cd /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/scripts && /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name 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-I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/potentialfunctions/potentialfunctionljg.cc >[24/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/boundarycondition.cc >[25/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc >FAILED: csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o >/usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc >/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:24:10: fatal error: boost/filesystem/convenience.hpp: No such file or directory > 24 | #include <boost/filesystem/convenience.hpp> > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >compilation terminated. >[26/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc >FAILED: csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o >/usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc >/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:23:10: fatal error: boost/filesystem/convenience.hpp: No such file or directory > 23 | #include <boost/filesystem/convenience.hpp> > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >compilation terminated. >[27/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/potentialfunctions/potentialfunction.cc >[28/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/graphvisitor.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/graphvisitor.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/graphvisitor.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/src/libtools/graphvisitor.cc >[29/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/src/libtools/tokenizer.cc >[30/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/graph_df_visitor.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/graph_df_visitor.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/graph_df_visitor.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/src/libtools/graph_df_visitor.cc >[31/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK 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/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/version.cc >[32/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/orthorhombicbox.cc >[33/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/graph_bf_visitor.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/graph_bf_visitor.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/graph_bf_visitor.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/src/libtools/graph_bf_visitor.cc >[34/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc >FAILED: csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o >/usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc >/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc:25:10: fatal error: boost/filesystem/convenience.hpp: No such file or directory > 25 | #include <boost/filesystem/convenience.hpp> > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >compilation terminated. >[35/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/src/libtools/correlate.cc >[36/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/src/libtools/histogram.cc >[37/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/src/libtools/datacollection.cc >[38/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/src/libtools/propertyiomanipulator.cc >[39/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/pdbreader.cc >FAILED: csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o >/usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/pdbreader.cc >/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/pdbreader.cc:25:10: fatal error: boost/filesystem/convenience.hpp: No such file or directory > 25 | #include <boost/filesystem/convenience.hpp> > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >compilation terminated. >[40/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK 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-I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/map.cc >[78/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB 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-I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/lammpsdumpwriter.cc >[81/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp 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-I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/src/libtools/linalg.cc >[85/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o -MF 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-I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/groreader.cc >[87/169] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1/csg/src/libcsg/modules/io/lammpsdatareader.cc >ninja: build stopped: subcommand failed. > * ERROR: sci-chemistry/votca-2022.1-r1::gentoo failed (compile phase): > * ninja -v -j63 -l0 failed > * > * Call stack: > * ebuild.sh, line 136: Called src_compile > * environment, line 3197: Called cmake_src_compile > * environment, line 1328: Called cmake_build > * environment, line 1295: Called eninja > * environment, line 1777: Called die > * The specific snippet of code: > * "$@" || die -n "${*} failed" > * > * If you need support, post the output of `emerge --info '=sci-chemistry/votca-2022.1-r1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-chemistry/votca-2022.1-r1::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-chemistry/votca-2022.1-r1:20240731-102938.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/votca-2022.1-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/votca-2022.1-r1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1_build' > * S: '/var/tmp/portage/sci-chemistry/votca-2022.1-r1/work/votca-2022.1' >
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