This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by mcl configure 14-137, which was generated by GNU Autoconf 2.72. Invocation command line was $ ./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/mcl-14.137 --htmldir=/usr/share/doc/mcl-14.137/html --libdir=/usr/lib --enable-blast ## --------- ## ## Platform. ## ## --------- ## hostname = localhost uname -m = i686 uname -r = 6.1.66-gentoo-dist uname -s = Linux uname -v = #1 SMP PREEMPT_DYNAMIC Wed Dec 13 16:48:18 CET 2023 /usr/bin/uname -p = AMD EPYC 7513 32-Core Processor /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/lib/portage/python3.12/ebuild-helpers/xattr/ PATH: /usr/lib/portage/python3.12/ebuild-helpers/ PATH: /usr/local/sbin/ PATH: /usr/local/bin/ PATH: /usr/sbin/ PATH: /usr/bin/ PATH: /sbin/ PATH: /bin/ PATH: /opt/bin/ ## ----------- ## ## Core tests. ## ## ----------- ## configure:2439: looking for aux files: config.guess config.sub ar-lib compile missing install-sh configure:2452: trying ./autofoo/ configure:2481: ./autofoo/config.guess found configure:2481: ./autofoo/config.sub found configure:2481: ./autofoo/ar-lib found configure:2481: ./autofoo/compile found configure:2481: ./autofoo/missing found configure:2463: ./autofoo/install-sh found configure:2618: checking for a BSD-compatible install configure:2692: result: /usr/lib/portage/python3.12/ebuild-helpers/xattr/install -c configure:2703: checking whether build environment is sane configure:2758: result: yes configure:2919: checking for a race-free mkdir -p configure:2962: result: /bin/mkdir -p configure:2969: checking for gawk configure:2990: found /usr/bin/gawk configure:3002: result: gawk configure:3013: checking whether make sets $(MAKE) configure:3037: result: yes configure:3067: checking whether make supports nested variables configure:3086: result: yes configure:3230: checking whether to enable maintainer-specific portions of Makefiles configure:3241: result: no configure:3272: checking whether make supports the include directive configure:3287: make -f confmf.GNU && cat confinc.out this is the am__doit target configure:3290: $? = 0 configure:3309: result: yes (GNU style) configure:3340: checking for i686-pc-linux-gnu-gcc configure:3361: found /usr/bin/i686-pc-linux-gnu-gcc configure:3373: result: i686-pc-linux-gnu-gcc configure:3778: checking for C compiler version configure:3787: i686-pc-linux-gnu-gcc --version >&5 i686-pc-linux-gnu-gcc (Gentoo 14.0.1_pre20240324 p25) 14.0.1 20240324 (experimental) Copyright (C) 2024 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3798: $? = 0 configure:3787: i686-pc-linux-gnu-gcc -v >&5 Using built-in specs. COLLECT_GCC=i686-pc-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-pc-linux-gnu/14/lto-wrapper Target: i686-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-14.0.1_pre20240324/work/gcc-14-20240324/configure --host=i686-pc-linux-gnu --build=i686-pc-linux-gnu --prefix=/usr --bindir=/usr/i686-pc-linux-gnu/gcc-bin/14 --includedir=/usr/lib/gcc/i686-pc-linux-gnu/14/include --datadir=/usr/share/gcc-data/i686-pc-linux-gnu/14 --mandir=/usr/share/gcc-data/i686-pc-linux-gnu/14/man --infodir=/usr/share/gcc-data/i686-pc-linux-gnu/14/info --with-gxx-include-dir=/usr/lib/gcc/i686-pc-linux-gnu/14/include/g++-v14 --disable-silent-rules --disable-dependency-tracking --with-python-dir=/share/gcc-data/i686-pc-linux-gnu/14/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --disable-libunwind-exceptions --enable-checking=yes,extra --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 14.0.1_pre20240324 p25' --with-gcc-major-version-only --enable-libstdcxx-time --enable-lto --disable-libstdcxx-pch --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --disable-multilib --disable-fixed-point --with-arch=i686 --enable-targets=all --enable-libgomp --disable-libssp --disable-libada --disable-systemtap --disable-valgrind-annotations --disable-vtable-verify --disable-libvtv --without-zstd --with-isl --disable-isl-version-check --enable-default-pie --enable-host-pie --disable-host-bind-now --enable-default-ssp --disable-fixincludes --with-build-config=bootstrap-lto Thread model: posix Supported LTO compression algorithms: zlib gcc version 14.0.1 20240324 (experimental) (Gentoo 14.0.1_pre20240324 p25) configure:3798: $? = 0 configure:3787: i686-pc-linux-gnu-gcc -V >&5 i686-pc-linux-gnu-gcc: error: unrecognized command-line option '-V' i686-pc-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:3798: $? = 1 configure:3787: i686-pc-linux-gnu-gcc -qversion >&5 i686-pc-linux-gnu-gcc: error: unrecognized command-line option '-qversion'; did you mean '--version'? i686-pc-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:3798: $? = 1 configure:3787: i686-pc-linux-gnu-gcc -version >&5 i686-pc-linux-gnu-gcc: error: unrecognized command-line option '-version' i686-pc-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:3798: $? = 1 configure:3818: checking whether the C compiler works configure:3840: i686-pc-linux-gnu-gcc -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c >&5 configure:3844: $? = 0 configure:3895: result: yes configure:3899: checking for C compiler default output file name configure:3901: result: a.out configure:3907: checking for suffix of executables configure:3914: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c >&5 configure:3918: $? = 0 configure:3942: result: configure:3966: checking whether we are cross compiling configure:3974: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c >&5 configure:3978: $? = 0 configure:3985: ./conftest configure:3989: $? = 0 configure:4004: result: no configure:4010: checking for suffix of object files configure:4033: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:4037: $? = 0 configure:4061: result: o configure:4065: checking whether the compiler supports GNU C configure:4085: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:4085: $? = 0 configure:4097: result: yes configure:4108: checking whether i686-pc-linux-gnu-gcc accepts -g configure:4129: i686-pc-linux-gnu-gcc -c -g conftest.c >&5 configure:4129: $? = 0 configure:4176: result: yes configure:4196: checking for i686-pc-linux-gnu-gcc option to enable C11 features configure:4211: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:4211: $? = 0 configure:4230: result: none needed configure:4354: checking whether i686-pc-linux-gnu-gcc understands -c and -o together configure:4377: i686-pc-linux-gnu-gcc -c conftest.c -o conftest2.o configure:4380: $? = 0 configure:4377: i686-pc-linux-gnu-gcc -c conftest.c -o conftest2.o configure:4380: $? = 0 configure:4393: result: yes configure:4412: checking dependency style of i686-pc-linux-gnu-gcc configure:4525: result: none configure:4541: checking _____ weak test for C void* <=> unsigned int conversion configure:4584: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c >&5 conftest.c: In function 'main': conftest.c:34:13: error: implicit declaration of function 'exit' [-Wimplicit-function-declaration] 34 | ; exit(1) | ^~~~ conftest.c:14:1: note: include '' or provide a declaration of 'exit' 13 | #include +++ |+#include 14 | conftest.c:34:13: warning: incompatible implicit declaration of built-in function 'exit' [-Wbuiltin-declaration-mismatch] 34 | ; exit(1) | ^~~~ conftest.c:34:13: note: include '' or provide a declaration of 'exit' configure:4584: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "mcl" | #define PACKAGE_TARNAME "mcl" | #define PACKAGE_VERSION "14-137" | #define PACKAGE_STRING "mcl 14-137" | #define PACKAGE_BUGREPORT "mcl-devel@lists.micans.org" | #define PACKAGE_URL "" | #define PACKAGE "mcl" | #define VERSION "14-137" | /* end confdefs.h. */ | | #include | #include | | unsigned test[] = | { 0x00000000, 0x000000ff, 0x0000ff00, 0x00ff0000, 0xff000000 | , 0x0000000f, 0x00000f00, 0x000f0000, 0x00f00000, 0x0f000000 | , 0x0000ffff, 0x00ffff00, 0xffff0000, 0x00ff00ff, 0xff00ff00 | , 0x00ffffff, 0x00ffffff, 0xffffff00, 0xffff00ff, 0xffffffff | , 0x80000000, 0x40000000, 0xc0000000, 0x80000001, 0x40000001 | } ; | | int main | ( int argc | , char* argv[] | ) | { int i = 0 | ; for (i=0;i&5 i686-pc-linux-gnu-gcc (Gentoo 14.0.1_pre20240324 p25) 14.0.1 20240324 (experimental) Copyright (C) 2024 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:5212: $? = 0 configure:5201: i686-pc-linux-gnu-gcc -v >&5 Using built-in specs. COLLECT_GCC=i686-pc-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-pc-linux-gnu/14/lto-wrapper Target: i686-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-14.0.1_pre20240324/work/gcc-14-20240324/configure --host=i686-pc-linux-gnu --build=i686-pc-linux-gnu --prefix=/usr --bindir=/usr/i686-pc-linux-gnu/gcc-bin/14 --includedir=/usr/lib/gcc/i686-pc-linux-gnu/14/include --datadir=/usr/share/gcc-data/i686-pc-linux-gnu/14 --mandir=/usr/share/gcc-data/i686-pc-linux-gnu/14/man --infodir=/usr/share/gcc-data/i686-pc-linux-gnu/14/info --with-gxx-include-dir=/usr/lib/gcc/i686-pc-linux-gnu/14/include/g++-v14 --disable-silent-rules --disable-dependency-tracking --with-python-dir=/share/gcc-data/i686-pc-linux-gnu/14/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --disable-libunwind-exceptions --enable-checking=yes,extra --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 14.0.1_pre20240324 p25' --with-gcc-major-version-only --enable-libstdcxx-time --enable-lto --disable-libstdcxx-pch --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --disable-multilib --disable-fixed-point --with-arch=i686 --enable-targets=all --enable-libgomp --disable-libssp --disable-libada --disable-systemtap --disable-valgrind-annotations --disable-vtable-verify --disable-libvtv --without-zstd --with-isl --disable-isl-version-check --enable-default-pie --enable-host-pie --disable-host-bind-now --enable-default-ssp --disable-fixincludes --with-build-config=bootstrap-lto Thread model: posix Supported LTO compression algorithms: zlib gcc version 14.0.1 20240324 (experimental) (Gentoo 14.0.1_pre20240324 p25) configure:5212: $? = 0 configure:5201: i686-pc-linux-gnu-gcc -V >&5 i686-pc-linux-gnu-gcc: error: unrecognized command-line option '-V' i686-pc-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:5212: $? = 1 configure:5201: i686-pc-linux-gnu-gcc -qversion >&5 i686-pc-linux-gnu-gcc: error: unrecognized command-line option '-qversion'; did you mean '--version'? i686-pc-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:5212: $? = 1 configure:5201: i686-pc-linux-gnu-gcc -version >&5 i686-pc-linux-gnu-gcc: error: unrecognized command-line option '-version' i686-pc-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:5212: $? = 1 configure:5216: checking whether the compiler supports GNU C configure:5248: result: yes configure:5259: checking whether i686-pc-linux-gnu-gcc accepts -g configure:5327: result: yes configure:5347: checking for i686-pc-linux-gnu-gcc option to enable C11 features configure:5381: result: none needed configure:5505: checking whether i686-pc-linux-gnu-gcc understands -c and -o together configure:5544: result: yes configure:5563: checking dependency style of i686-pc-linux-gnu-gcc configure:5676: result: none configure:5692: checking whether ln -s works configure:5696: result: yes configure:5706: checking for i686-pc-linux-gnu-ranlib configure:5727: found /usr/bin/i686-pc-linux-gnu-ranlib configure:5739: result: i686-pc-linux-gnu-ranlib configure:5813: checking for i686-pc-linux-gnu-ar configure:5834: found /usr/bin/i686-pc-linux-gnu-ar configure:5846: result: i686-pc-linux-gnu-ar configure:5922: checking the archiver (i686-pc-linux-gnu-ar) interface configure:5939: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:5939: $? = 0 configure:5942: i686-pc-linux-gnu-ar cru libconftest.a conftest.o >&5 configure:5945: $? = 0 configure:5974: result: ar configure:5997: checking for main in -lm configure:6017: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 configure:6017: $? = 0 configure:6029: result: yes configure:6045: checking for stdio.h configure:6045: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6045: $? = 0 configure:6045: result: yes configure:6045: checking for stdlib.h configure:6045: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6045: $? = 0 configure:6045: result: yes configure:6045: checking for string.h configure:6045: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6045: $? = 0 configure:6045: result: yes configure:6045: checking for inttypes.h configure:6045: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6045: $? = 0 configure:6045: result: yes configure:6045: checking for stdint.h configure:6045: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6045: $? = 0 configure:6045: result: yes configure:6045: checking for strings.h configure:6045: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6045: $? = 0 configure:6045: result: yes configure:6045: checking for sys/stat.h configure:6045: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6045: $? = 0 configure:6045: result: yes configure:6045: checking for sys/types.h configure:6045: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6045: $? = 0 configure:6045: result: yes configure:6045: checking for unistd.h configure:6045: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6045: $? = 0 configure:6045: result: yes configure:6070: checking for grep that handles long lines and -e configure:6136: result: /bin/grep configure:6144: checking for egrep configure:6214: result: /bin/grep -E configure:6222: checking for float.h configure:6222: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6222: $? = 0 configure:6222: result: yes configure:6228: checking for limits.h configure:6228: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6228: $? = 0 configure:6228: result: yes configure:6234: checking for malloc.h configure:6234: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6234: $? = 0 configure:6234: result: yes configure:6240: checking for stdlib.h configure:6240: result: yes configure:6246: checking for string.h configure:6246: result: yes configure:6252: checking for unistd.h configure:6252: result: yes configure:6261: checking for an ANSI C-conforming const configure:6328: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6328: $? = 0 configure:6338: result: yes configure:6346: checking for size_t configure:6346: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 configure:6346: $? = 0 configure:6346: i686-pc-linux-gnu-gcc -c -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 conftest.c >&5 conftest.c: In function 'main': conftest.c:60:21: error: expected expression before ')' token 60 | if (sizeof ((size_t))) | ^ configure:6346: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "mcl" | #define PACKAGE_TARNAME "mcl" | #define PACKAGE_VERSION "14-137" | #define PACKAGE_STRING "mcl 14-137" | #define PACKAGE_BUGREPORT "mcl-devel@lists.micans.org" | #define PACKAGE_URL "" | #define PACKAGE "mcl" | #define VERSION "14-137" | #define MCL_HELPFUL_REMINDER /**/ | #define HAVE_LIBM 1 | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_STDIO_H | # include | #endif | #ifdef HAVE_STDLIB_H | # include | #endif | #ifdef HAVE_STRING_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main (void) | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:6346: result: yes configure:6366: checking build system type configure:6382: result: i686-pc-linux-gnu configure:6402: checking host system type configure:6417: result: i686-pc-linux-gnu configure:6611: checking for the pthreads library -lpthreads configure:6644: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lpthreads -lm >&5 /usr/lib/gcc/i686-pc-linux-gnu/14/../../../../i686-pc-linux-gnu/bin/ld: cannot find -lpthreads: No such file or directory collect2: error: ld returned 1 exit status configure:6644: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "mcl" | #define PACKAGE_TARNAME "mcl" | #define PACKAGE_VERSION "14-137" | #define PACKAGE_STRING "mcl 14-137" | #define PACKAGE_BUGREPORT "mcl-devel@lists.micans.org" | #define PACKAGE_URL "" | #define PACKAGE "mcl" | #define VERSION "14-137" | #define MCL_HELPFUL_REMINDER /**/ | #define HAVE_LIBM 1 | #define HAVE_STDIO_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | int | main (void) | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:6654: result: no configure:6550: checking whether pthreads work without any flags configure:6644: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 configure:6644: $? = 0 configure:6654: result: yes configure:6674: checking for joinable pthread attribute configure:6687: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 configure:6687: $? = 0 configure:6723: result: PTHREAD_CREATE_JOINABLE configure:6730: checking if more special flags are required for pthreads configure:6737: result: no configure:6749: checking for cc_r configure:6783: result: i686-pc-linux-gnu-gcc configure:6820: checking for GNU libc compatible malloc configure:6852: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 configure:6852: $? = 0 configure:6852: ./conftest configure:6852: $? = 0 configure:6866: result: yes configure:6889: checking for working memcmp configure:6934: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 configure:6934: $? = 0 configure:6934: ./conftest configure:6934: $? = 0 configure:6948: result: yes configure:6961: checking for vprintf configure:6961: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 conftest.c:46:6: warning: conflicting types for built-in function 'vprintf'; expected 'int(const char *, char *)' [-Wbuiltin-declaration-mismatch] 46 | char vprintf (void); | ^~~~~~~ conftest.c:38:1: note: 'vprintf' is declared in header '' 37 | #include 38 | #undef vprintf configure:6961: $? = 0 configure:6961: result: yes configure:6982: checking for floor configure:6982: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 conftest.c:47:6: warning: conflicting types for built-in function 'floor'; expected 'double(double)' [-Wbuiltin-declaration-mismatch] 47 | char floor (void); | ^~~~~ conftest.c:39:1: note: 'floor' is declared in header '' 38 | #include 39 | #undef floor configure:6982: $? = 0 configure:6982: result: yes configure:6988: checking for memset configure:6988: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 conftest.c:48:6: warning: conflicting types for built-in function 'memset'; expected 'void *(void *, int, unsigned int)' [-Wbuiltin-declaration-mismatch] 48 | char memset (void); | ^~~~~~ conftest.c:40:1: note: 'memset' is declared in header '' 39 | #include 40 | #undef memset configure:6988: $? = 0 configure:6988: result: yes configure:6994: checking for pow configure:6994: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 conftest.c:49:6: warning: conflicting types for built-in function 'pow'; expected 'double(double, double)' [-Wbuiltin-declaration-mismatch] 49 | char pow (void); | ^~~ conftest.c:41:1: note: 'pow' is declared in header '' 40 | #include 41 | #undef pow configure:6994: $? = 0 configure:6994: result: yes configure:7000: checking for rint configure:7000: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 conftest.c:50:6: warning: conflicting types for built-in function 'rint'; expected 'double(double)' [-Wbuiltin-declaration-mismatch] 50 | char rint (void); | ^~~~ conftest.c:42:1: note: 'rint' is declared in header '' 41 | #include 42 | #undef rint configure:7000: $? = 0 configure:7000: result: yes configure:7006: checking for sqrt configure:7006: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 conftest.c:51:6: warning: conflicting types for built-in function 'sqrt'; expected 'double(double)' [-Wbuiltin-declaration-mismatch] 51 | char sqrt (void); | ^~~~ conftest.c:43:1: note: 'sqrt' is declared in header '' 42 | #include 43 | #undef sqrt configure:7006: $? = 0 configure:7006: result: yes configure:7012: checking for strchr configure:7012: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 conftest.c:52:6: warning: conflicting types for built-in function 'strchr'; expected 'char *(const char *, int)' [-Wbuiltin-declaration-mismatch] 52 | char strchr (void); | ^~~~~~ conftest.c:44:1: note: 'strchr' is declared in header '' 43 | #include 44 | #undef strchr configure:7012: $? = 0 configure:7012: result: yes configure:7018: checking for strpbrk configure:7018: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 conftest.c:53:6: warning: conflicting types for built-in function 'strpbrk'; expected 'char *(const char *, const char *)' [-Wbuiltin-declaration-mismatch] 53 | char strpbrk (void); | ^~~~~~~ conftest.c:45:1: note: 'strpbrk' is declared in header '' 44 | #include 45 | #undef strpbrk configure:7018: $? = 0 configure:7018: result: yes configure:7024: checking for strstr configure:7024: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 conftest.c:54:6: warning: conflicting types for built-in function 'strstr'; expected 'char *(const char *, const char *)' [-Wbuiltin-declaration-mismatch] 54 | char strstr (void); | ^~~~~~ conftest.c:46:1: note: 'strstr' is declared in header '' 45 | #include 46 | #undef strstr configure:7024: $? = 0 configure:7024: result: yes configure:7033: checking for va_copy() function configure:7084: i686-pc-linux-gnu-gcc -o conftest -O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 conftest.c -lm >&5 configure:7084: $? = 0 configure:7084: ./conftest configure:7084: $? = 0 configure:7490: result: yes configure:7602: checking that generated files are newer than configure configure:7608: result: done configure:7643: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by mcl config.status 14-137, which was generated by GNU Autoconf 2.72. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on localhost config.status:916: creating Makefile config.status:916: creating include/Makefile config.status:916: creating doc/Makefile config.status:916: creating testing/Makefile config.status:916: creating testing/stream/Makefile config.status:916: creating testing/blast/Makefile config.status:916: creating testing/setops/Makefile config.status:916: creating graphs/Makefile config.status:916: creating img/Makefile config.status:916: creating scripts/Makefile config.status:916: creating util/Makefile config.status:916: creating src/Makefile config.status:916: creating src/clew/Makefile config.status:916: creating src/mcl/Makefile config.status:916: creating src/gryphon/Makefile config.status:916: creating src/impala/Makefile config.status:916: creating src/shcl/Makefile config.status:916: creating src/shmcl/Makefile config.status:916: creating src/shmx/Makefile config.status:916: creating src/shmcxquery/Makefile config.status:916: creating src/shmcx/Makefile config.status:916: creating src/alien/Makefile config.status:916: creating src/alien/oxygen/Makefile config.status:916: creating src/alien/oxygen/doc/Makefile config.status:916: creating src/alien/oxygen/src/Makefile config.status:916: creating config.h config.status:1145: executing depfiles commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=i686-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_undeclared_builtin_options='none needed' ac_cv_c_void_uint=failed ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0' ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=i686-pc-linux-gnu ac_cv_env_host_alias_set=set ac_cv_env_host_alias_value=i686-pc-linux-gnu ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_floor=yes ac_cv_func_malloc_0_nonnull=yes ac_cv_func_memcmp_working=yes ac_cv_func_memset=yes ac_cv_func_pow=yes ac_cv_func_rint=yes ac_cv_func_sqrt=yes ac_cv_func_strchr=yes ac_cv_func_strpbrk=yes ac_cv_func_strstr=yes ac_cv_func_vprintf=yes ac_cv_header_float_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_limits_h=yes ac_cv_header_malloc_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdio_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=i686-pc-linux-gnu ac_cv_lib_m_main=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_EGREP_TRADITIONAL='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_install='/usr/lib/portage/python3.12/ebuild-helpers/xattr/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AR=i686-pc-linux-gnu-ar ac_cv_prog_AWK=gawk ac_cv_prog_CC=i686-pc-linux-gnu-gcc ac_cv_prog_PTHREAD_CC=i686-pc-linux-gnu-gcc ac_cv_prog_RANLIB=i686-pc-linux-gnu-ranlib ac_cv_prog_cc_c11= ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_make_make_set=yes ac_cv_type_size_t=yes ac_cv_va_copy=C99 am_cv_CC_dependencies_compiler_type=none am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes gl_cv_compiler_check_decl_option=-Werror=implicit-function-declaration gl_cv_func_getcwd_path_max=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} '\''/var/tmp/portage/sci-biology/mcl-14.137/work/mcl-14-137/autofoo/missing'\'' aclocal-1.16' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='#' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='i686-pc-linux-gnu-ar' AUTOCONF='${SHELL} '\''/var/tmp/portage/sci-biology/mcl-14.137/work/mcl-14-137/autofoo/missing'\'' autoconf' AUTOHEADER='${SHELL} '\''/var/tmp/portage/sci-biology/mcl-14.137/work/mcl-14-137/autofoo/missing'\'' autoheader' AUTOMAKE='${SHELL} '\''/var/tmp/portage/sci-biology/mcl-14.137/work/mcl-14-137/autofoo/missing'\'' automake-1.16' AWK='gawk' BUILD_BLAST_FALSE='#' BUILD_BLAST_TRUE='' CC='i686-pc-linux-gnu-gcc' CCDEPMODE='depmode=none' CFLAGS='-O2 -march=i686 -mfpmath=sse -msse2 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ' CPPFLAGS='' CSCOPE='cscope' CTAGS='ctags' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ETAGS='etags' EXEEXT='' GREP='/bin/grep' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LDFLAGS='-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' LIBOBJS='' LIBS=' -lm ' LN_S='ln -s' LTLIBOBJS='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} '\''/var/tmp/portage/sci-biology/mcl-14.137/work/mcl-14-137/autofoo/missing'\'' makeinfo' MKDIR_P='/bin/mkdir -p' OBJEXT='o' PACKAGE='mcl' PACKAGE_BUGREPORT='mcl-devel@lists.micans.org' PACKAGE_NAME='mcl' PACKAGE_STRING='mcl 14-137' PACKAGE_TARNAME='mcl' PACKAGE_URL='' PACKAGE_VERSION='14-137' PATH_SEPARATOR=':' PTHREAD_CC='i686-pc-linux-gnu-gcc' PTHREAD_CFLAGS='' PTHREAD_LIBS='' RANLIB='i686-pc-linux-gnu-ranlib' SET_MAKE='' SHELL='/bin/sh' STRIP='' VERSION='14-137' ac_ct_AR='' ac_ct_CC='' acx_pthread_config='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='#' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='i686-pc-linux-gnu' build_alias='i686-pc-linux-gnu' build_cpu='i686' build_os='linux-gnu' build_vendor='pc' datadir='/usr/share' datarootdir='${prefix}/share' docdir='/usr/share/doc/mcl-14.137' dvidir='${docdir}' exec_prefix='${prefix}' host='i686-pc-linux-gnu' host_alias='i686-pc-linux-gnu' host_cpu='i686' host_os='linux-gnu' host_vendor='pc' htmldir='/usr/share/doc/mcl-14.137/html' includedir='${prefix}/include' infodir='/usr/share/info' install_sh='${SHELL} /var/tmp/portage/sci-biology/mcl-14.137/work/mcl-14-137/autofoo/install-sh' libdir='/usr/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='/var/lib' mandir='/usr/share/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='${localstatedir}/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "mcl" #define PACKAGE_TARNAME "mcl" #define PACKAGE_VERSION "14-137" #define PACKAGE_STRING "mcl 14-137" #define PACKAGE_BUGREPORT "mcl-devel@lists.micans.org" #define PACKAGE_URL "" #define PACKAGE "mcl" #define VERSION "14-137" #define MCL_HELPFUL_REMINDER /**/ #define HAVE_LIBM 1 #define HAVE_STDIO_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_STRINGS_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_UNISTD_H 1 #define STDC_HEADERS 1 #define HAVE_FLOAT_H 1 #define HAVE_LIMITS_H 1 #define HAVE_MALLOC_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_UNISTD_H 1 #define HAVE_MALLOC 1 #define HAVE_VPRINTF 1 #define HAVE_FLOOR 1 #define HAVE_MEMSET 1 #define HAVE_POW 1 #define HAVE_RINT 1 #define HAVE_SQRT 1 #define HAVE_STRCHR 1 #define HAVE_STRPBRK 1 #define HAVE_STRSTR 1 #define HAVE_VA_COPY 1 #define __VA_COPY_USE __VA_COPY_USE_C99 configure: exit 0