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Gentoo's Bugzilla – Attachment 882436 Details for
Bug 922239
dev-python/rpy-3.5.14 fails tests: rpy2.rinterface_lib.embedded.RRuntimeError: X11 is not available
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build.log and emerge --info
file_922239.txt (text/plain), 366.97 KB, created by
matoro
on 2024-01-16 19:38:21 UTC
(
hide
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Description:
build.log and emerge --info
Filename:
MIME Type:
Creator:
matoro
Created:
2024-01-16 19:38:21 UTC
Size:
366.97 KB
patch
obsolete
>Portage 3.0.61 (python 3.11.7-final-0, default/linux/amd64/17.1, gcc-13, glibc-2.38-r9, 6.6.10-arch1-1 x86_64) >================================================================= >System uname: Linux-6.6.10-arch1-1-x86_64-AMD_Ryzen_7_4800H_with_Radeon_Graphics-with-glibc2.38 >KiB Mem: 32214772 total, 4218884 free >KiB Swap: 12582908 total, 12582140 free >Timestamp of repository gentoo: Tue, 16 Jan 2024 18:50:09 +0000 >sh bash 5.1_p16-r6 >ld GNU ld (Gentoo 2.41 p4) 2.41.0 >app-misc/pax-utils: 1.3.5::gentoo >app-shells/bash: 5.1_p16-r6::gentoo >dev-build/autoconf: 2.71-r6::gentoo >dev-build/automake: 1.16.5-r1::gentoo >dev-build/cmake: 3.27.9::gentoo >dev-build/libtool: 2.4.7-r1::gentoo >dev-build/make: 4.4.1-r1::gentoo >dev-build/meson: 1.3.0-r2::gentoo >dev-lang/perl: 5.38.2-r1::gentoo >dev-lang/python: 3.11.7::gentoo, 3.12.1_p1::gentoo >dev-lang/rust-bin: 1.74.1::gentoo >sys-apps/baselayout: 2.14-r1::gentoo >sys-apps/openrc: 0.48::gentoo >sys-apps/sandbox: 2.38::gentoo >sys-devel/binutils: 2.41-r3::gentoo >sys-devel/binutils-config: 5.5::gentoo >sys-devel/gcc: 13.2.1_p20230826::gentoo >sys-devel/gcc-config: 2.11::gentoo >sys-devel/llvm: 16.0.6::gentoo >sys-kernel/linux-headers: 6.1::gentoo (virtual/os-headers) >sys-libs/glibc: 2.38-r9::gentoo >Repositories: > >gentoo > location: /var/db/repos/gentoo > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > volatile: False > sync-rsync-verify-jobs: 1 > sync-rsync-verify-metamanifest: yes > sync-rsync-verify-max-age: 3 > sync-rsync-extra-opts: > >Binary Repositories: > >gentoobinhost > priority: 1 > sync-uri: https://gentoo.osuosl.org/releases/amd64/binpackages/17.1/x86-64 > >ACCEPT_KEYWORDS="amd64" >ACCEPT_LICENSE="@FREE" >CBUILD="x86_64-pc-linux-gnu" >CFLAGS="-O2 -pipe" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php8.1/ext-active/ /etc/php/cgi-php8.1/ext-active/ /etc/php/cli-php8.1/ext-active/ /etc/php/fpm-php8.1/ext-active/ /etc/php/phpdbg-php8.1/ext-active/ /etc/sandbox.d /etc/terminfo" >CXXFLAGS="-O2 -pipe" >DISTDIR="/var/cache/distfiles" >EMERGE_DEFAULT_OPTS="--autounmask --autounmask-continue --complete-graph --getbinpkg --usepkg-exclude dev-perl/Mozilla-CA" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" >FCFLAGS="-O2 -pipe" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance binpkg-request-signature buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe" >GENTOO_MIRRORS="http://distfiles.gentoo.org" >LANG="en_US.utf8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed" >LEX="flex" >MAKEOPTS="-j8" >PKGDIR="/var/cache/binpkgs" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >SHELL="/bin/bash" >USE="acl amd64 bzip2 cli crypt dri fortran gdbm iconv ipv6 libtirpc multilib ncurses nls openmp pam pcre readline seccomp split-usr ssl test-rust unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby31" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account" >Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS > > > > * Package: dev-python/rpy-3.5.14:0 > * Repository: gentoo > * Maintainer: sci@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python3_11 test > * FEATURES: keeptemp network-sandbox preserve-libs sandbox test userpriv usersandbox >>>> Unpacking source... >>>> Unpacking rpy2-3.5.14.tar.gz to /var/tmp/portage/dev-python/rpy-3.5.14/work >>>> Source unpacked in /var/tmp/portage/dev-python/rpy-3.5.14/work >>>> Preparing source in /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14 ... > * Build system packages: > * dev-python/gpep517 : 15 > * dev-python/installer : 0.7.0 > * dev-python/cython : 3.0.6 > * dev-python/setuptools : 69.0.3 > * dev-python/setuptools-rust : 1.8.1 > * dev-python/setuptools-scm : 8.0.4 > * dev-python/wheel : 0.42.0 >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14 ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14 ... > * python3_11: running distutils-r1_run_phase distutils-r1_python_compile > * Building the wheel for rpy2-3.5.14 via setuptools.build_meta >python3.11 -m gpep517 build-wheel --prefix=/usr --backend setuptools.build_meta --output-fd 3 --wheel-dir /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/wheel >2024-01-16 19:22:06,346 gpep517 INFO Building wheel via backend setuptools.build_meta >2024-01-16 19:22:06,356 situation INFO R home found: /usr/lib64/R >2024-01-16 19:22:06,356 situation INFO cffi mode is CFFI_MODE.ANY >2024-01-16 19:22:06,356 situation INFO R exec path: /usr/lib64/R/bin/R >2024-01-16 19:22:06,391 situation INFO R exec path: /usr/lib64/R/bin/R >2024-01-16 19:22:06,424 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/var >2024-01-16 19:22:06,424 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/var/tmp >2024-01-16 19:22:06,424 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/var/tmp/portage >2024-01-16 19:22:06,424 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/var/tmp/portage/dev-python >2024-01-16 19:22:06,424 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/var/tmp/portage/dev-python/rpy-3.5.14 >2024-01-16 19:22:06,424 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/var/tmp/portage/dev-python/rpy-3.5.14/temp >2024-01-16 19:22:06,424 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql >2024-01-16 19:22:06,425 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -DNDEBUG -fPIC -I/usr/lib64/R/include -c /var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/test_pw_r.c -o /var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/test_pw_r.o >2024-01-16 19:22:06,444 root INFO x86_64-pc-linux-gnu-gcc /var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/test_pw_r.o -L/usr/lib64/R/lib -lR -ltre -lpcre2-8 -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -o /var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp_pw_r_xkfz5xql/test_pw_r >2024-01-16 19:22:06,568 situation INFO cffi mode is CFFI_MODE.ANY >2024-01-16 19:22:06,626 situation INFO R home found: /usr/lib64/R >2024-01-16 19:22:06,626 situation INFO R exec path: /usr/lib64/R/bin/R >2024-01-16 19:22:06,659 situation INFO R exec path: /usr/lib64/R/bin/R >2024-01-16 19:22:06,697 situation INFO R exec path: /usr/lib64/R/bin/R >2024-01-16 19:22:06,729 situation INFO R exec path: /usr/lib64/R/bin/R >2024-01-16 19:22:06,824 situation INFO cffi mode is CFFI_MODE.ANY >2024-01-16 19:22:06,860 situation INFO R home found: /usr/lib64/R >2024-01-16 19:22:06,861 situation INFO R exec path: /usr/lib64/R/bin/R >2024-01-16 19:22:06,895 situation INFO R exec path: /usr/lib64/R/bin/R >2024-01-16 19:22:06,931 situation INFO R exec path: /usr/lib64/R/bin/R >2024-01-16 19:22:06,963 situation INFO R exec path: /usr/lib64/R/bin/R >WARNING setuptools_scm._integration.setuptools pyproject.toml does not contain a tool.setuptools_scm section >2024-01-16 19:22:07,157 root INFO running bdist_wheel >2024-01-16 19:22:07,183 root INFO running build >2024-01-16 19:22:07,183 root INFO running build_py >2024-01-16 19:22:07,183 root WARNING file _rinterface_cffi_abi.py (for module _rinterface_cffi_abi) not found >2024-01-16 19:22:07,184 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build >2024-01-16 19:22:07,184 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311 >2024-01-16 19:22:07,184 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2 >2024-01-16 19:22:07,184 root INFO copying rpy2/rinterface.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2 >2024-01-16 19:22:07,184 root INFO copying rpy2/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2 >2024-01-16 19:22:07,184 root INFO copying rpy2/_rinterface_cffi_build.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2 >2024-01-16 19:22:07,184 root INFO copying rpy2/situation.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2 >2024-01-16 19:22:07,185 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rlike >2024-01-16 19:22:07,185 root INFO copying rpy2/rlike/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rlike >2024-01-16 19:22:07,185 root INFO copying rpy2/rlike/indexing.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rlike >2024-01-16 19:22:07,185 root INFO copying rpy2/rlike/functional.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rlike >2024-01-16 19:22:07,185 root INFO copying rpy2/rlike/container.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rlike >2024-01-16 19:22:07,186 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,186 root INFO copying rpy2/rinterface_lib/embedded.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,186 root INFO copying rpy2/rinterface_lib/bufferprotocol.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,186 root INFO copying rpy2/rinterface_lib/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,186 root INFO copying rpy2/rinterface_lib/callbacks.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,186 root INFO copying rpy2/rinterface_lib/embedded_mswin.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,187 root INFO copying rpy2/rinterface_lib/_rinterface_capi.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,187 root INFO copying rpy2/rinterface_lib/sexp.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,187 root INFO copying rpy2/rinterface_lib/memorymanagement.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,187 root INFO copying rpy2/rinterface_lib/na_values.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,187 root INFO copying rpy2/rinterface_lib/ffi_proxy.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,188 root INFO copying rpy2/rinterface_lib/conversion.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,188 root INFO copying rpy2/rinterface_lib/openrlib.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,188 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,188 root INFO copying rpy2/robjects/environments.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,188 root INFO copying rpy2/robjects/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,189 root INFO copying rpy2/robjects/methods.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,189 root INFO copying rpy2/robjects/pandas2ri.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,189 root INFO copying rpy2/robjects/language.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,189 root INFO copying rpy2/robjects/packages_utils.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,189 root INFO copying rpy2/robjects/functions.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,189 root INFO copying rpy2/robjects/packages.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,190 root INFO copying rpy2/robjects/conversion.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,190 root INFO copying rpy2/robjects/robject.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,190 root INFO copying rpy2/robjects/vectors.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,190 root INFO copying rpy2/robjects/numpy2ri.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,190 root INFO copying rpy2/robjects/constants.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,191 root INFO copying rpy2/robjects/help.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects >2024-01-16 19:22:07,191 root INFO creating 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rpy2/tests/robjects/test_vector.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects >2024-01-16 19:22:07,204 root INFO copying rpy2/tests/robjects/test_function.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects >2024-01-16 19:22:07,204 root INFO copying rpy2/tests/robjects/test_pandas_conversions.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects >2024-01-16 19:22:07,205 root INFO copying rpy2/tests/robjects/test_environment.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects >2024-01-16 19:22:07,205 root INFO copying rpy2/tests/robjects/test_vector_datetime.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects >2024-01-16 19:22:07,205 root INFO copying rpy2/tests/robjects/test_vector_factor.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects >2024-01-16 19:22:07,205 root INFO copying rpy2/tests/robjects/test_translated_function.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects >2024-01-16 19:22:07,205 root INFO copying rpy2/tests/robjects/test_packages.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects >2024-01-16 19:22:07,205 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/ipython >2024-01-16 19:22:07,206 root INFO copying rpy2/tests/ipython/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/ipython >2024-01-16 19:22:07,206 root INFO copying rpy2/tests/ipython/test_rmagic.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/ipython >2024-01-16 19:22:07,206 root INFO copying rpy2/tests/ipython/test_html.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/ipython >2024-01-16 19:22:07,206 root INFO copying rpy2/tests/ipython/test_ggplot.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/ipython >2024-01-16 19:22:07,206 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib >2024-01-16 19:22:07,206 root INFO copying rpy2/tests/robjects/lib/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib >2024-01-16 19:22:07,207 root INFO copying rpy2/tests/robjects/lib/test_ggplot2.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib >2024-01-16 19:22:07,207 root INFO copying rpy2/tests/robjects/lib/test_dbplyr.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib >2024-01-16 19:22:07,207 root INFO copying rpy2/tests/robjects/lib/test_grdevices.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib >2024-01-16 19:22:07,207 root INFO copying rpy2/tests/robjects/lib/test_dplyr.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib >2024-01-16 19:22:07,208 root INFO copying rpy2/tests/robjects/lib/test_grid.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib >2024-01-16 19:22:07,208 root INFO copying rpy2/tests/robjects/lib/test_tidyr.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib >2024-01-16 19:22:07,208 root INFO running egg_info >2024-01-16 19:22:07,216 root INFO writing rpy2.egg-info/PKG-INFO >2024-01-16 19:22:07,218 root INFO writing dependency_links to rpy2.egg-info/dependency_links.txt >2024-01-16 19:22:07,219 root INFO writing requirements to rpy2.egg-info/requires.txt >2024-01-16 19:22:07,219 root INFO writing top-level names to rpy2.egg-info/top_level.txt >ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any >2024-01-16 19:22:07,259 root INFO reading manifest file 'rpy2.egg-info/SOURCES.txt' >2024-01-16 19:22:07,260 root INFO reading manifest template 'MANIFEST.in' >2024-01-16 19:22:07,262 root WARNING warning: no files found matching 'README' anywhere in distribution >2024-01-16 19:22:07,263 root WARNING warning: no previously-included files matching '*patch*' found anywhere in distribution >2024-01-16 19:22:07,263 root WARNING warning: no previously-included files matching '*diff*' found anywhere in distribution >2024-01-16 19:22:07,263 root WARNING warning: no previously-included files matching '.hg' found anywhere in distribution >2024-01-16 19:22:07,263 root WARNING warning: no files found matching 'MANIFEST' >2024-01-16 19:22:07,263 root WARNING warning: no files found matching '_rinterface_cffi_build' >2024-01-16 19:22:07,263 root WARNING warning: no files found matching 'rpy/__init__.py' >2024-01-16 19:22:07,263 root WARNING warning: no files found matching 'rpy/situation.py' >2024-01-16 19:22:07,263 root WARNING warning: no files found matching '*.py' under directory 'rpy/robjects' >2024-01-16 19:22:07,264 root WARNING warning: no files found matching '*.py' under directory 'rpy/ipython' >2024-01-16 19:22:07,264 root WARNING warning: no files found matching '*.py' under directory 'rpy/interactive' >2024-01-16 19:22:07,264 root WARNING warning: no files found matching '*.py' under directory 'rpy/rlike' >2024-01-16 19:22:07,264 root WARNING no previously-included directories found matching 'dist' >2024-01-16 19:22:07,264 root WARNING warning: no files found matching 'doc/source/rpy2_logo.png' >2024-01-16 19:22:07,264 root INFO adding license file 'LICENSE' >2024-01-16 19:22:07,264 root INFO adding license file 'AUTHORS' >2024-01-16 19:22:07,266 root INFO writing manifest file 'rpy2.egg-info/SOURCES.txt' >2024-01-16 19:22:07,267 root INFO copying rpy2/rinterface_lib/R_API.h -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,268 root INFO copying rpy2/rinterface_lib/R_API_eventloop.h -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,268 root INFO copying rpy2/rinterface_lib/R_API_eventloop.c -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,268 root INFO copying rpy2/rinterface_lib/RPY2.h -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,268 root INFO copying rpy2/rinterface_lib/_bufferprotocol.c -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,269 root WARNING file _rinterface_cffi_abi.py (for module _rinterface_cffi_abi) not found >2024-01-16 19:22:07,270 root WARNING warning: build_py_make_mod: byte-compiling is disabled, skipping. > >2024-01-16 19:22:07,270 root INFO generating cffi module '/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/_rinterface_cffi_abi.py' >2024-01-16 19:22:07,278 root INFO running build_ext >2024-01-16 19:22:07,278 root INFO generating cffi module '/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/_rinterface_cffi_api.c' >2024-01-16 19:22:07,278 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311 >cffi mode: CFFI_MODE.ANY >2024-01-16 19:22:07,403 root INFO building 'rpy2.rinterface_lib._bufferprotocol' extension >2024-01-16 19:22:07,403 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/rpy2 >2024-01-16 19:22:07,403 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/rpy2/rinterface_lib >2024-01-16 19:22:07,403 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -DNDEBUG -fPIC -I/usr/include/python3.11 -c rpy2/rinterface_lib/_bufferprotocol.c -o /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/rpy2/rinterface_lib/_bufferprotocol.o >2024-01-16 19:22:07,404 root INFO building '_rinterface_cffi_api' extension >2024-01-16 19:22:07,406 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/var >2024-01-16 19:22:07,406 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/var/tmp >2024-01-16 19:22:07,406 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/var/tmp/portage >2024-01-16 19:22:07,407 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/var/tmp/portage/dev-python >2024-01-16 19:22:07,407 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/var/tmp/portage/dev-python/rpy-3.5.14 >2024-01-16 19:22:07,407 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/var/tmp/portage/dev-python/rpy-3.5.14/work >2024-01-16 19:22:07,407 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11 >2024-01-16 19:22:07,407 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build >2024-01-16 19:22:07,407 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311 >2024-01-16 19:22:07,408 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -DNDEBUG -fPIC -DRPY2_RLEN_LONG=True -DR_INTERFACE_PTRS=True -Irpy2/rinterface_lib/ -I/usr/include/python3.11 -c /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/_rinterface_cffi_api.c -o /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/_rinterface_cffi_api.o -std=c99 >2024-01-16 19:22:07,489 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -DNDEBUG /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/rpy2/rinterface_lib/_bufferprotocol.o -L/usr/lib64 -o /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib/_bufferprotocol.cpython-311-x86_64-linux-gnu.so >2024-01-16 19:22:08,498 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -DNDEBUG /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/temp.linux-x86_64-cpython-311/_rinterface_cffi_api.o -L/usr/lib64/R/lib -L/usr/lib64 -lR -ltre -lpcre2-8 -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -lblas -o /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/_rinterface_cffi_api.abi3.so -Wl,--export-dynamic -fopenmp -Wl,-O1 -Wl,--as-needed -Wl,-rpath,/usr/lib64/R/lib64 >2024-01-16 19:22:08,543 wheel INFO installing to /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel >2024-01-16 19:22:08,543 root INFO running install >2024-01-16 19:22:08,552 root INFO running install_lib >2024-01-16 19:22:08,561 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64 >2024-01-16 19:22:08,561 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel >2024-01-16 19:22:08,561 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/_rinterface_cffi_api.abi3.so -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel >2024-01-16 19:22:08,561 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/_rinterface_cffi_abi.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel >2024-01-16 19:22:08,561 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2 >2024-01-16 19:22:08,561 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2 >2024-01-16 19:22:08,562 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2 >2024-01-16 19:22:08,562 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests >2024-01-16 19:22:08,562 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/utils.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests >2024-01-16 19:22:08,562 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests >2024-01-16 19:22:08,562 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,562 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_vector_extractdelegator.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,563 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,563 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_help.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,563 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects/lib >2024-01-16 19:22:08,563 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects/lib >2024-01-16 19:22:08,563 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib/test_ggplot2.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects/lib >2024-01-16 19:22:08,564 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib/test_dbplyr.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects/lib >2024-01-16 19:22:08,564 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib/test_grdevices.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects/lib >2024-01-16 19:22:08,564 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib/test_dplyr.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects/lib >2024-01-16 19:22:08,564 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib/test_grid.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects/lib >2024-01-16 19:22:08,564 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/lib/test_tidyr.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects/lib >2024-01-16 19:22:08,565 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_robjects.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,565 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_methods.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,565 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_array.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,565 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_rs4.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,566 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_conversion.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,566 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_serialization.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,566 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_conversion_numpy.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,566 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_language.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,567 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_dataframe.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,567 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_packages_utils.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,567 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_formula.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,567 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_vector.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,567 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_function.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,568 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_pandas_conversions.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,568 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_environment.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,568 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_vector_datetime.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,568 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_vector_factor.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,568 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_translated_function.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,568 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/robjects/test_packages.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/robjects >2024-01-16 19:22:08,569 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rlike >2024-01-16 19:22:08,569 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rlike/test_functional.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rlike >2024-01-16 19:22:08,569 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rlike/test_indexing.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rlike >2024-01-16 19:22:08,569 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rlike/test_container.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rlike >2024-01-16 19:22:08,569 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,569 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_vector_int.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,570 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,570 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_vector_byte.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,570 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_threading.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,570 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_bufferprotocol.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,570 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_vector_str.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,571 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_symbol.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,571 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_endr.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,571 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_vector_lang.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,571 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_openrlib.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,571 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_vector_complex.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,572 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_memorymanagement.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,572 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_conversion.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,572 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_vector_pairlist.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,572 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_vectors.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,572 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_na.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,572 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_vector_float.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,573 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_environment.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,573 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_functions.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,573 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_vector_numpy.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,573 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_sexp.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,573 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_embedded_r.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,574 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_callbacks.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,574 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_externalptr.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,574 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_noinitialization.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,574 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_vector_bool.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,574 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/rinterface/test_vector_list.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface >2024-01-16 19:22:08,575 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/ipython >2024-01-16 19:22:08,575 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/ipython/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/ipython >2024-01-16 19:22:08,575 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/ipython/test_rmagic.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/ipython >2024-01-16 19:22:08,575 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/ipython/test_html.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/ipython >2024-01-16 19:22:08,576 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/tests/ipython/test_ggplot.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/tests/ipython >2024-01-16 19:22:08,576 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/interactive >2024-01-16 19:22:08,576 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/interactive/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/interactive >2024-01-16 19:22:08,576 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/interactive/process_revents.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/interactive >2024-01-16 19:22:08,576 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/interactive/packages.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/interactive >2024-01-16 19:22:08,577 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects >2024-01-16 19:22:08,577 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects/environments.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects >2024-01-16 19:22:08,577 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects >2024-01-16 19:22:08,577 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects/methods.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects >2024-01-16 19:22:08,577 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects/pandas2ri.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects >2024-01-16 19:22:08,577 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects/lib >2024-01-16 19:22:08,578 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects/lib/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects/lib >2024-01-16 19:22:08,578 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects/lib/grid.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects/lib >2024-01-16 19:22:08,578 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects/lib/dbplyr.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects/lib >2024-01-16 19:22:08,578 root INFO copying 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/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects >2024-01-16 19:22:08,580 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects/vectors.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects >2024-01-16 19:22:08,580 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects/numpy2ri.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects >2024-01-16 19:22:08,581 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects/constants.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects >2024-01-16 19:22:08,581 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/robjects/help.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/robjects >2024-01-16 19:22:08,581 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/_rinterface_cffi_build.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2 >2024-01-16 19:22:08,581 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/rlike >2024-01-16 19:22:08,581 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rlike/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/rlike >2024-01-16 19:22:08,581 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rlike/indexing.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/rlike >2024-01-16 19:22:08,582 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rlike/functional.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/rlike >2024-01-16 19:22:08,582 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rlike/container.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/rlike >2024-01-16 19:22:08,582 root INFO creating /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/rinterface_lib >2024-01-16 19:22:08,582 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib/embedded.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/rinterface_lib >2024-01-16 19:22:08,582 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib/bufferprotocol.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/rinterface_lib >2024-01-16 19:22:08,582 root INFO copying /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/lib.linux-x86_64-cpython-311/rpy2/rinterface_lib/__init__.py -> /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel/rpy2/rinterface_lib >2024-01-16 19:22:08,583 root INFO copying 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adding 'rpy2/tests/robjects/test_dataframe.py' >2024-01-16 19:22:08,624 wheel INFO adding 'rpy2/tests/robjects/test_environment.py' >2024-01-16 19:22:08,624 wheel INFO adding 'rpy2/tests/robjects/test_formula.py' >2024-01-16 19:22:08,625 wheel INFO adding 'rpy2/tests/robjects/test_function.py' >2024-01-16 19:22:08,625 wheel INFO adding 'rpy2/tests/robjects/test_help.py' >2024-01-16 19:22:08,625 wheel INFO adding 'rpy2/tests/robjects/test_language.py' >2024-01-16 19:22:08,625 wheel INFO adding 'rpy2/tests/robjects/test_methods.py' >2024-01-16 19:22:08,625 wheel INFO adding 'rpy2/tests/robjects/test_packages.py' >2024-01-16 19:22:08,625 wheel INFO adding 'rpy2/tests/robjects/test_packages_utils.py' >2024-01-16 19:22:08,625 wheel INFO adding 'rpy2/tests/robjects/test_pandas_conversions.py' >2024-01-16 19:22:08,625 wheel INFO adding 'rpy2/tests/robjects/test_robjects.py' >2024-01-16 19:22:08,625 wheel INFO adding 'rpy2/tests/robjects/test_rs4.py' >2024-01-16 19:22:08,626 wheel INFO adding 'rpy2/tests/robjects/test_serialization.py' >2024-01-16 19:22:08,626 wheel INFO adding 'rpy2/tests/robjects/test_translated_function.py' >2024-01-16 19:22:08,626 wheel INFO adding 'rpy2/tests/robjects/test_vector.py' >2024-01-16 19:22:08,626 wheel INFO adding 'rpy2/tests/robjects/test_vector_datetime.py' >2024-01-16 19:22:08,626 wheel INFO adding 'rpy2/tests/robjects/test_vector_extractdelegator.py' >2024-01-16 19:22:08,626 wheel INFO adding 'rpy2/tests/robjects/test_vector_factor.py' >2024-01-16 19:22:08,626 wheel INFO adding 'rpy2/tests/robjects/lib/__init__.py' >2024-01-16 19:22:08,627 wheel INFO adding 'rpy2/tests/robjects/lib/test_dbplyr.py' >2024-01-16 19:22:08,627 wheel INFO adding 'rpy2/tests/robjects/lib/test_dplyr.py' >2024-01-16 19:22:08,627 wheel INFO adding 'rpy2/tests/robjects/lib/test_ggplot2.py' >2024-01-16 19:22:08,627 wheel INFO adding 'rpy2/tests/robjects/lib/test_grdevices.py' >2024-01-16 19:22:08,627 wheel INFO adding 'rpy2/tests/robjects/lib/test_grid.py' >2024-01-16 19:22:08,627 wheel INFO adding 'rpy2/tests/robjects/lib/test_tidyr.py' >2024-01-16 19:22:08,627 wheel INFO adding 'rpy2-3.5.14.dist-info/AUTHORS' >2024-01-16 19:22:08,628 wheel INFO adding 'rpy2-3.5.14.dist-info/LICENSE' >2024-01-16 19:22:08,628 wheel INFO adding 'rpy2-3.5.14.dist-info/METADATA' >2024-01-16 19:22:08,628 wheel INFO adding 'rpy2-3.5.14.dist-info/WHEEL' >2024-01-16 19:22:08,628 wheel INFO adding 'rpy2-3.5.14.dist-info/top_level.txt' >2024-01-16 19:22:08,628 wheel INFO adding 'rpy2-3.5.14.dist-info/RECORD' >2024-01-16 19:22:08,629 wheel INFO removing /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/build/bdist.linux-x86_64/wheel >2024-01-16 19:22:08,632 gpep517 INFO The backend produced /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/wheel/rpy2-3.5.14-cp311-cp311-linux_x86_64.whl >--- >CFFI_MODE.ANY >ABI mode interface built. >API mode interface built. >To change the API/ABI build mode, set or modify the environment variable RPY2_CFFI_MODE. > * Installing rpy2-3.5.14-cp311-cp311-linux_x86_64.whl to /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/install >python3.11 -m gpep517 install-wheel --destdir=/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/install --interpreter=/usr/bin/python3.11 --prefix=/usr --optimize=all /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/wheel/rpy2-3.5.14-cp311-cp311-linux_x86_64.whl >2024-01-16 19:22:08,771 gpep517 INFO Installing /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/wheel/rpy2-3.5.14-cp311-cp311-linux_x86_64.whl into /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/install >2024-01-16 19:22:09,212 gpep517 INFO Installation complete >>>> Source compiled. >>>> Test phase: dev-python/rpy-3.5.14 > * python3_11: running distutils-r1_run_phase python_test > * The directory rpy2 occludes package installed for python3.11. > * The installed package includes additional files: > * > * rpy2/rinterface_lib/_bufferprotocol.cpython-311-x86_64-linux-gnu.so > * > * For more information on occluded packages, please see: > * https://projects.gentoo.org/python/guide/test.html#importerrors-for-c-extensions >python3.11 -m pytest -vv -ra -l -Wdefault --color=yes -o console_output_style=count -o tmp_path_retention_count=0 -o tmp_path_retention_policy=failed -p no:cov -p no:flake8 -p no:flakes -p no:pylint -p no:markdown -p no:sugar -p no:xvfb -p no:pytest-describe -p no:plus -p no:tavern -p no:salt-factories >===================================================================================== test session starts ====================================================================================== >platform linux -- Python 3.11.7, pytest-7.4.3, pluggy-1.3.0 -- /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14-python3_11/install/usr/bin/python3.11 >cachedir: .pytest_cache >rootdir: /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14 >configfile: pyproject.toml >testpaths: rpy2/tests >plugins: anyio-4.2.0 >collecting ... collected 860 items > >rpy2/tests/ipython/test_ggplot.py::test_image_png SKIPPED (The R package "rlang" is not installed.) 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[ 31/860] >rpy2/tests/rinterface/test_bufferprotocol.py::test_getrank PASSED [ 32/860] >rpy2/tests/rinterface/test_bufferprotocol.py::test_getshape PASSED [ 33/860] >rpy2/tests/rinterface/test_bufferprotocol.py::test_getstrides PASSED [ 34/860] >rpy2/tests/rinterface/test_callbacks.py::test_consolewrite_print PASSED [ 35/860] >rpy2/tests/rinterface/test_callbacks.py::test_set_consolewrite_print PASSED [ 36/860] >rpy2/tests/rinterface/test_callbacks.py::test_consolewrite_print_error PASSED [ 37/860] >rpy2/tests/rinterface/test_callbacks.py::testSetResetConsole PASSED [ 38/860] >rpy2/tests/rinterface/test_callbacks.py::test_resetconsole_error PASSED [ 39/860] >rpy2/tests/rinterface/test_callbacks.py::test_flushconsole PASSED [ 40/860] >rpy2/tests/rinterface/test_callbacks.py::test_flushconsole_with_error PASSED [ 41/860] >rpy2/tests/rinterface/test_callbacks.py::test_consoleread PASSED [ 42/860] >rpy2/tests/rinterface/test_callbacks.py::test_consoleread_empty PASSED [ 43/860] >rpy2/tests/rinterface/test_callbacks.py::test_console_read_with_error PASSED [ 44/860] >rpy2/tests/rinterface/test_callbacks.py::test_showmessage_default PASSED [ 45/860] >rpy2/tests/rinterface/test_callbacks.py::test_show_message PASSED [ 46/860] >rpy2/tests/rinterface/test_callbacks.py::test_show_message_with_error PASSED [ 47/860] >rpy2/tests/rinterface/test_callbacks.py::test_choosefile_default PASSED [ 48/860] >rpy2/tests/rinterface/test_callbacks.py::test_choosefile PASSED [ 49/860] >rpy2/tests/rinterface/test_callbacks.py::test_choosefile_error PASSED [ 50/860] >rpy2/tests/rinterface/test_callbacks.py::test_showfiles_default PASSED [ 51/860] >rpy2/tests/rinterface/test_callbacks.py::test_showfiles PASSED [ 52/860] >rpy2/tests/rinterface/test_callbacks.py::test_showfiles_error PASSED [ 53/860] >rpy2/tests/rinterface/test_callbacks.py::test_cleanup SKIPPED (WIP (should be run from worker process).) 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>rpy2/tests/rinterface/test_functions.py::test_scalar_convert_double PASSED [152/860] >rpy2/tests/rinterface/test_functions.py::test_scalar_convert_boolean PASSED [153/860] >rpy2/tests/rinterface/test_functions.py::test_call_in_context[True-True] PASSED [154/860] >rpy2/tests/rinterface/test_functions.py::test_call_in_context[True-False] PASSED [155/860] >rpy2/tests/rinterface/test_functions.py::test_call_in_context[False-True] PASSED [156/860] >rpy2/tests/rinterface/test_functions.py::test_call_in_context[False-False] PASSED [157/860] >rpy2/tests/rinterface/test_functions.py::test_call_in_context_nested[True] PASSED [158/860] >rpy2/tests/rinterface/test_functions.py::test_call_in_context_nested[False] PASSED [159/860] >rpy2/tests/rinterface/test_memorymanagement.py::test_rmemory_manager PASSED [160/860] >rpy2/tests/rinterface/test_memorymanagement.py::test_rmemory_manager_unprotect PASSED [161/860] >rpy2/tests/rinterface/test_memorymanagement.py::test_rmemory_manager_unprotect_invalid PASSED [162/860] >rpy2/tests/rinterface/test_na.py::test_r_to_NAInteger PASSED [163/860] >rpy2/tests/rinterface/test_na.py::test_NAInteger_repr PASSED [164/860] >rpy2/tests/rinterface/test_na.py::test_NAInteger_str PASSED [165/860] >rpy2/tests/rinterface/test_na.py::test_NAInteger_to_r PASSED [166/860] >rpy2/tests/rinterface/test_na.py::test_bool_NAInteger PASSED [167/860] >rpy2/tests/rinterface/test_na.py::test_NAInteger_binaryfunc SKIPPED (Python changed the behavior for int-inheriting objects.) [168/860] >rpy2/tests/rinterface/test_na.py::test_NAInteger_in_vector PASSED [169/860] >rpy2/tests/rinterface/test_na.py::test_R_to_NALogical PASSED [170/860] >rpy2/tests/rinterface/test_na.py::test_NALogical_repr PASSED [171/860] >rpy2/tests/rinterface/test_na.py::test_NALogical_str PASSED [172/860] >rpy2/tests/rinterface/test_na.py::test_bool_NALogical PASSED [173/860] >rpy2/tests/rinterface/test_na.py::test_NALogical_to_r PASSED [174/860] >rpy2/tests/rinterface/test_na.py::test_NALogical_in_vector PASSED [175/860] >rpy2/tests/rinterface/test_na.py::test_R_to_NAReal PASSED [176/860] >rpy2/tests/rinterface/test_na.py::test_NAReal_to_r PASSED [177/860] >rpy2/tests/rinterface/test_na.py::test_bool_NAReal PASSED [178/860] >rpy2/tests/rinterface/test_na.py::test_NAReal_binaryfunc PASSED [179/860] >rpy2/tests/rinterface/test_na.py::test_NAReal_in_vector PASSED [180/860] >rpy2/tests/rinterface/test_na.py::test_NAReal_repr PASSED [181/860] >rpy2/tests/rinterface/test_na.py::test_NAReal_str PASSED [182/860] >rpy2/tests/rinterface/test_na.py::test_r_to_NACharacter PASSED [183/860] >rpy2/tests/rinterface/test_na.py::test_NACharacter_repr PASSED [184/860] >rpy2/tests/rinterface/test_na.py::test_NACharacter_str PASSED [185/860] >rpy2/tests/rinterface/test_na.py::test_NACharacter_to_r PASSED [186/860] >rpy2/tests/rinterface/test_na.py::test_NACharacter_in_vector PASSED [187/860] >rpy2/tests/rinterface/test_na.py::test_R_to_NAComplex PASSED [188/860] >rpy2/tests/rinterface/test_na.py::test_NAComplex_to_r PASSED [189/860] >rpy2/tests/rinterface/test_na.py::test_bool_NAComplex PASSED [190/860] >rpy2/tests/rinterface/test_noinitialization.py::test_set_initoptions SKIPPED (Can only be tested before R is initialized.) [191/860] >rpy2/tests/rinterface/test_noinitialization.py::test_assert_isready SKIPPED (Can only be tested before R is initialized.) [192/860] >rpy2/tests/rinterface/test_noinitialization.py::test_assert_environment_geitem SKIPPED (Can only be tested before R is initialized.) [193/860] >rpy2/tests/rinterface/test_noinitialization.py::test_assert_rternalize SKIPPED (Can only be tested before R is initialized.) [194/860] >rpy2/tests/rinterface/test_openrlib.py::test_dlopen_invalid PASSED [195/860] >rpy2/tests/rinterface/test_openrlib.py::test_get_dataptr_fallback PASSED [196/860] >rpy2/tests/rinterface/test_openrlib.py::test_get_symbol_or_fallback PASSED [197/860] >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[IntSexpVector-value0-INTEGER_ELT-_get_integer_elt_fallback] PASSED [198/860] >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[BoolSexpVector-value1-LOGICAL_ELT-_get_logical_elt_fallback] PASSED [199/860] >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[FloatSexpVector-value2-REAL_ELT-_get_real_elt_fallback] PASSED [200/860] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[IntSexpVector-value0-_set_integer_elt_fallback-_get_integer_elt_fallback] PASSED [201/860] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[BoolSexpVector-value1-_set_logical_elt_fallback-_get_logical_elt_fallback] PASSED [202/860] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[FloatSexpVector-value2-_set_real_elt_fallback-_get_real_elt_fallback] PASSED [203/860] >rpy2/tests/rinterface/test_sexp.py::test_invalid_init PASSED [204/860] >rpy2/tests/rinterface/test_sexp.py::test_init_from_existing PASSED [205/860] >rpy2/tests/rinterface/test_sexp.py::test_typeof PASSED [206/860] >rpy2/tests/rinterface/test_sexp.py::test_get PASSED [207/860] >rpy2/tests/rinterface/test_sexp.py::test_list_attrs[IntSexpVector] PASSED [208/860] >rpy2/tests/rinterface/test_sexp.py::test_list_attrs[ListSexpVector] PASSED [209/860] >rpy2/tests/rinterface/test_sexp.py::test_do_slot PASSED [210/860] >rpy2/tests/rinterface/test_sexp.py::test_names PASSED [211/860] >rpy2/tests/rinterface/test_sexp.py::test_names_set PASSED [212/860] >rpy2/tests/rinterface/test_sexp.py::test_names_set_invalid PASSED [213/860] >rpy2/tests/rinterface/test_sexp.py::test_do_slot_missing PASSED [214/860] >rpy2/tests/rinterface/test_sexp.py::test_do_slot_not_string PASSED [215/860] >rpy2/tests/rinterface/test_sexp.py::test_do_slot_empty_string PASSED [216/860] >rpy2/tests/rinterface/test_sexp.py::test_do_slot_assign_create PASSED [217/860] >rpy2/tests/rinterface/test_sexp.py::test_do_slot_reassign PASSED [218/860] >rpy2/tests/rinterface/test_sexp.py::test_do_slot_assign_empty_string PASSED [219/860] >rpy2/tests/rinterface/test_sexp.py::test_sexp_rsame_true PASSED [220/860] >rpy2/tests/rinterface/test_sexp.py::test_sexp_rsame_false PASSED [221/860] >rpy2/tests/rinterface/test_sexp.py::test_sexp_rsame_invalid PASSED [222/860] >rpy2/tests/rinterface/test_sexp.py::test___sexp__ PASSED [223/860] >rpy2/tests/rinterface/test_sexp.py::test_rclass_get PASSED [224/860] >rpy2/tests/rinterface/test_sexp.py::test_rclass_get_sym PASSED [225/860] >rpy2/tests/rinterface/test_sexp.py::test_rclass_set PASSED [226/860] >rpy2/tests/rinterface/test_sexp.py::test_rclass_set_invalid PASSED [227/860] >rpy2/tests/rinterface/test_sexp.py::test__sexp__wrongtypeof PASSED [228/860] >rpy2/tests/rinterface/test_sexp.py::test__sexp__set PASSED [229/860] >rpy2/tests/rinterface/test_sexp.py::test_deepcopy XFAIL (WIP) [230/860] >rpy2/tests/rinterface/test_sexp.py::test_rid PASSED [231/860] >rpy2/tests/rinterface/test_sexp.py::test_NULL_nonzero PASSED [232/860] >rpy2/tests/rinterface/test_sexp.py::test_charsxp_encoding PASSED [233/860] >rpy2/tests/rinterface/test_sexp.py::test_charsxp_nchar PASSED [234/860] >rpy2/tests/rinterface/test_sexp.py::test_missingtype PASSED [235/860] >rpy2/tests/rinterface/test_symbol.py::test_new_invalid PASSED [236/860] >rpy2/tests/rinterface/test_symbol.py::test_new_missing PASSED [237/860] >rpy2/tests/rinterface/test_symbol.py::test_new_fromstring PASSED [238/860] >rpy2/tests/rinterface/test_symbol.py::test_new_str PASSED [239/860] >rpy2/tests/rinterface/test_threading.py::test_threading__initr SKIPPED (Can only be tested before R is initialized.) [240/860] >rpy2/tests/rinterface/test_threading.py::test_threading_initr_simple SKIPPED (Can only be tested before R is initialized.) [241/860] >rpy2/tests/rinterface/test_vector_bool.py::test_init_from_seqr PASSED [242/860] >rpy2/tests/rinterface/test_vector_bool.py::test_from_int_memoryview PASSED [243/860] >rpy2/tests/rinterface/test_vector_bool.py::test_from_bool_memoryview PASSED [244/860] >rpy2/tests/rinterface/test_vector_bool.py::test_getitem PASSED [245/860] >rpy2/tests/rinterface/test_vector_bool.py::test_setitem PASSED [246/860] >rpy2/tests/rinterface/test_vector_bool.py::test_getslice PASSED [247/860] >rpy2/tests/rinterface/test_vector_bool.py::test_getslice_negative PASSED [248/860] >rpy2/tests/rinterface/test_vector_bool.py::test_setslice PASSED [249/860] >rpy2/tests/rinterface/test_vector_bool.py::test_setslice_negative PASSED [250/860] >rpy2/tests/rinterface/test_vector_bool.py::test_index PASSED [251/860] >rpy2/tests/rinterface/test_vector_byte.py::test_init_from_bytes_in_seq PASSED [252/860] >rpy2/tests/rinterface/test_vector_byte.py::test_init_from_seq_of_bytes PASSED [253/860] >rpy2/tests/rinterface/test_vector_byte.py::test_init_from_bytes PASSED [254/860] >rpy2/tests/rinterface/test_vector_byte.py::test_init_from_seq_invalid_byte PASSED [255/860] >rpy2/tests/rinterface/test_vector_byte.py::test_from_memoryview PASSED [256/860] >rpy2/tests/rinterface/test_vector_byte.py::test_getitem PASSED [257/860] >rpy2/tests/rinterface/test_vector_byte.py::test_getitem_slice PASSED [258/860] >rpy2/tests/rinterface/test_vector_byte.py::test_setitem PASSED [259/860] >rpy2/tests/rinterface/test_vector_byte.py::test_setitem_int PASSED [260/860] >rpy2/tests/rinterface/test_vector_byte.py::test_setitem_int_invalid PASSED [261/860] >rpy2/tests/rinterface/test_vector_byte.py::test_setitem_slice PASSED [262/860] >rpy2/tests/rinterface/test_vector_byte.py::test_setitem_slice_invalid PASSED [263/860] >rpy2/tests/rinterface/test_vector_complex.py::test_init_from_seqr PASSED [264/860] >rpy2/tests/rinterface/test_vector_complex.py::test_init_from_seq_invalid_item PASSED [265/860] >rpy2/tests/rinterface/test_vector_complex.py::test_getitem PASSED [266/860] >rpy2/tests/rinterface/test_vector_complex.py::test_setitem PASSED [267/860] >rpy2/tests/rinterface/test_vector_complex.py::test_getslice PASSED [268/860] >rpy2/tests/rinterface/test_vector_complex.py::test_getslice_negative PASSED [269/860] >rpy2/tests/rinterface/test_vector_complex.py::test_setslice PASSED [270/860] >rpy2/tests/rinterface/test_vector_complex.py::test_setslice_negative PASSED [271/860] >rpy2/tests/rinterface/test_vector_complex.py::test_index PASSED [272/860] >rpy2/tests/rinterface/test_vector_float.py::test_init_from_seq PASSED [273/860] >rpy2/tests/rinterface/test_vector_float.py::test_init_from_iter PASSED [274/860] >rpy2/tests/rinterface/test_vector_float.py::test_init_From_seq_invalid_float PASSED [275/860] >rpy2/tests/rinterface/test_vector_float.py::test_from_memoryview PASSED [276/860] >rpy2/tests/rinterface/test_vector_float.py::test_from_int_memoryview PASSED [277/860] >rpy2/tests/rinterface/test_vector_float.py::test_from_long_memoryview PASSED [278/860] >rpy2/tests/rinterface/test_vector_float.py::test_getitem PASSED [279/860] >rpy2/tests/rinterface/test_vector_float.py::test_setitem PASSED [280/860] >rpy2/tests/rinterface/test_vector_float.py::test_getslice PASSED [281/860] >rpy2/tests/rinterface/test_vector_float.py::test_setslice PASSED [282/860] >rpy2/tests/rinterface/test_vector_int.py::test_init_from_iter PASSED [283/860] >rpy2/tests/rinterface/test_vector_int.py::test_init_from_seq_invalid_item PASSED [284/860] >rpy2/tests/rinterface/test_vector_int.py::test_init_from_seq_invalid_overflow SKIPPED (WIP) [285/860] >rpy2/tests/rinterface/test_vector_int.py::test_from_long_memoryview PASSED [286/860] >rpy2/tests/rinterface/test_vector_int.py::test_from_intarray_object PASSED [287/860] >rpy2/tests/rinterface/test_vector_int.py::test_from_longarray_object PASSED [288/860] >rpy2/tests/rinterface/test_vector_int.py::test_from_tuple_object PASSED [289/860] >rpy2/tests/rinterface/test_vector_int.py::test_getitem PASSED [290/860] >rpy2/tests/rinterface/test_vector_int.py::test_setitem PASSED [291/860] >rpy2/tests/rinterface/test_vector_int.py::test_getslice PASSED [292/860] >rpy2/tests/rinterface/test_vector_int.py::test_getslice_negative PASSED [293/860] >rpy2/tests/rinterface/test_vector_int.py::test_setslice PASSED [294/860] >rpy2/tests/rinterface/test_vector_int.py::test_setslice_negative PASSED [295/860] >rpy2/tests/rinterface/test_vector_int.py::test_index PASSED [296/860] >rpy2/tests/rinterface/test_vector_int.py::test_getitem_negative_outffbound PASSED [297/860] >rpy2/tests/rinterface/test_vector_int.py::test_getitem_outofbound PASSED [298/860] >rpy2/tests/rinterface/test_vector_int.py::test_getitem_outofbound_overmaxsize PASSED [299/860] >rpy2/tests/rinterface/test_vector_int.py::test_getslice_missingboundary PASSED [300/860] >rpy2/tests/rinterface/test_vector_int.py::test_setitem_outffbound PASSED [301/860] >rpy2/tests/rinterface/test_vector_int.py::test_memoryview_2d PASSED [302/860] >rpy2/tests/rinterface/test_vector_int.py::test_memoryview_3d PASSED [303/860] >rpy2/tests/rinterface/test_vector_int.py::test_array_protocol PASSED [304/860] >rpy2/tests/rinterface/test_vector_lang.py::test_init PASSED [305/860] >rpy2/tests/rinterface/test_vector_lang.py::test_init_invalid PASSED [306/860] >rpy2/tests/rinterface/test_vector_lang.py::test_rclass PASSED [307/860] >rpy2/tests/rinterface/test_vector_lang.py::test_getitem PASSED [308/860] >rpy2/tests/rinterface/test_vector_lang.py::test_setitem PASSED [309/860] >rpy2/tests/rinterface/test_vector_lang.py::test_expression PASSED [310/860] >rpy2/tests/rinterface/test_vector_list.py::test_init_from_seq PASSED [311/860] >rpy2/tests/rinterface/test_vector_list.py::test_init_From_seq_invalid_elt PASSED [312/860] >rpy2/tests/rinterface/test_vector_list.py::test_getitem PASSED [313/860] >rpy2/tests/rinterface/test_vector_list.py::test_setitem[BoolSexpVector-value_param0-assert_equal_sequence] PASSED [314/860] >rpy2/tests/rinterface/test_vector_list.py::test_setitem[int-9-eq] PASSED [315/860] >rpy2/tests/rinterface/test_vector_list.py::test_getslice PASSED [316/860] >rpy2/tests/rinterface/test_vector_list.py::test_setslice PASSED [317/860] >rpy2/tests/rinterface/test_vector_numpy.py::test_array_struct_int PASSED [318/860] >rpy2/tests/rinterface/test_vector_numpy.py::test_array_struct_double PASSED [319/860] >rpy2/tests/rinterface/test_vector_numpy.py::test_array_struct_complex SKIPPED (WIP) [320/860] >rpy2/tests/rinterface/test_vector_numpy.py::test_array_struct_boolean PASSED [321/860] >rpy2/tests/rinterface/test_vector_numpy.py::test_array_shape_len3 PASSED [322/860] >rpy2/tests/rinterface/test_vector_pairlist.py::test_init_from_r PASSED [323/860] >rpy2/tests/rinterface/test_vector_pairlist.py::test_names PASSED [324/860] >rpy2/tests/rinterface/test_vector_pairlist.py::test_getitem_pairlist PASSED [325/860] >rpy2/tests/rinterface/test_vector_pairlist.py::test_getslice_pairlist PASSED [326/860] >rpy2/tests/rinterface/test_vector_pairlist.py::test_getslice_pairlist_issue380 PASSED [327/860] >rpy2/tests/rinterface/test_vector_str.py::test_init_from_seqr PASSED [328/860] >rpy2/tests/rinterface/test_vector_str.py::test_init_from_seq_invalid_item PASSED [329/860] >rpy2/tests/rinterface/test_vector_str.py::test_getitem PASSED [330/860] >rpy2/tests/rinterface/test_vector_str.py::test_setitem[boo] PASSED [331/860] >rpy2/tests/rinterface/test_vector_str.py::test_setitem[value1] PASSED [332/860] >rpy2/tests/rinterface/test_vector_str.py::test_getslice PASSED [333/860] >rpy2/tests/rinterface/test_vector_str.py::test_getslice_negative PASSED [334/860] >rpy2/tests/rinterface/test_vector_str.py::test_setslice PASSED [335/860] >rpy2/tests/rinterface/test_vector_str.py::test_setslice_negative PASSED [336/860] >rpy2/tests/rinterface/test_vector_str.py::test_index PASSED [337/860] >rpy2/tests/rinterface/test_vector_str.py::test_non_asciil PASSED [338/860] >rpy2/tests/rinterface/test_vectors.py::test_int PASSED [339/860] >rpy2/tests/rinterface/test_vectors.py::test_float PASSED [340/860] >rpy2/tests/rinterface/test_vectors.py::test_str PASSED [341/860] >rpy2/tests/rinterface/test_vectors.py::test_bool PASSED [342/860] >rpy2/tests/rinterface/test_vectors.py::test_complex PASSED [343/860] >rpy2/tests/rinterface/test_vectors.py::test_byte PASSED [344/860] >rpy2/tests/rinterface/test_vectors.py::test_del PASSED [345/860] >rpy2/tests/rinterface/test_vectors.py::test_from_bool PASSED [346/860] >rpy2/tests/rinterface/test_vectors.py::test_from_int PASSED [347/860] >rpy2/tests/rinterface/test_vectors.py::test_from_invalid_no_length PASSED [348/860] >rpy2/tests/rinterface/test_vectors.py::test_from_float PASSED [349/860] >rpy2/tests/rinterface/test_vectors.py::test_from_float_nan PASSED [350/860] >rpy2/tests/rinterface/test_vectors.py::test_from_complex PASSED [351/860] >rpy2/tests/rinterface/test_vectors.py::test_from_string PASSED [352/860] >rpy2/tests/rinterface/test_vectors.py::test_from_list PASSED [353/860] >rpy2/tests/rinterface/test_vectors.py::test_missing_R_Preserve_object_bug PASSED [354/860] >rpy2/tests/rinterface/test_vectors.py::test_invalid_rtype PASSED [355/860] >rpy2/tests/rinterface/test_vectors.py::test_invalid_not_vector_rtype PASSED [356/860] >rpy2/tests/rinterface/test_vectors.py::test_instantiate_without_initr PASSED [357/860] >rpy2/tests/rlike/test_container.py::TestOrdDict::test_new PASSED [358/860] >rpy2/tests/rlike/test_container.py::TestOrdDict::test_new_invalid PASSED [359/860] >rpy2/tests/rlike/test_container.py::TestOrdDict::test_notimplemented_operators PASSED [360/860] >rpy2/tests/rlike/test_container.py::TestOrdDict::test_repr PASSED [361/860] >rpy2/tests/rlike/test_container.py::TestOrdDict::test_iter PASSED [362/860] 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>rpy2/tests/robjects/test_packages_utils.py::test_default_symbol_resolve_noconflicts[symbol_mapping0-expected_conflict0-expected_resolution0] PASSED [585/860] >rpy2/tests/robjects/test_packages_utils.py::test_default_symbol_resolve_noconflicts[symbol_mapping1-expected_conflict1-expected_resolution1] PASSED [586/860] >rpy2/tests/robjects/test_packages_utils.py::test_default_symbol_resolve_noconflicts[symbol_mapping2-expected_conflict2-expected_resolution2] PASSED [587/860] >rpy2/tests/robjects/test_packages_utils.py::test___map_symbols PASSED [588/860] >rpy2/tests/robjects/test_packages_utils.py::test__fix_map_symbols_invalidonconflict PASSED [589/860] >rpy2/tests/robjects/test_packages_utils.py::test__fix_map_symbols_conflictwarn PASSED [590/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::testActivate PASSED [591/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::testActivateTwice PASSED [592/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_list[ListVector] PASSED [593/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_list[ListSexpVector] PASSED [594/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_dataframe PASSED [595/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_dataframe_columnnames PASSED [596/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_dataframe_warns_duplicated_index PASSED [597/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series PASSED [598/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int[i] PASSED [599/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int[int320] PASSED [600/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int[int8] PASSED [601/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int[int16] PASSED [602/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int[int321] PASSED [603/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int[int64] PASSED [604/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int[uint8] PASSED [605/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int[uint16] PASSED [606/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int[Int32Dtype] PASSED [607/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int[Int64Dtype] PASSED [608/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_dataframe_int_nan[dtype0] PASSED [609/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_dataframe_int_nan[dtype1] PASSED [610/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int_nan[dtype0] PASSED [611/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int_nan[dtype1] PASSED [612/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_str[O-data0] PASSED [613/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_str[O-data1] PASSED [614/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_str[O-data2] PASSED [615/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_str[O-data3] PASSED [616/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_str[dtype1-data0] PASSED [617/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_str[dtype1-data1] PASSED [618/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_str[dtype1-data2] PASSED [619/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_str[dtype1-data3] PASSED [620/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_mixed PASSED [621/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_bool[Series-<lambda>-bool-data0] PASSED [622/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_bool[Series-<lambda>-bool-data1] PASSED [623/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_bool[Series-<lambda>-dtype1-data0] PASSED [624/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_bool[Series-<lambda>-dtype1-data1] PASSED [625/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_bool[DataFrame-<lambda>-bool-data0] PASSED [626/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_bool[DataFrame-<lambda>-bool-data1] PASSED [627/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_bool[DataFrame-<lambda>-dtype1-data0] PASSED [628/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_bool[DataFrame-<lambda>-dtype1-data1] PASSED [629/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_float[float-data0] PASSED [630/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_float[float-data1] PASSED [631/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_float[dtype1-data0] PASSED [632/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_float[dtype1-data1] PASSED [633/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_obj_allnone PASSED [634/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_issue264 PASSED [635/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_object2String PASSED [636/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_object2String_with_None PASSED [637/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_factor2Category PASSED [638/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_factorwithNA2Category PASSED [639/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_orderedFactor2Category PASSED [640/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_category2Factor PASSED [641/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_categorywithNA2Factor PASSED [642/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_orderedCategory2Factor PASSED [643/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_datetime2posixct PASSED [644/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_datetime2posixct_withNA PASSED [645/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_date2posixct PASSED [646/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_timeR2Pandas PASSED [647/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_posixct_in_dataframe_to_pandas PASSED [648/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_repr PASSED [649/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_ri2pandas[NULL-py_rownames0-colnames0] PASSED [650/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_ri2pandas[NULL-py_rownames0-colnames1] PASSED [651/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_ri2pandas[c("a", "b")-py_rownames1-colnames0] PASSED [652/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_ri2pandas[c("a", "b")-py_rownames1-colnames1] PASSED [653/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test__records_to_columns[list(list(x=1, y=3), list(x=2, y=4))-names0-values0] PASSED [654/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test__records_to_columns[list(list(x=1), list(x=2, y=4))-names1-values1] PASSED [655/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test__flatten_dataframe[data.frame( a = c("a", "b"), b = c(1, 2))-names0-values0] PASSED [656/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test__flatten_dataframe[data.frame( a = c("a", "b"), b = I(list(list(x=1, y=3), list(x=2, y=4))))-names1-values1] PASSED [657/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_dataframe_with_list[data.frame( a = c("a", "b"), b = I(list(list(x=1, y=3), list(x=2, y=4))))-names0-values0] PASSED [658/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_dataframe_with_list[data.frame( b = I(list(list(x=1, y=3), list(x=2, y=4))))-names1-values1] PASSED [659/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_dataframe_with_list[aggregate(gear ~ am, mtcars, function(x) c(mean = mean(x), sd = sd(x)), simplify=FALSE)-names2-values2] PASSED [660/860] >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_ri2pandas_issue207 PASSED [661/860] >rpy2/tests/robjects/test_robjects.py::test_getitem PASSED [662/860] >rpy2/tests/robjects/test_robjects.py::test_eval PASSED [663/860] >rpy2/tests/robjects/test_robjects.py::test_items PASSED [664/860] >rpy2/tests/robjects/test_robjects.py::test_values PASSED [665/860] >rpy2/tests/robjects/test_robjects.py::test_init PASSED [666/860] >rpy2/tests/robjects/test_robjects.py::test_r_repr PASSED [667/860] >rpy2/tests/robjects/test_robjects.py::test_str PASSED [668/860] >rpy2/tests/robjects/test_robjects.py::test_rclass PASSED [669/860] >rpy2/tests/robjects/test_robjects.py::test_rclass_set PASSED [670/860] >rpy2/tests/robjects/test_robjects.py::test_rclass_set_usingstring PASSED [671/860] >rpy2/tests/robjects/test_robjects.py::test_rclass_str PASSED [672/860] >rpy2/tests/robjects/test_robjects.py::test_do_slot PASSED [673/860] >rpy2/tests/robjects/test_robjects.py::test_slots PASSED [674/860] >rpy2/tests/robjects/test_rs4.py::test_slotnames PASSED [675/860] >rpy2/tests/robjects/test_rs4.py::test_isclass PASSED [676/860] >rpy2/tests/robjects/test_rs4.py::test_validobject PASSED [677/860] >rpy2/tests/robjects/test_serialization.py::test_pickle PASSED [678/860] >rpy2/tests/robjects/test_translated_function.py::test_init_invalid PASSED [679/860] >rpy2/tests/robjects/test_translated_function.py::test_init PASSED [680/860] >rpy2/tests/robjects/test_translated_function.py::test_init_with_translation PASSED [681/860] >rpy2/tests/robjects/test_translated_function.py::test_call PASSED [682/860] >rpy2/tests/robjects/test_vector.py::test_init PASSED [683/860] >rpy2/tests/robjects/test_vector.py::test_vector_navalue[StrVector-expected_na0] PASSED [684/860] >rpy2/tests/robjects/test_vector.py::test_vector_navalue[IntVector-NA_integer_] PASSED [685/860] >rpy2/tests/robjects/test_vector.py::test_vector_navalue[FloatVector-NA_real_] PASSED [686/860] >rpy2/tests/robjects/test_vector.py::test_vector_navalue[BoolVector-NA] PASSED [687/860] >rpy2/tests/robjects/test_vector.py::test_vector_navalue[ComplexVector-NA_complex_] PASSED [688/860] >rpy2/tests/robjects/test_vector.py::test_init_vectors[StrVector-values0] PASSED [689/860] >rpy2/tests/robjects/test_vector.py::test_init_vectors[IntVector-values1] PASSED [690/860] >rpy2/tests/robjects/test_vector.py::test_init_vectors[FloatVector-values2] PASSED [691/860] >rpy2/tests/robjects/test_vector.py::test_init_vectors[BoolVector-values3] PASSED [692/860] >rpy2/tests/robjects/test_vector.py::test_new_listvector[vec0] PASSED [693/860] >rpy2/tests/robjects/test_vector.py::test_new_listvector[vec1] PASSED [694/860] >rpy2/tests/robjects/test_vector.py::test_new_listvector[vec2] PASSED [695/860] >rpy2/tests/robjects/test_vector.py::test_strvector_factor PASSED [696/860] >rpy2/tests/robjects/test_vector.py::test_add_operator PASSED [697/860] >rpy2/tests/robjects/test_vector.py::test_r_add_operator PASSED [698/860] >rpy2/tests/robjects/test_vector.py::test_r_sub_operator PASSED [699/860] >rpy2/tests/robjects/test_vector.py::test_r_mult_operator PASSED [700/860] >rpy2/tests/robjects/test_vector.py::test_r_matmul_operator PASSED [701/860] >rpy2/tests/robjects/test_vector.py::test_r_power_operator PASSED [702/860] >rpy2/tests/robjects/test_vector.py::test_r_truediv PASSED [703/860] >rpy2/tests/robjects/test_vector.py::test_r_floor_division PASSED [704/860] >rpy2/tests/robjects/test_vector.py::test_r_mod PASSED [705/860] >rpy2/tests/robjects/test_vector.py::test_r_and PASSED [706/860] >rpy2/tests/robjects/test_vector.py::test_r_or PASSED [707/860] >rpy2/tests/robjects/test_vector.py::test_r_invert PASSED [708/860] >rpy2/tests/robjects/test_vector.py::test_r_lt PASSED [709/860] >rpy2/tests/robjects/test_vector.py::test_r_le PASSED [710/860] >rpy2/tests/robjects/test_vector.py::test_r_gt PASSED [711/860] >rpy2/tests/robjects/test_vector.py::test_r_ge PASSED [712/860] >rpy2/tests/robjects/test_vector.py::test_r_eq PASSED [713/860] >rpy2/tests/robjects/test_vector.py::test_r_ne PASSED [714/860] >rpy2/tests/robjects/test_vector.py::test_r_neg PASSED [715/860] >rpy2/tests/robjects/test_vector.py::test_contains PASSED [716/860] >rpy2/tests/robjects/test_vector.py::test_getitem_int[StrVector-values0] PASSED [717/860] >rpy2/tests/robjects/test_vector.py::test_getitem_int[IntVector-values1] PASSED [718/860] >rpy2/tests/robjects/test_vector.py::test_getitem_int[FloatVector-values2] PASSED [719/860] >rpy2/tests/robjects/test_vector.py::test_getitem_int[BoolVector-values3] PASSED [720/860] >rpy2/tests/robjects/test_vector.py::test_getitem_outofbounds PASSED [721/860] >rpy2/tests/robjects/test_vector.py::test_getitem_invalidtype[StrVector-values0] PASSED [722/860] >rpy2/tests/robjects/test_vector.py::test_getitem_invalidtype[IntVector-values1] PASSED [723/860] >rpy2/tests/robjects/test_vector.py::test_getitem_invalidtype[FloatVector-values2] PASSED [724/860] >rpy2/tests/robjects/test_vector.py::test_getitem_invalidtype[BoolVector-values3] PASSED [725/860] >rpy2/tests/robjects/test_vector.py::test_setitem PASSED [726/860] >rpy2/tests/robjects/test_vector.py::test_setitem_outofbounds PASSED [727/860] >rpy2/tests/robjects/test_vector.py::test_setitem_invalidtype[StrVector-values0] PASSED [728/860] >rpy2/tests/robjects/test_vector.py::test_setitem_invalidtype[IntVector-values1] PASSED [729/860] >rpy2/tests/robjects/test_vector.py::test_setitem_invalidtype[FloatVector-values2] PASSED [730/860] >rpy2/tests/robjects/test_vector.py::test_setitem_invalidtype[BoolVector-values3] PASSED [731/860] >rpy2/tests/robjects/test_vector.py::test_getnames PASSED [732/860] >rpy2/tests/robjects/test_vector.py::test_setnames PASSED [733/860] >rpy2/tests/robjects/test_vector.py::test_nainteger PASSED [734/860] >rpy2/tests/robjects/test_vector.py::test_tabulate PASSED [735/860] >rpy2/tests/robjects/test_vector.py::test_nareal PASSED [736/860] >rpy2/tests/robjects/test_vector.py::test_nalogical PASSED [737/860] >rpy2/tests/robjects/test_vector.py::test_nacomplex XPASS (Edge case with conversion.) [738/860] >rpy2/tests/robjects/test_vector.py::test_nacomplex_workaround PASSED [739/860] >rpy2/tests/robjects/test_vector.py::test_nacharacter PASSED [740/860] >rpy2/tests/robjects/test_vector.py::test_int_repr PASSED [741/860] >rpy2/tests/robjects/test_vector.py::test_list_repr PASSED [742/860] >rpy2/tests/robjects/test_vector.py::test_float_repr PASSED [743/860] >rpy2/tests/robjects/test_vector.py::test_repr_html[params0] PASSED [744/860] >rpy2/tests/robjects/test_vector.py::test_repr_html[params1] PASSED [745/860] >rpy2/tests/robjects/test_vector.py::test_repr_html[params2] PASSED [746/860] >rpy2/tests/robjects/test_vector.py::test_repr_html[params3] PASSED [747/860] >rpy2/tests/robjects/test_vector.py::test_repr_nonvectorinlist PASSED [748/860] >rpy2/tests/robjects/test_vector.py::test_items PASSED [749/860] >rpy2/tests/robjects/test_vector.py::test_itemsnonames PASSED [750/860] >rpy2/tests/robjects/test_vector.py::test_sequence_to_vector PASSED [751/860] >rpy2/tests/robjects/test_vector.py::test_sample PASSED [752/860] >rpy2/tests/robjects/test_vector.py::test_sample_probabilities PASSED [753/860] >rpy2/tests/robjects/test_vector.py::test_sample_probabilities_novector PASSED [754/860] >rpy2/tests/robjects/test_vector.py::test_sample_probabilities_error_len PASSED [755/860] >rpy2/tests/robjects/test_vector.py::test_sample_error PASSED [756/860] >rpy2/tests/robjects/test_vector.py::test_sample_replacement PASSED [757/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXlt_from_invalidpythontime PASSED [758/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXlt_from_pythontime PASSED [759/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXlt_getitem XFAIL (wday mismatch between R and Python (issue #523)) [760/860] >rpy2/tests/robjects/test_vector_datetime.py::testPOSIXlt_repr PASSED [761/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXct_from_invalidpythontime PASSED [762/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXct_from_invalidobject PASSED [763/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXct_from_python_times[None-x0] PASSED [764/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXct_from_python_times[None-x1] PASSED [765/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXct_datetime_from_timestamp[None] PASSED [766/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXct_from_python_times[America/New_York-x0] PASSED [767/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXct_from_python_times[America/New_York-x1] PASSED [768/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXct_datetime_from_timestamp[America/New_York] PASSED [769/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXct_from_python_times[Australia/Sydney-x0] PASSED [770/860] >rpy2/tests/robjects/test_vector_datetime.py::test_POSIXct_from_python_times[Australia/Sydney-x1] PASSED [771/860] 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[860/860] > >=========================================================================================== FAILURES =========================================================================================== >_____________________________________________________________________________________ test_push_localscope _____________________________________________________________________________________ > >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>, clean_globalenv = None > > @pytest.mark.skipif(IPython is None, > reason='The optional package IPython cannot be imported.') > @pytest.mark.skipif(not has_numpy, reason='numpy not installed') > def test_push_localscope(ipython_with_magic, clean_globalenv): > """Test that Rpush looks for variables in the local scope first.""" > > ipython_with_magic.run_cell( > textwrap.dedent( > """ > def rmagic_addone(u): > %Rpush u > %R result = u+1 > %Rpull result > return result[0] > u = 0 > result = rmagic_addone(12344) > """) > ) >> result = ipython_with_magic.user_ns['result'] >E KeyError: 'result' > >clean_globalenv = None >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> > >rpy2/tests/ipython/test_rmagic.py:122: KeyError >------------------------------------------------------------------------------------- Captured stdout call ------------------------------------------------------------------------------------- >--------------------------------------------------------------------------- >RRuntimeError Traceback (most recent call last) >Cell In[1], line 7 > 5 return result[0] > 6 u = 0 >----> 7 result = rmagic_addone(12344) > >Cell In[1], line 3, in rmagic_addone(u) > 1 def rmagic_addone(u): > 2 get_ipython().run_line_magic('Rpush', 'u') >----> 3 get_ipython().run_line_magic('R', 'result = u+1') > 4 get_ipython().run_line_magic('Rpull', 'result') > 5 return result[0] > >File /usr/lib/python3.11/site-packages/IPython/core/interactiveshell.py:2456, in InteractiveShell.run_line_magic(self, magic_name, line, _stack_depth) > 2454 kwargs['local_ns'] = self.get_local_scope(stack_depth) > 2455 with self.builtin_trap: >-> 2456 result = fn(*args, **kwargs) > 2458 # The code below prevents the output from being displayed > 2459 # when using magics with decorator @output_can_be_silenced > 2460 # when the last Python token in the expression is a ';'. > 2461 if getattr(fn, magic.MAGIC_OUTPUT_CAN_BE_SILENCED, False): > >File /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/ipython/rmagic.py:929, in RMagics.R(self, line, cell, local_ns) > 926 else: > 927 cell_display = CELL_DISPLAY_DEFAULT >--> 929 tmpd = self.setup_graphics(args) > 931 text_output = '' > 932 display_data = [] > >File /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/ipython/rmagic.py:631, in RMagics.setup_graphics(self, args) > 628 if self.device in DEVICES_STATIC_RASTER: > 629 # Note: that %% is to pass into R for interpolation there. > 630 rfunc = getattr(grdevices, self.device) >--> 631 rfunc(f'{tmpd_fix_slashes}/Rplots%%03d.{self.device}', > 632 **argdict) > 633 elif self.device == 'svg': > 634 self.cairo.CairoSVG(f'{tmpd_fix_slashes}/Rplot.svg', > 635 **argdict) > >File /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/robjects/functions.py:208, in SignatureTranslatedFunction.__call__(self, *args, **kwargs) > 206 v = kwargs.pop(k) > 207 kwargs[r_k] = v >--> 208 return (super(SignatureTranslatedFunction, self) > 209 .__call__(*args, **kwargs)) > >File /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/robjects/functions.py:131, in Function.__call__(self, *args, **kwargs) > 129 else: > 130 new_kwargs[k] = cv.py2rpy(v) >--> 131 res = super(Function, self).__call__(*new_args, **new_kwargs) > 132 res = cv.rpy2py(res) > 133 return res > >File /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/rinterface_lib/conversion.py:45, in _cdata_res_to_rinterface.<locals>._(*args, **kwargs) > 44 def _(*args, **kwargs): >---> 45 cdata = function(*args, **kwargs) > 46 # TODO: test cdata is of the expected CType > 47 return _cdata_to_rinterface(cdata) > >File /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/rinterface.py:873, in SexpClosure.__call__(self, *args, **kwargs) > 866 res = rmemory.protect( > 867 openrlib.rlib.R_tryEval( > 868 call_r, > 869 call_context.__sexp__._cdata, > 870 error_occured) > 871 ) > 872 if error_occured[0]: >--> 873 raise embedded.RRuntimeError(_rinterface._geterrmessage()) > 874 return res > >RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : > X11 is not available > >-------------------------------------------------------------------------------------- Captured log call --------------------------------------------------------------------------------------- >WARNING rpy2.rinterface_lib.callbacks:callbacks.py:124 R[write to console]: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : > X11 is not available >__________________________________________________________________ test_run_cell_with_error["a" + 1-rmagic.RInterpreterError] __________________________________________________________________ > >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>, clean_globalenv = None, rcode = '"a" + 1' >exception_expr = 'rmagic.RInterpreterError' > > @pytest.mark.skipif(IPython is None, > reason='The optional package IPython cannot be imported.') > @pytest.mark.parametrize('rcode,exception_expr', > (('"a" + 1', 'rmagic.RInterpreterError'), > ('"a" + ', 'rpy2.rinterface_lib._rinterface_capi.RParsingError'))) > def test_run_cell_with_error(ipython_with_magic, clean_globalenv, > rcode, exception_expr): > """Run an R block with an error.""" > > with pytest.raises(eval(exception_expr)): >> ipython_with_magic.run_line_magic('R', rcode) > >clean_globalenv = None >exception_expr = 'rmagic.RInterpreterError' >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> >rcode = '"a" + 1' > >rpy2/tests/ipython/test_rmagic.py:136: >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ >/usr/lib/python3.11/site-packages/IPython/core/interactiveshell.py:2456: in run_line_magic > result = fn(*args, **kwargs) > _stack_depth = 1 > args = ['"a" + 1'] > fn = <bound method RMagics.R of <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50>> > kwargs = {'local_ns': {'clean_globalenv': None, > 'exception_expr': 'rmagic.RInterpreterError', > 'ipython_with_magic': <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>, > 'rcode': '"a" + 1'}} > line = '"a" + 1' > magic_arg_s = '"a" + 1' > magic_name = 'R' > self = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> > stack_depth = 1 >rpy2/ipython/rmagic.py:929: in R > tmpd = self.setup_graphics(args) > args = Namespace(input=None, output=None, noreturn=False, width=None, height=None, pointsize=None, bg=None, isolate_svgs=True, units=None, res=None, type=None, converter=None, display=None, code=['"a"', '+', '1']) > cell = None > cell_display = <function CELL_DISPLAY_DEFAULT at 0x7fdfa10d3100> > code = '"a" + 1' > converter = <rpy2.robjects.conversion.Converter object at 0x7fdfa196d9d0> > line = '"a" + 1' > line_mode = True > local_ns = {'clean_globalenv': None, > 'exception_expr': 'rmagic.RInterpreterError', > 'ipython_with_magic': <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>, > 'rcode': '"a" + 1'} > return_output = True > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> >rpy2/ipython/rmagic.py:631: in setup_graphics > rfunc(f'{tmpd_fix_slashes}/Rplots%%03d.{self.device}', > argdict = {} > args = Namespace(input=None, output=None, noreturn=False, width=None, height=None, pointsize=None, bg=None, isolate_svgs=True, units=None, res=None, type=None, converter=None, display=None, code=['"a"', '+', '1']) > name = 'res' > plot_arg_names = ['width', 'height', 'pointsize', 'bg', 'type', 'units', 'res'] > rfunc = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> > tmpd = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmplnsm1d1p' > tmpd_fix_slashes = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmplnsm1d1p' > val = None >rpy2/robjects/functions.py:208: in __call__ > return (super(SignatureTranslatedFunction, self) > __class__ = <class 'rpy2.robjects.functions.SignatureTranslatedFunction'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmplnsm1d1p/Rplots%%03d.png',) > kwargs = {} > prm_translate = OrderedDict([('filename', 'filename'), > ('width', 'width'), > ('height', 'height'), > ('units', 'units'), > ('pointsize', 'pointsize'), > ('bg', 'bg'), > ('res', 'res'), > ('___', '...'), > ('type', 'type'), > ('antialias', 'antialias')]) > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/robjects/functions.py:131: in __call__ > res = super(Function, self).__call__(*new_args, **new_kwargs) > __class__ = <class 'rpy2.robjects.functions.Function'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmplnsm1d1p/Rplots%%03d.png',) > cv = <rpy2.robjects.conversion.Converter object at 0x7fdfab8eabd0> > kwargs = {} > new_args = ['/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmplnsm1d1p/Rplots%%03d.png'] > new_kwargs = {} > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/rinterface_lib/conversion.py:45: in _ > cdata = function(*args, **kwargs) > args = (<rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',), > '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmplnsm1d1p/Rplots%%03d.png') > function = <function SexpClosure.__call__ at 0x7fdfab6ba2a0> > kwargs = {} >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmplnsm1d1p/Rplots%%03d.png',), kwargs = {}, error_occured = <cdata 'int *' owning 4 bytes> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b715410>, call_r = <cdata 'struct SEXPREC *' 0x55be0231b6c0> >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4], res = <cdata 'struct SEXPREC *' NULL> > > @_cdata_res_to_rinterface > def __call__(self, *args, **kwargs) -> Sexp: > error_occured = _rinterface.ffi.new('int *', 0) > with memorymanagement.rmemory() as rmemory: > call_r = rmemory.protect( > _rinterface.build_rcall(self.__sexp__._cdata, args, > kwargs.items())) > call_context = evaluation_context.get() > res = rmemory.protect( > openrlib.rlib.R_tryEval( > call_r, > call_context.__sexp__._cdata, > error_occured) > ) > if error_occured[0]: >> raise embedded.RRuntimeError(_rinterface._geterrmessage()) >E rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >E X11 is not available > >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmplnsm1d1p/Rplots%%03d.png',) >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4] >call_r = <cdata 'struct SEXPREC *' 0x55be0231b6c0> >error_occured = <cdata 'int *' owning 4 bytes> >kwargs = {} >res = <cdata 'struct SEXPREC *' NULL> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b715410> >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > >rpy2/rinterface.py:873: RRuntimeError >-------------------------------------------------------------------------------------- Captured log call --------------------------------------------------------------------------------------- >WARNING rpy2.rinterface_lib.callbacks:callbacks.py:124 R[write to console]: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : > X11 is not available >_____________________________________________________ test_run_cell_with_error["a" + -rpy2.rinterface_lib._rinterface_capi.RParsingError] ______________________________________________________ > >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>, clean_globalenv = None, rcode = '"a" + ' >exception_expr = 'rpy2.rinterface_lib._rinterface_capi.RParsingError' > > @pytest.mark.skipif(IPython is None, > reason='The optional package IPython cannot be imported.') > @pytest.mark.parametrize('rcode,exception_expr', > (('"a" + 1', 'rmagic.RInterpreterError'), > ('"a" + ', 'rpy2.rinterface_lib._rinterface_capi.RParsingError'))) > def test_run_cell_with_error(ipython_with_magic, clean_globalenv, > rcode, exception_expr): > """Run an R block with an error.""" > > with pytest.raises(eval(exception_expr)): >> ipython_with_magic.run_line_magic('R', rcode) > >clean_globalenv = None >exception_expr = 'rpy2.rinterface_lib._rinterface_capi.RParsingError' >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> >rcode = '"a" + ' > >rpy2/tests/ipython/test_rmagic.py:136: >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ >/usr/lib/python3.11/site-packages/IPython/core/interactiveshell.py:2456: in run_line_magic > result = fn(*args, **kwargs) > _stack_depth = 1 > args = ['"a" + '] > fn = <bound method RMagics.R of <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50>> > kwargs = {'local_ns': {'clean_globalenv': None, > 'exception_expr': 'rpy2.rinterface_lib._rinterface_capi.RParsingError', > 'ipython_with_magic': <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>, > 'rcode': '"a" + '}} > line = '"a" + ' > magic_arg_s = '"a" + ' > magic_name = 'R' > self = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> > stack_depth = 1 >rpy2/ipython/rmagic.py:929: in R > tmpd = self.setup_graphics(args) > args = Namespace(input=None, output=None, noreturn=False, width=None, height=None, pointsize=None, bg=None, isolate_svgs=True, units=None, res=None, type=None, converter=None, display=None, code=['"a"', '+']) > cell = None > cell_display = <function CELL_DISPLAY_DEFAULT at 0x7fdfa10d3100> > code = '"a" +' > converter = <rpy2.robjects.conversion.Converter object at 0x7fdfa196d9d0> > line = '"a" + ' > line_mode = True > local_ns = {'clean_globalenv': None, > 'exception_expr': 'rpy2.rinterface_lib._rinterface_capi.RParsingError', > 'ipython_with_magic': <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>, > 'rcode': '"a" + '} > return_output = True > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> >rpy2/ipython/rmagic.py:631: in setup_graphics > rfunc(f'{tmpd_fix_slashes}/Rplots%%03d.{self.device}', > argdict = {} > args = Namespace(input=None, output=None, noreturn=False, width=None, height=None, pointsize=None, bg=None, isolate_svgs=True, units=None, res=None, type=None, converter=None, display=None, code=['"a"', '+']) > name = 'res' > plot_arg_names = ['width', 'height', 'pointsize', 'bg', 'type', 'units', 'res'] > rfunc = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> > tmpd = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpyxw_nr9a' > tmpd_fix_slashes = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpyxw_nr9a' > val = None >rpy2/robjects/functions.py:208: in __call__ > return (super(SignatureTranslatedFunction, self) > __class__ = <class 'rpy2.robjects.functions.SignatureTranslatedFunction'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpyxw_nr9a/Rplots%%03d.png',) > kwargs = {} > prm_translate = OrderedDict([('filename', 'filename'), > ('width', 'width'), > ('height', 'height'), > ('units', 'units'), > ('pointsize', 'pointsize'), > ('bg', 'bg'), > ('res', 'res'), > ('___', '...'), > ('type', 'type'), > ('antialias', 'antialias')]) > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/robjects/functions.py:131: in __call__ > res = super(Function, self).__call__(*new_args, **new_kwargs) > __class__ = <class 'rpy2.robjects.functions.Function'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpyxw_nr9a/Rplots%%03d.png',) > cv = <rpy2.robjects.conversion.Converter object at 0x7fdfab8eabd0> > kwargs = {} > new_args = ['/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpyxw_nr9a/Rplots%%03d.png'] > new_kwargs = {} > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/rinterface_lib/conversion.py:45: in _ > cdata = function(*args, **kwargs) > args = (<rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',), > '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpyxw_nr9a/Rplots%%03d.png') > function = <function SexpClosure.__call__ at 0x7fdfab6ba2a0> > kwargs = {} >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpyxw_nr9a/Rplots%%03d.png',), kwargs = {}, error_occured = <cdata 'int *' owning 4 bytes> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b607790>, call_r = <cdata 'struct SEXPREC *' 0x55be0230abc8> >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4], res = <cdata 'struct SEXPREC *' NULL> > > @_cdata_res_to_rinterface > def __call__(self, *args, **kwargs) -> Sexp: > error_occured = _rinterface.ffi.new('int *', 0) > with memorymanagement.rmemory() as rmemory: > call_r = rmemory.protect( > _rinterface.build_rcall(self.__sexp__._cdata, args, > kwargs.items())) > call_context = evaluation_context.get() > res = rmemory.protect( > openrlib.rlib.R_tryEval( > call_r, > call_context.__sexp__._cdata, > error_occured) > ) > if error_occured[0]: >> raise embedded.RRuntimeError(_rinterface._geterrmessage()) >E rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >E X11 is not available > >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpyxw_nr9a/Rplots%%03d.png',) >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4] >call_r = <cdata 'struct SEXPREC *' 0x55be0230abc8> >error_occured = <cdata 'int *' owning 4 bytes> >kwargs = {} >res = <cdata 'struct SEXPREC *' NULL> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b607790> >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > >rpy2/rinterface.py:873: RRuntimeError >-------------------------------------------------------------------------------------- Captured log call --------------------------------------------------------------------------------------- >WARNING rpy2.rinterface_lib.callbacks:callbacks.py:124 R[write to console]: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : > X11 is not available >_______________________________________________________________________________________ test_cell_magic ________________________________________________________________________________________ > >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>, clean_globalenv = None > > @pytest.mark.skipif(IPython is None, > reason='The optional package IPython cannot be imported.') > @pytest.mark.skipif(not has_numpy, reason='numpy not installed') > def test_cell_magic(ipython_with_magic, clean_globalenv): > ipython_with_magic.push({'x': np.arange(5), 'y': np.array([3,5,4,6,7])}) > # For now, print statements are commented out because they print > # erroneous ERRORs when running via rpy2.tests > snippet = textwrap.dedent(""" > print(summary(a)) > plot(x, y, pch=23, bg='orange', cex=2) > plot(x, x) > print(summary(x)) > r = resid(a) > xc = coef(a) > """) >> ipython_with_magic.run_cell_magic('R', '-i x,y -o r,xc -w 150 -u mm a=lm(y~x)', > snippet) > >clean_globalenv = None >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> >snippet = ('\n' > 'print(summary(a))\n' > "plot(x, y, pch=23, bg='orange', cex=2)\n" > 'plot(x, x)\n' > 'print(summary(x))\n' > 'r = resid(a)\n' > 'xc = coef(a)\n') > >rpy2/tests/ipython/test_rmagic.py:324: >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ >/usr/lib/python3.11/site-packages/IPython/core/interactiveshell.py:2517: in run_cell_magic > result = fn(*args, **kwargs) > args = ('-i x,y -o r,xc -w 150 -u mm a=lm(y~x)', > '\n' > 'print(summary(a))\n' > "plot(x, y, pch=23, bg='orange', cex=2)\n" > 'plot(x, x)\n' > 'print(summary(x))\n' > 'r = resid(a)\n' > 'xc = coef(a)\n') > cell = ('\n' > 'print(summary(a))\n' > "plot(x, y, pch=23, bg='orange', cex=2)\n" > 'plot(x, x)\n' > 'print(summary(x))\n' > 'r = resid(a)\n' > 'xc = coef(a)\n') > fn = <bound method RMagics.R of <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50>> > kwargs = {'local_ns': {'In': [''], > 'Out': {}, > 'X': [1, 2], > 'Z': <rpy2.rinterface.IntSexpVector object at 0x7fdf9b27c450> [13], > '_': '', > '__': '', > '___': '', > '__builtin__': <module 'builtins' (built-in)>, > '__builtins__': <module 'builtins' (built-in)>, > '__doc__': 'Automatically created module for IPython interactive ' > 'environment', > '__loader__': None, > '__name__': '__main__', > '__package__': None, > '__spec__': None, > '_dh': [PosixPath('/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14')], > '_ih': [''], > '_oh': {}, > 'df': a b c >0 1 bar NaN >1 5 foo 20.0, > 'exit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'get_ipython': <bound method InteractiveShell.get_ipython of <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>>, > 'open': <function open at 0x7fdfa91a9f80>, > 'py_obj': ['a', 'b', 'a'] >Categories (2, object): ['a', 'b'], > 'quit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'rmagic_addone': <function rmagic_addone at 0x7fdfa0b06840>, > 'u': 0, > 'x': array([0, 1, 2, 3, 4]), > 'y': array([3, 5, 4, 6, 7])}} > line = '-i x,y -o r,xc -w 150 -u mm a=lm(y~x)' > magic_arg_s = '-i x,y -o r,xc -w 150 -u mm a=lm(y~x)' > magic_name = 'R' > self = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> > stack_depth = 2 >rpy2/ipython/rmagic.py:929: in R > tmpd = self.setup_graphics(args) > arg = 'y' > args = Namespace(input=['x,y'], output=['r,xc'], noreturn=False, width=150.0, height=None, pointsize=None, bg=None, isolate_svgs=True, units='mm', res=72, type=None, converter=None, display=None, code=['a=lm(y~x)']) > cell = ('\n' > 'print(summary(a))\n' > "plot(x, y, pch=23, bg='orange', cex=2)\n" > 'plot(x, x)\n' > 'print(summary(x))\n' > 'r = resid(a)\n' > 'xc = coef(a)\n') > cell_display = <function CELL_DISPLAY_DEFAULT at 0x7fdfa10d3100> > code = ('a=lm(y~x)\n' > 'print(summary(a))\n' > "plot(x, y, pch=23, bg='orange', cex=2)\n" > 'plot(x, x)\n' > 'print(summary(x))\n' > 'r = resid(a)\n' > 'xc = coef(a)\n') > converter = <rpy2.robjects.conversion.Converter object at 0x7fdfa196d9d0> > cv = <rpy2.robjects.conversion.Converter object at 0x7fdfa0c34550> > line = '-i x,y -o r,xc -w 150 -u mm a=lm(y~x)' > line_mode = False > local_ns = {'In': [''], > 'Out': {}, > 'X': [1, 2], > 'Z': <rpy2.rinterface.IntSexpVector object at 0x7fdf9b27c450> [13], > '_': '', > '__': '', > '___': '', > '__builtin__': <module 'builtins' (built-in)>, > '__builtins__': <module 'builtins' (built-in)>, > '__doc__': 'Automatically created module for IPython interactive environment', > '__loader__': None, > '__name__': '__main__', > '__package__': None, > '__spec__': None, > '_dh': [PosixPath('/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14')], > '_ih': [''], > '_oh': {}, > 'df': a b c >0 1 bar NaN >1 5 foo 20.0, > 'exit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'get_ipython': <bound method InteractiveShell.get_ipython of <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>>, > 'open': <function open at 0x7fdfa91a9f80>, > 'py_obj': ['a', 'b', 'a'] >Categories (2, object): ['a', 'b'], > 'quit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'rmagic_addone': <function rmagic_addone at 0x7fdfa0b06840>, > 'u': 0, > 'x': array([0, 1, 2, 3, 4]), > 'y': array([3, 5, 4, 6, 7])} > return_output = False > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> >rpy2/ipython/rmagic.py:631: in setup_graphics > rfunc(f'{tmpd_fix_slashes}/Rplots%%03d.{self.device}', > argdict = {'res': 72, 'units': 'mm', 'width': 150.0} > args = Namespace(input=['x,y'], output=['r,xc'], noreturn=False, width=150.0, height=None, pointsize=None, bg=None, isolate_svgs=True, units='mm', res=72, type=None, converter=None, display=None, code=['a=lm(y~x)']) > name = 'res' > plot_arg_names = ['width', 'height', 'pointsize', 'bg', 'type', 'units', 'res'] > rfunc = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> > tmpd = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpvjab6hwb' > tmpd_fix_slashes = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpvjab6hwb' > val = 72 >rpy2/robjects/functions.py:208: in __call__ > return (super(SignatureTranslatedFunction, self) > __class__ = <class 'rpy2.robjects.functions.SignatureTranslatedFunction'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpvjab6hwb/Rplots%%03d.png',) > k = 'res' > kwargs = {'res': 72, 'units': 'mm', 'width': 150.0} > prm_translate = OrderedDict([('filename', 'filename'), > ('width', 'width'), > ('height', 'height'), > ('units', 'units'), > ('pointsize', 'pointsize'), > ('bg', 'bg'), > ('res', 'res'), > ('___', '...'), > ('type', 'type'), > ('antialias', 'antialias')]) > r_k = 'res' > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > v = 72 >rpy2/robjects/functions.py:131: in __call__ > res = super(Function, self).__call__(*new_args, **new_kwargs) > __class__ = <class 'rpy2.robjects.functions.Function'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpvjab6hwb/Rplots%%03d.png',) > cv = <rpy2.robjects.conversion.Converter object at 0x7fdfab8eabd0> > k = 'res' > kwargs = {'res': 72, 'units': 'mm', 'width': 150.0} > new_args = ['/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpvjab6hwb/Rplots%%03d.png'] > new_kwargs = {'res': 72, 'units': 'mm', 'width': 150.0} > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > v = 72 >rpy2/rinterface_lib/conversion.py:45: in _ > cdata = function(*args, **kwargs) > args = (<rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',), > '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpvjab6hwb/Rplots%%03d.png') > function = <function SexpClosure.__call__ at 0x7fdfab6ba2a0> > kwargs = {'res': 72, 'units': 'mm', 'width': 150.0} >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpvjab6hwb/Rplots%%03d.png',), kwargs = {'res': 72, 'units': 'mm', 'width': 150.0}, error_occured = <cdata 'int *' owning 4 bytes> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b75a3d0>, call_r = <cdata 'struct SEXPREC *' 0x55be01f2ded0> >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4], res = <cdata 'struct SEXPREC *' NULL> > > @_cdata_res_to_rinterface > def __call__(self, *args, **kwargs) -> Sexp: > error_occured = _rinterface.ffi.new('int *', 0) > with memorymanagement.rmemory() as rmemory: > call_r = rmemory.protect( > _rinterface.build_rcall(self.__sexp__._cdata, args, > kwargs.items())) > call_context = evaluation_context.get() > res = rmemory.protect( > openrlib.rlib.R_tryEval( > call_r, > call_context.__sexp__._cdata, > error_occured) > ) > if error_occured[0]: >> raise embedded.RRuntimeError(_rinterface._geterrmessage()) >E rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >E X11 is not available > >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpvjab6hwb/Rplots%%03d.png',) >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4] >call_r = <cdata 'struct SEXPREC *' 0x55be01f2ded0> >error_occured = <cdata 'int *' owning 4 bytes> >kwargs = {'res': 72, 'units': 'mm', 'width': 150.0} >res = <cdata 'struct SEXPREC *' NULL> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b75a3d0> >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > >rpy2/rinterface.py:873: RRuntimeError >-------------------------------------------------------------------------------------- Captured log call --------------------------------------------------------------------------------------- >WARNING rpy2.rinterface_lib.callbacks:callbacks.py:124 R[write to console]: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : > X11 is not available >________________________________________________________________________________ test_cell_magic_localconverter ________________________________________________________________________________ > >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>, clean_globalenv = None > > @pytest.mark.skipif(IPython is None, > reason='The optional package IPython cannot be imported.') > def test_cell_magic_localconverter(ipython_with_magic, clean_globalenv): > x = (1,2,3) > from rpy2.rinterface import IntSexpVector > def tuple_str(tpl): > res = IntSexpVector(tpl) > return res > from rpy2.robjects.conversion import Converter > my_converter = Converter('my converter') > my_converter.py2rpy.register(tuple, tuple_str) > from rpy2.robjects import default_converter > > foo = default_converter + my_converter > > snippet = textwrap.dedent(""" > x > """) > > # Missing converter/object with the specified name. > ipython_with_magic.push({'x': x}) > with pytest.raises(NameError): > ipython_with_magic.run_cell_magic('R', '-i x -c foo', > snippet) > > # Converter/object is not a converter. > ipython_with_magic.push({'x': x, > 'foo': 123}) > with pytest.raises(TypeError): > ipython_with_magic.run_cell_magic('R', '-i x -c foo', > snippet) > > ipython_with_magic.push({'x': x, > 'foo': foo}) > with pytest.raises(NotImplementedError): > ipython_with_magic.run_cell_magic('R', '-i x', snippet) > >> ipython_with_magic.run_cell_magic('R', '-i x -c foo', > snippet) > >Converter = <class 'rpy2.robjects.conversion.Converter'> >IntSexpVector = <class 'rpy2.rinterface.IntSexpVector'> >clean_globalenv = None >default_converter = <rpy2.robjects.conversion.Converter object at 0x7fdfab8eabd0> >foo = <rpy2.robjects.conversion.Converter object at 0x7fdf9af8e5d0> >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> >my_converter = <rpy2.robjects.conversion.Converter object at 0x7fdf9af8f9d0> >snippet = '\nx\n' >tuple_str = <function test_cell_magic_localconverter.<locals>.tuple_str at 0x7fdfa097ade0> >x = (1, 2, 3) > >rpy2/tests/ipython/test_rmagic.py:367: >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ >/usr/lib/python3.11/site-packages/IPython/core/interactiveshell.py:2517: in run_cell_magic > result = fn(*args, **kwargs) > args = ('-i x -c foo', '\nx\n') > cell = '\nx\n' > fn = <bound method RMagics.R of <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50>> > kwargs = {'local_ns': {'In': [''], > 'Out': {}, > 'X': [1, 2], > 'Z': <rpy2.rinterface.IntSexpVector object at 0x7fdf9b27c450> [13], > '_': '', > '__': '', > '___': '', > '__builtin__': <module 'builtins' (built-in)>, > '__builtins__': <module 'builtins' (built-in)>, > '__doc__': 'Automatically created module for IPython interactive ' > 'environment', > '__loader__': None, > '__name__': '__main__', > '__package__': None, > '__spec__': None, > '_dh': [PosixPath('/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14')], > '_ih': [''], > '_oh': {}, > 'df': a b c >0 1 bar NaN >1 5 foo 20.0, > 'exit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'foo': <rpy2.robjects.conversion.Converter object at 0x7fdf9af8e5d0>, > 'get_ipython': <bound method InteractiveShell.get_ipython of <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>>, > 'open': <function open at 0x7fdfa91a9f80>, > 'py_obj': ['a', 'b', 'a'] >Categories (2, object): ['a', 'b'], > 'quit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'rmagic_addone': <function rmagic_addone at 0x7fdfa0b06840>, > 'u': 0, > 'x': (1, 2, 3), > 'y': array([3, 5, 4, 6, 7])}} > line = '-i x -c foo' > magic_arg_s = '-i x -c foo' > magic_name = 'R' > self = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> > stack_depth = 2 >rpy2/ipython/rmagic.py:929: in R > tmpd = self.setup_graphics(args) > arg = 'x' > args = Namespace(input=['x'], output=None, noreturn=False, width=None, height=None, pointsize=None, bg=None, isolate_svgs=True, units=None, res=None, type=None, converter='foo', display=None, code=[]) > cell = '\nx\n' > cell_display = <function CELL_DISPLAY_DEFAULT at 0x7fdfa10d3100> > code = '\nx\n' > converter = <rpy2.robjects.conversion.Converter object at 0x7fdf9af8e5d0> > cv = <rpy2.robjects.conversion.Converter object at 0x7fdf9af8fbd0> > line = '-i x -c foo' > line_mode = False > local_ns = {'In': [''], > 'Out': {}, > 'X': [1, 2], > 'Z': <rpy2.rinterface.IntSexpVector object at 0x7fdf9b27c450> [13], > '_': '', > '__': '', > '___': '', > '__builtin__': <module 'builtins' (built-in)>, > '__builtins__': <module 'builtins' (built-in)>, > '__doc__': 'Automatically created module for IPython interactive environment', > '__loader__': None, > '__name__': '__main__', > '__package__': None, > '__spec__': None, > '_dh': [PosixPath('/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14')], > '_ih': [''], > '_oh': {}, > 'df': a b c >0 1 bar NaN >1 5 foo 20.0, > 'exit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'foo': <rpy2.robjects.conversion.Converter object at 0x7fdf9af8e5d0>, > 'get_ipython': <bound method InteractiveShell.get_ipython of <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>>, > 'open': <function open at 0x7fdfa91a9f80>, > 'py_obj': ['a', 'b', 'a'] >Categories (2, object): ['a', 'b'], > 'quit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'rmagic_addone': <function rmagic_addone at 0x7fdfa0b06840>, > 'u': 0, > 'x': (1, 2, 3), > 'y': array([3, 5, 4, 6, 7])} > return_output = False > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> >rpy2/ipython/rmagic.py:631: in setup_graphics > rfunc(f'{tmpd_fix_slashes}/Rplots%%03d.{self.device}', > argdict = {} > args = Namespace(input=['x'], output=None, noreturn=False, width=None, height=None, pointsize=None, bg=None, isolate_svgs=True, units=None, res=None, type=None, converter='foo', display=None, code=[]) > name = 'res' > plot_arg_names = ['width', 'height', 'pointsize', 'bg', 'type', 'units', 'res'] > rfunc = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> > tmpd = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp0fyltmaz' > tmpd_fix_slashes = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp0fyltmaz' > val = None >rpy2/robjects/functions.py:208: in __call__ > return (super(SignatureTranslatedFunction, self) > __class__ = <class 'rpy2.robjects.functions.SignatureTranslatedFunction'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp0fyltmaz/Rplots%%03d.png',) > kwargs = {} > prm_translate = OrderedDict([('filename', 'filename'), > ('width', 'width'), > ('height', 'height'), > ('units', 'units'), > ('pointsize', 'pointsize'), > ('bg', 'bg'), > ('res', 'res'), > ('___', '...'), > ('type', 'type'), > ('antialias', 'antialias')]) > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/robjects/functions.py:131: in __call__ > res = super(Function, self).__call__(*new_args, **new_kwargs) > __class__ = <class 'rpy2.robjects.functions.Function'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp0fyltmaz/Rplots%%03d.png',) > cv = <rpy2.robjects.conversion.Converter object at 0x7fdfab8eabd0> > kwargs = {} > new_args = ['/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp0fyltmaz/Rplots%%03d.png'] > new_kwargs = {} > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/rinterface_lib/conversion.py:45: in _ > cdata = function(*args, **kwargs) > args = (<rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',), > '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp0fyltmaz/Rplots%%03d.png') > function = <function SexpClosure.__call__ at 0x7fdfab6ba2a0> > kwargs = {} >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp0fyltmaz/Rplots%%03d.png',), kwargs = {}, error_occured = <cdata 'int *' owning 4 bytes> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9af8c8d0>, call_r = <cdata 'struct SEXPREC *' 0x55be01eb3ba0> >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4], res = <cdata 'struct SEXPREC *' NULL> > > @_cdata_res_to_rinterface > def __call__(self, *args, **kwargs) -> Sexp: > error_occured = _rinterface.ffi.new('int *', 0) > with memorymanagement.rmemory() as rmemory: > call_r = rmemory.protect( > _rinterface.build_rcall(self.__sexp__._cdata, args, > kwargs.items())) > call_context = evaluation_context.get() > res = rmemory.protect( > openrlib.rlib.R_tryEval( > call_r, > call_context.__sexp__._cdata, > error_occured) > ) > if error_occured[0]: >> raise embedded.RRuntimeError(_rinterface._geterrmessage()) >E rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >E X11 is not available > >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmp0fyltmaz/Rplots%%03d.png',) >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4] >call_r = <cdata 'struct SEXPREC *' 0x55be01eb3ba0> >error_occured = <cdata 'int *' owning 4 bytes> >kwargs = {} >res = <cdata 'struct SEXPREC *' NULL> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9af8c8d0> >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > >rpy2/rinterface.py:873: RRuntimeError >-------------------------------------------------------------------------------------- Captured log call --------------------------------------------------------------------------------------- >WARNING rpy2.rinterface_lib.callbacks:callbacks.py:124 R[write to console]: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : > X11 is not available >____________________________________________________________________________________ test_rmagic_localscope ____________________________________________________________________________________ > >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>, clean_globalenv = None > > @pytest.mark.skipif(IPython is None, > reason='The optional package IPython cannot be imported.') > def test_rmagic_localscope(ipython_with_magic, clean_globalenv): > ipython_with_magic.push({'x': 0}) >> ipython_with_magic.run_line_magic('R', '-i x -o result result <-x+1') > >clean_globalenv = None >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> > >rpy2/tests/ipython/test_rmagic.py:388: >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ >/usr/lib/python3.11/site-packages/IPython/core/interactiveshell.py:2456: in run_line_magic > result = fn(*args, **kwargs) > _stack_depth = 1 > args = ['-i x -o result result <-x+1'] > fn = <bound method RMagics.R of <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50>> > kwargs = {'local_ns': {'clean_globalenv': None, > 'ipython_with_magic': <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>}} > line = '-i x -o result result <-x+1' > magic_arg_s = '-i x -o result result <-x+1' > magic_name = 'R' > self = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> > stack_depth = 1 >rpy2/ipython/rmagic.py:929: in R > tmpd = self.setup_graphics(args) > arg = 'x' > args = Namespace(input=['x'], output=['result'], noreturn=False, width=None, height=None, pointsize=None, bg=None, isolate_svgs=True, units=None, res=None, type=None, converter=None, display=None, code=['result', '<-x+1']) > cell = None > cell_display = <function CELL_DISPLAY_DEFAULT at 0x7fdfa10d3100> > code = 'result <-x+1' > converter = <rpy2.robjects.conversion.Converter object at 0x7fdfa196d9d0> > cv = <rpy2.robjects.conversion.Converter object at 0x7fdf9b2b0950> > line = '-i x -o result result <-x+1' > line_mode = True > local_ns = {'clean_globalenv': None, > 'ipython_with_magic': <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>} > return_output = True > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> >rpy2/ipython/rmagic.py:631: in setup_graphics > rfunc(f'{tmpd_fix_slashes}/Rplots%%03d.{self.device}', > argdict = {} > args = Namespace(input=['x'], output=['result'], noreturn=False, width=None, height=None, pointsize=None, bg=None, isolate_svgs=True, units=None, res=None, type=None, converter=None, display=None, code=['result', '<-x+1']) > name = 'res' > plot_arg_names = ['width', 'height', 'pointsize', 'bg', 'type', 'units', 'res'] > rfunc = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> > tmpd = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpc8c3o7m2' > tmpd_fix_slashes = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpc8c3o7m2' > val = None >rpy2/robjects/functions.py:208: in __call__ > return (super(SignatureTranslatedFunction, self) > __class__ = <class 'rpy2.robjects.functions.SignatureTranslatedFunction'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpc8c3o7m2/Rplots%%03d.png',) > kwargs = {} > prm_translate = OrderedDict([('filename', 'filename'), > ('width', 'width'), > ('height', 'height'), > ('units', 'units'), > ('pointsize', 'pointsize'), > ('bg', 'bg'), > ('res', 'res'), > ('___', '...'), > ('type', 'type'), > ('antialias', 'antialias')]) > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/robjects/functions.py:131: in __call__ > res = super(Function, self).__call__(*new_args, **new_kwargs) > __class__ = <class 'rpy2.robjects.functions.Function'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpc8c3o7m2/Rplots%%03d.png',) > cv = <rpy2.robjects.conversion.Converter object at 0x7fdfab8eabd0> > kwargs = {} > new_args = ['/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpc8c3o7m2/Rplots%%03d.png'] > new_kwargs = {} > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/rinterface_lib/conversion.py:45: in _ > cdata = function(*args, **kwargs) > args = (<rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',), > '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpc8c3o7m2/Rplots%%03d.png') > function = <function SexpClosure.__call__ at 0x7fdfab6ba2a0> > kwargs = {} >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpc8c3o7m2/Rplots%%03d.png',), kwargs = {}, error_occured = <cdata 'int *' owning 4 bytes> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b2b1050>, call_r = <cdata 'struct SEXPREC *' 0x55be01e45838> >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4], res = <cdata 'struct SEXPREC *' NULL> > > @_cdata_res_to_rinterface > def __call__(self, *args, **kwargs) -> Sexp: > error_occured = _rinterface.ffi.new('int *', 0) > with memorymanagement.rmemory() as rmemory: > call_r = rmemory.protect( > _rinterface.build_rcall(self.__sexp__._cdata, args, > kwargs.items())) > call_context = evaluation_context.get() > res = rmemory.protect( > openrlib.rlib.R_tryEval( > call_r, > call_context.__sexp__._cdata, > error_occured) > ) > if error_occured[0]: >> raise embedded.RRuntimeError(_rinterface._geterrmessage()) >E rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >E X11 is not available > >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpc8c3o7m2/Rplots%%03d.png',) >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4] >call_r = <cdata 'struct SEXPREC *' 0x55be01e45838> >error_occured = <cdata 'int *' owning 4 bytes> >kwargs = {} >res = <cdata 'struct SEXPREC *' NULL> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b2b1050> >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > >rpy2/rinterface.py:873: RRuntimeError >-------------------------------------------------------------------------------------- Captured log call --------------------------------------------------------------------------------------- >WARNING rpy2.rinterface_lib.callbacks:callbacks.py:124 R[write to console]: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : > X11 is not available >____________________________________________________________________________________ test_png_plotting_args ____________________________________________________________________________________ > >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>, clean_globalenv = None > > @pytest.mark.skipif(IPython is None, > reason='The optional package IPython cannot be imported.') > # TODO: There is no test here... > @pytest.mark.skipif(not has_numpy, reason='numpy not installed') > def test_png_plotting_args(ipython_with_magic, clean_globalenv): > '''Exercise the PNG plotting machinery''' > > ipython_with_magic.push({'x':np.arange(5), 'y':np.array([3,5,4,6,7])}) > > cell = ''' > plot(x, y, pch=23, bg='orange', cex=2) > ''' > > png_px_args = [' '.join(('--input=x,y --units=px',w,h,p)) for > w, h, p in product(['--width=400 ',''], > ['--height=400',''], > ['-p=10', ''])] > > for line in png_px_args: > ipython_with_magic.run_line_magic('Rdevice', 'png') >> ipython_with_magic.run_cell_magic('R', line, cell) > >cell = "\n plot(x, y, pch=23, bg='orange', cex=2)\n " >clean_globalenv = None >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> >line = '--input=x,y --units=px --width=400 --height=400 -p=10' >png_px_args = ['--input=x,y --units=px --width=400 --height=400 -p=10', > '--input=x,y --units=px --width=400 --height=400 ', > '--input=x,y --units=px --width=400 -p=10', > '--input=x,y --units=px --width=400 ', > '--input=x,y --units=px --height=400 -p=10', > '--input=x,y --units=px --height=400 ', > '--input=x,y --units=px -p=10', > '--input=x,y --units=px '] > >rpy2/tests/ipython/test_rmagic.py:429: >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ >/usr/lib/python3.11/site-packages/IPython/core/interactiveshell.py:2517: in run_cell_magic > result = fn(*args, **kwargs) > args = ('--input=x,y --units=px --width=400 --height=400 -p=10', > "\n plot(x, y, pch=23, bg='orange', cex=2)\n ") > cell = "\n plot(x, y, pch=23, bg='orange', cex=2)\n " > fn = <bound method RMagics.R of <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50>> > kwargs = {'local_ns': {'In': [''], > 'Out': {}, > 'X': [1, 2], > 'Z': <rpy2.rinterface.IntSexpVector object at 0x7fdf9b27c450> [13], > '_': '', > '__': '', > '___': '', > '__builtin__': <module 'builtins' (built-in)>, > '__builtins__': <module 'builtins' (built-in)>, > '__doc__': 'Automatically created module for IPython interactive ' > 'environment', > '__loader__': None, > '__name__': '__main__', > '__package__': None, > '__spec__': None, > '_dh': [PosixPath('/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14')], > '_ih': [''], > '_oh': {}, > 'df': a b c >0 1 bar NaN >1 5 foo 20.0, > 'exit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'foo': <rpy2.robjects.conversion.Converter object at 0x7fdf9af8e5d0>, > 'get_ipython': <bound method InteractiveShell.get_ipython of <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>>, > 'open': <function open at 0x7fdfa91a9f80>, > 'py_obj': ['a', 'b', 'a'] >Categories (2, object): ['a', 'b'], > 'quit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'rmagic_addone': <function rmagic_addone at 0x7fdfa0b06840>, > 'u': 0, > 'x': array([0, 1, 2, 3, 4]), > 'y': array([3, 5, 4, 6, 7])}} > line = '--input=x,y --units=px --width=400 --height=400 -p=10' > magic_arg_s = '--input=x,y --units=px --width=400 --height=400 -p=10' > magic_name = 'R' > self = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> > stack_depth = 2 >rpy2/ipython/rmagic.py:929: in R > tmpd = self.setup_graphics(args) > arg = 'y' > args = Namespace(input=['x,y'], output=None, noreturn=False, width=400.0, height=400.0, pointsize=10, bg=None, isolate_svgs=True, units='px', res=None, type=None, converter=None, display=None, code=[]) > cell = "\n plot(x, y, pch=23, bg='orange', cex=2)\n " > cell_display = <function CELL_DISPLAY_DEFAULT at 0x7fdfa10d3100> > code = "\n plot(x, y, pch=23, bg='orange', cex=2)\n " > converter = <rpy2.robjects.conversion.Converter object at 0x7fdfa196d9d0> > cv = <rpy2.robjects.conversion.Converter object at 0x7fdfa0bc2c10> > line = '--input=x,y --units=px --width=400 --height=400 -p=10' > line_mode = False > local_ns = {'In': [''], > 'Out': {}, > 'X': [1, 2], > 'Z': <rpy2.rinterface.IntSexpVector object at 0x7fdf9b27c450> [13], > '_': '', > '__': '', > '___': '', > '__builtin__': <module 'builtins' (built-in)>, > '__builtins__': <module 'builtins' (built-in)>, > '__doc__': 'Automatically created module for IPython interactive environment', > '__loader__': None, > '__name__': '__main__', > '__package__': None, > '__spec__': None, > '_dh': [PosixPath('/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14')], > '_ih': [''], > '_oh': {}, > 'df': a b c >0 1 bar NaN >1 5 foo 20.0, > 'exit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'foo': <rpy2.robjects.conversion.Converter object at 0x7fdf9af8e5d0>, > 'get_ipython': <bound method InteractiveShell.get_ipython of <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>>, > 'open': <function open at 0x7fdfa91a9f80>, > 'py_obj': ['a', 'b', 'a'] >Categories (2, object): ['a', 'b'], > 'quit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'rmagic_addone': <function rmagic_addone at 0x7fdfa0b06840>, > 'u': 0, > 'x': array([0, 1, 2, 3, 4]), > 'y': array([3, 5, 4, 6, 7])} > return_output = False > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> >rpy2/ipython/rmagic.py:631: in setup_graphics > rfunc(f'{tmpd_fix_slashes}/Rplots%%03d.{self.device}', > argdict = {'height': 400.0, 'pointsize': 10, 'units': 'px', 'width': 400.0} > args = Namespace(input=['x,y'], output=None, noreturn=False, width=400.0, height=400.0, pointsize=10, bg=None, isolate_svgs=True, units='px', res=None, type=None, converter=None, display=None, code=[]) > name = 'res' > plot_arg_names = ['width', 'height', 'pointsize', 'bg', 'type', 'units', 'res'] > rfunc = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> > tmpd = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpszmtf1ro' > tmpd_fix_slashes = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpszmtf1ro' > val = None >rpy2/robjects/functions.py:208: in __call__ > return (super(SignatureTranslatedFunction, self) > __class__ = <class 'rpy2.robjects.functions.SignatureTranslatedFunction'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpszmtf1ro/Rplots%%03d.png',) > k = 'units' > kwargs = {'height': 400.0, 'pointsize': 10, 'units': 'px', 'width': 400.0} > prm_translate = OrderedDict([('filename', 'filename'), > ('width', 'width'), > ('height', 'height'), > ('units', 'units'), > ('pointsize', 'pointsize'), > ('bg', 'bg'), > ('res', 'res'), > ('___', '...'), > ('type', 'type'), > ('antialias', 'antialias')]) > r_k = 'units' > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > v = 'px' >rpy2/robjects/functions.py:131: in __call__ > res = super(Function, self).__call__(*new_args, **new_kwargs) > __class__ = <class 'rpy2.robjects.functions.Function'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpszmtf1ro/Rplots%%03d.png',) > cv = <rpy2.robjects.conversion.Converter object at 0x7fdfab8eabd0> > k = 'units' > kwargs = {'height': 400.0, 'pointsize': 10, 'units': 'px', 'width': 400.0} > new_args = ['/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpszmtf1ro/Rplots%%03d.png'] > new_kwargs = {'height': 400.0, 'pointsize': 10, 'units': 'px', 'width': 400.0} > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > v = 'px' >rpy2/rinterface_lib/conversion.py:45: in _ > cdata = function(*args, **kwargs) > args = (<rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',), > '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpszmtf1ro/Rplots%%03d.png') > function = <function SexpClosure.__call__ at 0x7fdfab6ba2a0> > kwargs = {'height': 400.0, 'pointsize': 10, 'units': 'px', 'width': 400.0} >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpszmtf1ro/Rplots%%03d.png',), kwargs = {'height': 400.0, 'pointsize': 10, 'units': 'px', 'width': 400.0} >error_occured = <cdata 'int *' owning 4 bytes>, rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b0c2810>, call_r = <cdata 'struct SEXPREC *' 0x55be01e13c38> >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4], res = <cdata 'struct SEXPREC *' NULL> > > @_cdata_res_to_rinterface > def __call__(self, *args, **kwargs) -> Sexp: > error_occured = _rinterface.ffi.new('int *', 0) > with memorymanagement.rmemory() as rmemory: > call_r = rmemory.protect( > _rinterface.build_rcall(self.__sexp__._cdata, args, > kwargs.items())) > call_context = evaluation_context.get() > res = rmemory.protect( > openrlib.rlib.R_tryEval( > call_r, > call_context.__sexp__._cdata, > error_occured) > ) > if error_occured[0]: >> raise embedded.RRuntimeError(_rinterface._geterrmessage()) >E rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >E X11 is not available > >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpszmtf1ro/Rplots%%03d.png',) >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4] >call_r = <cdata 'struct SEXPREC *' 0x55be01e13c38> >error_occured = <cdata 'int *' owning 4 bytes> >kwargs = {'height': 400.0, 'pointsize': 10, 'units': 'px', 'width': 400.0} >res = <cdata 'struct SEXPREC *' NULL> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b0c2810> >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > >rpy2/rinterface.py:873: RRuntimeError >-------------------------------------------------------------------------------------- Captured log call --------------------------------------------------------------------------------------- >WARNING rpy2.rinterface_lib.callbacks:callbacks.py:124 R[write to console]: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : > X11 is not available >______________________________________________________________________________________ test_display_args _______________________________________________________________________________________ > >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>, clean_globalenv = None > > @pytest.mark.skipif(IPython is None, > reason='The optional package IPython cannot be imported.') > def test_display_args(ipython_with_magic, clean_globalenv): > > cell = ''' > x <- 123 > as.integer(x + 1) > ''' > > res = [] > def display(x, a): > res.append(x) > > with pytest.raises(NameError): > ipython_with_magic.run_cell_magic('R', '--display=mydisplay', cell) > > ipython_with_magic.push( > {'mydisplay': display} > ) > >> ipython_with_magic.run_cell_magic('R', '--display=mydisplay', cell) > >cell = '\n x <- 123\n as.integer(x + 1)\n ' >clean_globalenv = None >display = <function test_display_args.<locals>.display at 0x7fdfa097a520> >ipython_with_magic = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> >res = [] > >rpy2/tests/ipython/test_rmagic.py:452: >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ >/usr/lib/python3.11/site-packages/IPython/core/interactiveshell.py:2517: in run_cell_magic > result = fn(*args, **kwargs) > args = ('--display=mydisplay', '\n x <- 123\n as.integer(x + 1)\n ') > cell = '\n x <- 123\n as.integer(x + 1)\n ' > fn = <bound method RMagics.R of <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50>> > kwargs = {'local_ns': {'In': [''], > 'Out': {}, > 'X': [1, 2], > 'Z': <rpy2.rinterface.IntSexpVector object at 0x7fdf9b27c450> [13], > '_': '', > '__': '', > '___': '', > '__builtin__': <module 'builtins' (built-in)>, > '__builtins__': <module 'builtins' (built-in)>, > '__doc__': 'Automatically created module for IPython interactive ' > 'environment', > '__loader__': None, > '__name__': '__main__', > '__package__': None, > '__spec__': None, > '_dh': [PosixPath('/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14')], > '_ih': [''], > '_oh': {}, > 'df': a b c >0 1 bar NaN >1 5 foo 20.0, > 'exit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'foo': <rpy2.robjects.conversion.Converter object at 0x7fdf9af8e5d0>, > 'get_ipython': <bound method InteractiveShell.get_ipython of <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>>, > 'mydisplay': <function test_display_args.<locals>.display at 0x7fdfa097a520>, > 'open': <function open at 0x7fdfa91a9f80>, > 'py_obj': ['a', 'b', 'a'] >Categories (2, object): ['a', 'b'], > 'quit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'rmagic_addone': <function rmagic_addone at 0x7fdfa0b06840>, > 'u': 0, > 'x': array([0, 1, 2, 3, 4]), > 'y': array([3, 5, 4, 6, 7])}} > line = '--display=mydisplay' > magic_arg_s = '--display=mydisplay' > magic_name = 'R' > self = <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0> > stack_depth = 2 >rpy2/ipython/rmagic.py:929: in R > tmpd = self.setup_graphics(args) > args = Namespace(input=None, output=None, noreturn=False, width=None, height=None, pointsize=None, bg=None, isolate_svgs=True, units=None, res=None, type=None, converter=None, display='mydisplay', code=[]) > cell = '\n x <- 123\n as.integer(x + 1)\n ' > cell_display = <function test_display_args.<locals>.display at 0x7fdfa097a520> > code = '\n x <- 123\n as.integer(x + 1)\n ' > converter = <rpy2.robjects.conversion.Converter object at 0x7fdfa196d9d0> > line = '--display=mydisplay' > line_mode = False > local_ns = {'In': [''], > 'Out': {}, > 'X': [1, 2], > 'Z': <rpy2.rinterface.IntSexpVector object at 0x7fdf9b27c450> [13], > '_': '', > '__': '', > '___': '', > '__builtin__': <module 'builtins' (built-in)>, > '__builtins__': <module 'builtins' (built-in)>, > '__doc__': 'Automatically created module for IPython interactive environment', > '__loader__': None, > '__name__': '__main__', > '__package__': None, > '__spec__': None, > '_dh': [PosixPath('/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14')], > '_ih': [''], > '_oh': {}, > 'df': a b c >0 1 bar NaN >1 5 foo 20.0, > 'exit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'foo': <rpy2.robjects.conversion.Converter object at 0x7fdf9af8e5d0>, > 'get_ipython': <bound method InteractiveShell.get_ipython of <IPython.terminal.interactiveshell.TerminalInteractiveShell object at 0x7fdfa1e191d0>>, > 'mydisplay': <function test_display_args.<locals>.display at 0x7fdfa097a520>, > 'open': <function open at 0x7fdfa91a9f80>, > 'py_obj': ['a', 'b', 'a'] >Categories (2, object): ['a', 'b'], > 'quit': <IPython.core.autocall.ExitAutocall object at 0x7fdfa0e16350>, > 'rmagic_addone': <function rmagic_addone at 0x7fdfa0b06840>, > 'u': 0, > 'x': array([0, 1, 2, 3, 4]), > 'y': array([3, 5, 4, 6, 7])} > return_output = False > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> >rpy2/ipython/rmagic.py:631: in setup_graphics > rfunc(f'{tmpd_fix_slashes}/Rplots%%03d.{self.device}', > argdict = {} > args = Namespace(input=None, output=None, noreturn=False, width=None, height=None, pointsize=None, bg=None, isolate_svgs=True, units=None, res=None, type=None, converter=None, display='mydisplay', code=[]) > name = 'res' > plot_arg_names = ['width', 'height', 'pointsize', 'bg', 'type', 'units', 'res'] > rfunc = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > self = <rpy2.ipython.rmagic.RMagics object at 0x7fdfa0d15e50> > tmpd = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpw8tnqg_2' > tmpd_fix_slashes = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpw8tnqg_2' > val = None >rpy2/robjects/functions.py:208: in __call__ > return (super(SignatureTranslatedFunction, self) > __class__ = <class 'rpy2.robjects.functions.SignatureTranslatedFunction'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpw8tnqg_2/Rplots%%03d.png',) > kwargs = {} > prm_translate = OrderedDict([('filename', 'filename'), > ('width', 'width'), > ('height', 'height'), > ('units', 'units'), > ('pointsize', 'pointsize'), > ('bg', 'bg'), > ('res', 'res'), > ('___', '...'), > ('type', 'type'), > ('antialias', 'antialias')]) > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/robjects/functions.py:131: in __call__ > res = super(Function, self).__call__(*new_args, **new_kwargs) > __class__ = <class 'rpy2.robjects.functions.Function'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpw8tnqg_2/Rplots%%03d.png',) > cv = <rpy2.robjects.conversion.Converter object at 0x7fdfab8eabd0> > kwargs = {} > new_args = ['/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpw8tnqg_2/Rplots%%03d.png'] > new_kwargs = {} > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/rinterface_lib/conversion.py:45: in _ > cdata = function(*args, **kwargs) > args = (<rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',), > '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpw8tnqg_2/Rplots%%03d.png') > function = <function SexpClosure.__call__ at 0x7fdfab6ba2a0> > kwargs = {} >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpw8tnqg_2/Rplots%%03d.png',), kwargs = {}, error_occured = <cdata 'int *' owning 4 bytes> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b7cf2d0>, call_r = <cdata 'struct SEXPREC *' 0x55be01df68b0> >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4], res = <cdata 'struct SEXPREC *' NULL> > > @_cdata_res_to_rinterface > def __call__(self, *args, **kwargs) -> Sexp: > error_occured = _rinterface.ffi.new('int *', 0) > with memorymanagement.rmemory() as rmemory: > call_r = rmemory.protect( > _rinterface.build_rcall(self.__sexp__._cdata, args, > kwargs.items())) > call_context = evaluation_context.get() > res = rmemory.protect( > openrlib.rlib.R_tryEval( > call_r, > call_context.__sexp__._cdata, > error_occured) > ) > if error_occured[0]: >> raise embedded.RRuntimeError(_rinterface._geterrmessage()) >E rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >E X11 is not available > >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpw8tnqg_2/Rplots%%03d.png',) >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4] >call_r = <cdata 'struct SEXPREC *' 0x55be01df68b0> >error_occured = <cdata 'int *' owning 4 bytes> >kwargs = {} >res = <cdata 'struct SEXPREC *' NULL> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b7cf2d0> >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > >rpy2/rinterface.py:873: RRuntimeError >-------------------------------------------------------------------------------------- Captured log call --------------------------------------------------------------------------------------- >WARNING rpy2.rinterface_lib.callbacks:callbacks.py:124 R[write to console]: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : > X11 is not available >__________________________________________________________________________________ test_rendertobytes_noplot ___________________________________________________________________________________ > > @pytest.mark.xfail(os.name == 'nt', > reason='Windows produces non-empty file with no plot') > def test_rendertobytes_noplot(): >> with grdevices.render_to_bytesio(grdevices.png) as b: > > >rpy2/tests/robjects/lib/test_grdevices.py:26: >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ >/usr/lib/python3.11/contextlib.py:137: in __enter__ > return next(self.gen) > self = <contextlib._GeneratorContextManager object at 0x7fdf9af43990> >rpy2/robjects/lib/grdevices.py:82: in render_to_bytesio > device(fn, *device_args, **device_kwargs) > b = <_io.BytesIO object at 0x7fdfa0c66160> > current = 1 > device = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > device_args = () > device_kwargs = {} > fn = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpv1v4dm2l' >rpy2/robjects/functions.py:208: in __call__ > return (super(SignatureTranslatedFunction, self) > __class__ = <class 'rpy2.robjects.functions.SignatureTranslatedFunction'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpv1v4dm2l',) > kwargs = {} > prm_translate = OrderedDict([('filename', 'filename'), > ('width', 'width'), > ('height', 'height'), > ('units', 'units'), > ('pointsize', 'pointsize'), > ('bg', 'bg'), > ('res', 'res'), > ('___', '...'), > ('type', 'type'), > ('antialias', 'antialias')]) > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/robjects/functions.py:131: in __call__ > res = super(Function, self).__call__(*new_args, **new_kwargs) > __class__ = <class 'rpy2.robjects.functions.Function'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpv1v4dm2l',) > cv = <rpy2.robjects.conversion.Converter object at 0x7fdf9b75ae90> > kwargs = {} > new_args = ['/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpv1v4dm2l'] > new_kwargs = {} > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/rinterface_lib/conversion.py:45: in _ > cdata = function(*args, **kwargs) > args = (<rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',), > '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpv1v4dm2l') > function = <function SexpClosure.__call__ at 0x7fdfab6ba2a0> > kwargs = {} >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',), args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpv1v4dm2l',) >kwargs = {}, error_occured = <cdata 'int *' owning 4 bytes>, rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b2a6110> >call_r = <cdata 'struct SEXPREC *' 0x55be0eb4ed08>, call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4], res = <cdata 'struct SEXPREC *' NULL> > > @_cdata_res_to_rinterface > def __call__(self, *args, **kwargs) -> Sexp: > error_occured = _rinterface.ffi.new('int *', 0) > with memorymanagement.rmemory() as rmemory: > call_r = rmemory.protect( > _rinterface.build_rcall(self.__sexp__._cdata, args, > kwargs.items())) > call_context = evaluation_context.get() > res = rmemory.protect( > openrlib.rlib.R_tryEval( > call_r, > call_context.__sexp__._cdata, > error_occured) > ) > if error_occured[0]: >> raise embedded.RRuntimeError(_rinterface._geterrmessage()) >E rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >E X11 is not available > >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpv1v4dm2l',) >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4] >call_r = <cdata 'struct SEXPREC *' 0x55be0eb4ed08> >error_occured = <cdata 'int *' owning 4 bytes> >kwargs = {} >res = <cdata 'struct SEXPREC *' NULL> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b2a6110> >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > >rpy2/rinterface.py:873: RRuntimeError >-------------------------------------------------------------------------------------- Captured log call --------------------------------------------------------------------------------------- >WARNING rpy2.rinterface_lib.callbacks:callbacks.py:124 R[write to console]: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : > X11 is not available >______________________________________________________________________________________ test_rendertofile _______________________________________________________________________________________ > > def test_rendertofile(): > fn = tempfile.mktemp(suffix=".png") > with set_filenames_to_delete() as todelete: > todelete.add(fn) > >> with grdevices.render_to_file(grdevices.png, > filename=fn) as d: > >fn = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpbo_n746p.png' >todelete = {'/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpbo_n746p.png'} > >rpy2/tests/robjects/lib/test_grdevices.py:36: >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ >/usr/lib/python3.11/contextlib.py:137: in __enter__ > return next(self.gen) > self = <contextlib._GeneratorContextManager object at 0x7fdf9b4e0550> >rpy2/robjects/lib/grdevices.py:61: in render_to_file > device(*device_args, **device_kwargs) > current = 1 > device = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > device_args = () > device_kwargs = {'filename': '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpbo_n746p.png'} >rpy2/robjects/functions.py:208: in __call__ > return (super(SignatureTranslatedFunction, self) > __class__ = <class 'rpy2.robjects.functions.SignatureTranslatedFunction'> > args = () > k = 'filename' > kwargs = {'filename': '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpbo_n746p.png'} > prm_translate = OrderedDict([('filename', 'filename'), > ('width', 'width'), > ('height', 'height'), > ('units', 'units'), > ('pointsize', 'pointsize'), > ('bg', 'bg'), > ('res', 'res'), > ('___', '...'), > ('type', 'type'), > ('antialias', 'antialias')]) > r_k = 'filename' > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > v = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpbo_n746p.png' >rpy2/robjects/functions.py:131: in __call__ > res = super(Function, self).__call__(*new_args, **new_kwargs) > __class__ = <class 'rpy2.robjects.functions.Function'> > args = () > cv = <rpy2.robjects.conversion.Converter object at 0x7fdf9b75ae90> > k = 'filename' > kwargs = {'filename': '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpbo_n746p.png'} > new_args = [] > new_kwargs = {'filename': '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpbo_n746p.png'} > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > v = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpbo_n746p.png' >rpy2/rinterface_lib/conversion.py:45: in _ > cdata = function(*args, **kwargs) > args = (<rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',),) > function = <function SexpClosure.__call__ at 0x7fdfab6ba2a0> > kwargs = {'filename': '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpbo_n746p.png'} >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',), args = () >kwargs = {'filename': '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpbo_n746p.png'}, error_occured = <cdata 'int *' owning 4 bytes> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b4e0cd0>, call_r = <cdata 'struct SEXPREC *' 0x55be0eb55aa8> >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4], res = <cdata 'struct SEXPREC *' NULL> > > @_cdata_res_to_rinterface > def __call__(self, *args, **kwargs) -> Sexp: > error_occured = _rinterface.ffi.new('int *', 0) > with memorymanagement.rmemory() as rmemory: > call_r = rmemory.protect( > _rinterface.build_rcall(self.__sexp__._cdata, args, > kwargs.items())) > call_context = evaluation_context.get() > res = rmemory.protect( > openrlib.rlib.R_tryEval( > call_r, > call_context.__sexp__._cdata, > error_occured) > ) > if error_occured[0]: >> raise embedded.RRuntimeError(_rinterface._geterrmessage()) >E rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >E X11 is not available > >args = () >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4] >call_r = <cdata 'struct SEXPREC *' 0x55be0eb55aa8> >error_occured = <cdata 'int *' owning 4 bytes> >kwargs = {'filename': '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpbo_n746p.png'} >res = <cdata 'struct SEXPREC *' NULL> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9b4e0cd0> >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > >rpy2/rinterface.py:873: RRuntimeError >-------------------------------------------------------------------------------------- Captured log call --------------------------------------------------------------------------------------- >WARNING rpy2.rinterface_lib.callbacks:callbacks.py:124 R[write to console]: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : > X11 is not available >___________________________________________________________________________________ test_rendertobytes_plot ____________________________________________________________________________________ > > def test_rendertobytes_plot(): >> with grdevices.render_to_bytesio(grdevices.png) as b: > > >rpy2/tests/robjects/lib/test_grdevices.py:43: >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ >/usr/lib/python3.11/contextlib.py:137: in __enter__ > return next(self.gen) > self = <contextlib._GeneratorContextManager object at 0x7fdf9af88c10> >rpy2/robjects/lib/grdevices.py:82: in render_to_bytesio > device(fn, *device_args, **device_kwargs) > b = <_io.BytesIO object at 0x7fdfa0c66c00> > current = 1 > device = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > device_args = () > device_kwargs = {} > fn = '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpggux4xun' >rpy2/robjects/functions.py:208: in __call__ > return (super(SignatureTranslatedFunction, self) > __class__ = <class 'rpy2.robjects.functions.SignatureTranslatedFunction'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpggux4xun',) > kwargs = {} > prm_translate = OrderedDict([('filename', 'filename'), > ('width', 'width'), > ('height', 'height'), > ('units', 'units'), > ('pointsize', 'pointsize'), > ('bg', 'bg'), > ('res', 'res'), > ('___', '...'), > ('type', 'type'), > ('antialias', 'antialias')]) > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/robjects/functions.py:131: in __call__ > res = super(Function, self).__call__(*new_args, **new_kwargs) > __class__ = <class 'rpy2.robjects.functions.Function'> > args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpggux4xun',) > cv = <rpy2.robjects.conversion.Converter object at 0x7fdf9b75ae90> > kwargs = {} > new_args = ['/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpggux4xun'] > new_kwargs = {} > self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) >rpy2/rinterface_lib/conversion.py:45: in _ > cdata = function(*args, **kwargs) > args = (<rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',), > '/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpggux4xun') > function = <function SexpClosure.__call__ at 0x7fdfab6ba2a0> > kwargs = {} >_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',), args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpggux4xun',) >kwargs = {}, error_occured = <cdata 'int *' owning 4 bytes>, rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9af881d0> >call_r = <cdata 'struct SEXPREC *' 0x55be0eb5feb8>, call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4], res = <cdata 'struct SEXPREC *' NULL> > > @_cdata_res_to_rinterface > def __call__(self, *args, **kwargs) -> Sexp: > error_occured = _rinterface.ffi.new('int *', 0) > with memorymanagement.rmemory() as rmemory: > call_r = rmemory.protect( > _rinterface.build_rcall(self.__sexp__._cdata, args, > kwargs.items())) > call_context = evaluation_context.get() > res = rmemory.protect( > openrlib.rlib.R_tryEval( > call_r, > call_context.__sexp__._cdata, > error_occured) > ) > if error_occured[0]: >> raise embedded.RRuntimeError(_rinterface._geterrmessage()) >E rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >E X11 is not available > >args = ('/var/tmp/portage/dev-python/rpy-3.5.14/temp/tmpggux4xun',) >call_context = <rpy2.rinterface_lib.sexp.SexpEnvironment object at 0x7fdfabb62dd0> [4] >call_r = <cdata 'struct SEXPREC *' 0x55be0eb5feb8> >error_occured = <cdata 'int *' owning 4 bytes> >kwargs = {} >res = <cdata 'struct SEXPREC *' NULL> >rmemory = <rpy2.rinterface_lib.memorymanagement.ProtectionTracker object at 0x7fdf9af881d0> >self = <rpy2.robjects.functions.SignatureTranslatedFunction object at 0x7fdfa87203d0> [3] >R classes: ('function',) > >rpy2/rinterface.py:873: RRuntimeError >-------------------------------------------------------------------------------------- Captured log call --------------------------------------------------------------------------------------- >WARNING rpy2.rinterface_lib.callbacks:callbacks.py:124 R[write to console]: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : > X11 is not available >======================================================================================= warnings summary ======================================================================================= >rpy2/rinterface.py:1170 >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[IntSexpVector-value0-INTEGER_ELT-_get_integer_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[BoolSexpVector-value1-LOGICAL_ELT-_get_logical_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[FloatSexpVector-value2-REAL_ELT-_get_real_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[IntSexpVector-value0-_set_integer_elt_fallback-_get_integer_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[BoolSexpVector-value1-_set_logical_elt_fallback-_get_logical_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[FloatSexpVector-value2-_set_real_elt_fallback-_get_real_elt_fallback] > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/rinterface.py:1170: UserWarning: Environment variable "FETCHCOMMAND_SSH" redefined by R and overriding existing variable. > warnings.warn( > >rpy2/rinterface.py:1170 >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[IntSexpVector-value0-INTEGER_ELT-_get_integer_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[BoolSexpVector-value1-LOGICAL_ELT-_get_logical_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[FloatSexpVector-value2-REAL_ELT-_get_real_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[IntSexpVector-value0-_set_integer_elt_fallback-_get_integer_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[BoolSexpVector-value1-_set_logical_elt_fallback-_get_logical_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[FloatSexpVector-value2-_set_real_elt_fallback-_get_real_elt_fallback] > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/rinterface.py:1170: UserWarning: Environment variable "LD_LIBRARY_PATH" redefined by R and overriding existing variable. > warnings.warn( > >rpy2/rinterface.py:1170 > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/rinterface.py:1170: UserWarning: Environment variable "PORTAGE_COLORMAP" redefined by R and overriding existing variable. > warnings.warn( > >rpy2/rinterface.py:1170 > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/rinterface.py:1170: UserWarning: Environment variable "PORTAGE_REPOSITORIES" redefined by R and overriding existing variable. > warnings.warn( > >rpy2/rinterface.py:1170 >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[IntSexpVector-value0-INTEGER_ELT-_get_integer_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[BoolSexpVector-value1-LOGICAL_ELT-_get_logical_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[FloatSexpVector-value2-REAL_ELT-_get_real_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[IntSexpVector-value0-_set_integer_elt_fallback-_get_integer_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[BoolSexpVector-value1-_set_logical_elt_fallback-_get_logical_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[FloatSexpVector-value2-_set_real_elt_fallback-_get_real_elt_fallback] > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/rinterface.py:1170: UserWarning: Environment variable "RESUMECOMMAND_SSH" redefined by R and overriding existing variable. > warnings.warn( > >rpy2/rinterface.py:1170 > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/rinterface.py:1170: UserWarning: Environment variable "lf_filesep" redefined by R and overriding existing variable. > warnings.warn( > >rpy2/rinterface.py:1170 > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/rinterface.py:1170: UserWarning: Environment variable "lf_ifs" redefined by R and overriding existing variable. > warnings.warn( > >rpy2/rinterface.py:1170 >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[IntSexpVector-value0-INTEGER_ELT-_get_integer_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[BoolSexpVector-value1-LOGICAL_ELT-_get_logical_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_get_vec_elt_fallback[FloatSexpVector-value2-REAL_ELT-_get_real_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[IntSexpVector-value0-_set_integer_elt_fallback-_get_integer_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[BoolSexpVector-value1-_set_logical_elt_fallback-_get_logical_elt_fallback] >rpy2/tests/rinterface/test_openrlib.py::test_set_vec_elt_fallback[FloatSexpVector-value2-_set_real_elt_fallback-_get_real_elt_fallback] > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/rinterface.py:1170: UserWarning: Environment variable "R_SESSION_TMPDIR" redefined by R and overriding existing variable. > warnings.warn( > >rpy2/tests/ipython/test_html.py: 1 warning >rpy2/tests/robjects/test_dataframe.py: 3 warnings >rpy2/tests/robjects/test_language.py: 2 warnings >rpy2/tests/robjects/test_vector.py: 6 warnings >rpy2/tests/robjects/test_vector_factor.py: 4 warnings > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/robjects/conversion.py:28: DeprecationWarning: The use of rpy2py in module rpy2.robjects.conversion is deprecated. Use rpy2.robjects.conversion.get_conversion() instead of rpy2.robjects.conversion.converter. > warnings.warn( > >rpy2/tests/robjects/test_language.py::test_eval > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/robjects/language.py:50: DeprecationWarning: This function is deprecated. Use evaluation_context directly. > envir = ri.get_evaluation_context() > >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::testActivate >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::testActivateTwice > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/robjects/pandas2ri.py:368: DeprecationWarning: The global conversion available with activate() is deprecated and will be removed in the next major release. Use a local converter. > warnings.warn('The global conversion available with activate() ' > >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::testActivate >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::testActivateTwice > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/robjects/numpy2ri.py:252: DeprecationWarning: The global conversion available with activate() is deprecated and will be removed in the next major release. Use a local converter. > warnings.warn('The global conversion available with activate() ' > >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int[Int32Dtype] > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/tests/robjects/test_pandas_conversions.py:137: UserWarning: Instantiating Int32Dtype without any arguments.Pass a Int32Dtype instance to silence this warning. > s = Series(range(5), > >rpy2/tests/robjects/test_pandas_conversions.py::TestPandasConversions::test_series_int[Int64Dtype] > /var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14/rpy2/tests/robjects/test_pandas_conversions.py:137: UserWarning: Instantiating Int64Dtype without any arguments.Pass a Int64Dtype instance to silence this warning. > s = Series(range(5), > >-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html >=================================================================================== short test summary info ==================================================================================== >SKIPPED [1] rpy2/tests/ipython/test_ggplot.py:15: The R package "rlang" is not installed. >SKIPPED [1] rpy2/tests/ipython/test_rmagic.py:212: numpy not installed >SKIPPED [1] rpy2/tests/ipython/test_rmagic.py:457: R package "Cairo" not installed >SKIPPED [1] rpy2/tests/ipython/test_rmagic.py:487: Test for X11 skipped. >SKIPPED [1] rpy2/tests/rinterface/test_callbacks.py:334: WIP (should be run from worker process). >SKIPPED [1] rpy2/tests/rinterface/test_embedded_r.py:55: Spawned process seems to share initialization state with parent. >SKIPPED [1] rpy2/tests/rinterface/test_endr.py:6: This test should be run independently of other tests. >SKIPPED [1] rpy2/tests/rinterface/test_externalptr.py:42: WIP >SKIPPED [1] rpy2/tests/rinterface/test_externalptr.py:52: WIP >SKIPPED [1] rpy2/tests/rinterface/test_na.py:34: Python changed the behavior for int-inheriting objects. >SKIPPED [1] rpy2/tests/rinterface/test_noinitialization.py:7: Can only be tested before R is initialized. >SKIPPED [1] rpy2/tests/rinterface/test_noinitialization.py:20: Can only be tested before R is initialized. >SKIPPED [1] rpy2/tests/rinterface/test_noinitialization.py:26: Can only be tested before R is initialized. >SKIPPED [1] rpy2/tests/rinterface/test_noinitialization.py:32: Can only be tested before R is initialized. >SKIPPED [1] rpy2/tests/rinterface/test_threading.py:19: Can only be tested before R is initialized. >SKIPPED [1] rpy2/tests/rinterface/test_threading.py:28: Can only be tested before R is initialized. >SKIPPED [1] rpy2/tests/rinterface/test_vector_int.py:30: WIP >SKIPPED [1] rpy2/tests/rinterface/test_vector_numpy.py:45: WIP >SKIPPED [1] rpy2/tests/robjects/lib/test_dbplyr.py:18: The R package "dbplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:20: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:25: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:30: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:35: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:41: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:47: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:52: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:57: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:62: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:67: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:72: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:79: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:85: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:94: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:99: The R package "dplyr" is not installed. >SKIPPED [4] rpy2/tests/robjects/lib/test_dplyr.py:104: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:116: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_dplyr.py:123: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_ggplot2.py:20: The R package "rlang" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_ggplot2.py:24: The R package "rlang" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_ggplot2.py:28: The R package "rlang" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_ggplot2.py:32: The R package "rlang" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_ggplot2.py:36: The R package "rlang" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_ggplot2.py:40: The R package "rlang" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_ggplot2.py:44: The R package "rlang" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_ggplot2.py:48: The R package "rlang" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_ggplot2.py:52: The R package "rlang" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_ggplot2.py:58: The R package "rlang" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_ggplot2.py:69: The R package "rlang" is not installed. >SKIPPED [9] rpy2/tests/robjects/lib/test_ggplot2.py:78: The R package "rlang" is not installed. >SKIPPED [2] rpy2/tests/robjects/lib/test_ggplot2.py:95: The R package "rlang" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_tidyr.py:22: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_tidyr.py:29: The R package "dplyr" is not installed. >SKIPPED [1] rpy2/tests/robjects/lib/test_tidyr.py:38: The R package "dplyr" is not installed. >XFAIL rpy2/tests/rinterface/test_sexp.py::test_deepcopy - WIP >XFAIL rpy2/tests/robjects/test_vector_datetime.py::test_POSIXlt_getitem - wday mismatch between R and Python (issue #523) >XPASS rpy2/tests/robjects/test_vector.py::test_nacomplex Edge case with conversion. >FAILED rpy2/tests/ipython/test_rmagic.py::test_push_localscope - KeyError: 'result' >FAILED rpy2/tests/ipython/test_rmagic.py::test_run_cell_with_error["a" + 1-rmagic.RInterpreterError] - rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >FAILED rpy2/tests/ipython/test_rmagic.py::test_run_cell_with_error["a" + -rpy2.rinterface_lib._rinterface_capi.RParsingError] - rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >FAILED rpy2/tests/ipython/test_rmagic.py::test_cell_magic - rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >FAILED rpy2/tests/ipython/test_rmagic.py::test_cell_magic_localconverter - rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >FAILED rpy2/tests/ipython/test_rmagic.py::test_rmagic_localscope - rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >FAILED rpy2/tests/ipython/test_rmagic.py::test_png_plotting_args - rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >FAILED rpy2/tests/ipython/test_rmagic.py::test_display_args - rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >FAILED rpy2/tests/robjects/lib/test_grdevices.py::test_rendertobytes_noplot - rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >FAILED rpy2/tests/robjects/lib/test_grdevices.py::test_rendertofile - rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >FAILED rpy2/tests/robjects/lib/test_grdevices.py::test_rendertobytes_plot - rpy2.rinterface_lib.embedded.RRuntimeError: Error in (function (filename = "Rplot%03d.png", width = 480, height = 480, : >======================================================== 11 failed, 781 passed, 65 skipped, 2 xfailed, 1 xpassed, 55 warnings in 14.20s ======================================================== > * ERROR: dev-python/rpy-3.5.14::gentoo failed (test phase): > * pytest failed with python3.11 > * > * Call stack: > * ebuild.sh, line 136: Called src_test > * environment, line 4221: Called distutils-r1_src_test > * environment, line 2149: Called _distutils-r1_run_foreach_impl 'python_test' > * environment, line 878: Called python_foreach_impl 'distutils-r1_run_phase' 'python_test' > * environment, line 3825: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' > * environment, line 3277: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' > * environment, line 3275: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_test' > * environment, line 1375: Called distutils-r1_run_phase 'python_test' > * environment, line 2072: Called python_test > * environment, line 4108: Called distutils-r1_python_test > * environment, line 2012: Called epytest > * environment, line 2699: Called die > * The specific snippet of code: > * "${@}" || die -n "pytest failed with ${EPYTHON}"; > * > * If you need support, post the output of `emerge --info '=dev-python/rpy-3.5.14::gentoo'`, > * the complete build log and the output of `emerge -pqv '=dev-python/rpy-3.5.14::gentoo'`. > * The complete build log is located at '/var/tmp/portage/dev-python/rpy-3.5.14/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/dev-python/rpy-3.5.14/temp/environment'. > * Working directory: '/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14' > * S: '/var/tmp/portage/dev-python/rpy-3.5.14/work/rpy2-3.5.14' > >
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