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Gentoo's Bugzilla – Attachment 881034 Details for
Bug 921101
sci-biology/t-coffee-11.00-r3 - [clang] util_lib/util_make_tree.c: error: ISO C++17 does not allow register
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sci-biology:t-coffee-11.00-r3:20231230-203538.log
sci-biology:t-coffee-11.00-r3:20231230-203538.log (text/plain), 23.51 KB, created by
Toralf Förster
on 2023-12-30 20:58:54 UTC
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Description:
sci-biology:t-coffee-11.00-r3:20231230-203538.log
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Toralf Förster
Created:
2023-12-30 20:58:54 UTC
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23.51 KB
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> * Package: sci-biology/t-coffee-11.00-r3:0 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > >>>> Unpacking source... >>>> Unpacking T-COFFEE_distribution_Version_11.00.4466924.tar.gz to /var/tmp/portage/sci-biology/t-coffee-11.00-r3/work >>>> Source unpacked in /var/tmp/portage/sci-biology/t-coffee-11.00-r3/work >>>> Preparing source in /var/tmp/portage/sci-biology/t-coffee-11.00-r3/work/T-COFFEE_distribution_Version_11.00.4466924 ... > * Applying t-coffee-11.00-mayhem.patch ... > [ ok ] > * Applying t-coffee-11.00-set_proper_dir_permissions.patch ... > [ ok ] > * Applying t-coffee-11.00-cxx11.patch ... > [ ok ] > * Applying t-coffee-11.00-gcc7.patch ... > [ ok ] > * Applying t-coffee-11.00-makefile.patch ... > [ ok ] >>>> Source prepared. > * Modern C testing: this build is using a /etc/portage/bashrc hook (2023-11-30T22:24)! > * Modern C testing: see https://wiki.gentoo.org/wiki/Modern_C_porting for more info. >>>> Configuring source in /var/tmp/portage/sci-biology/t-coffee-11.00-r3/work/T-COFFEE_distribution_Version_11.00.4466924 ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/t-coffee-11.00-r3/work/T-COFFEE_distribution_Version_11.00.4466924 ... >make -j4 -C t_coffee_source t_coffee >make: Entering directory '/var/tmp/portage/sci-biology/t-coffee-11.00-r3/work/T-COFFEE_distribution_Version_11.00.4466924/t_coffee_source' >clang++ -O2 -pipe -march=native -fno-diagnostics-color -Wno-write-strings -Wno-unused-result -I. -MD -MF util_lib/util_constraints_list.deps -c -o util_lib/util_constraints_list.o util_lib/util_constraints_list.c >clang++ -O2 -pipe -march=native -fno-diagnostics-color -Wno-write-strings -Wno-unused-result -I. -MD -MF util_lib/util_job_handling.deps -c -o util_lib/util_job_handling.o util_lib/util_job_handling.c >clang++ -O2 -pipe -march=native -fno-diagnostics-color -Wno-write-strings -Wno-unused-result -I. -MD -MF util_lib/util_dps.deps -c -o util_lib/util_dps.o util_lib/util_dps.c >clang++ -O2 -pipe -march=native -fno-diagnostics-color -Wno-write-strings -Wno-unused-result -I. -MD -MF util_lib/util_domain_constraints_list.deps -c -o util_lib/util_domain_constraints_list.o util_lib/util_domain_constraints_list.c >clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] >clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] >clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] >clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] >In file included from util_lib/util_job_handling.c:34: >In file included from ./util_lib_header.h:30: >./util_lib/util.h:54:1: warning: '/*' within block comment [-Wcomment] > 54 | /* */ > | ^ >In file included from util_lib/util_dps.c:34: >In file included from ./util_lib_header.h:30: >./util_lib/util.h:54:1: warning: '/*' within block comment [-Wcomment] > 54 | /* */ > | ^ >In file included from util_lib/util_domain_constraints_list.c:34: >In file included from ./util_lib_header.h:30: >./util_lib/util.h:54:1: warning: '/*' within block comment [-Wcomment] > 54 | /* */ > | ^ >util_lib/util_domain_constraints_list.c:52:11: warning: using the result of an > assignment as a condition without parentheses [-Wparentheses] > 52 | while (e=extract_entry (CL)) > | ~^~~~~~~~~~~~~~~~~~~ >util_lib/util_domain_constraints_list.c:52:11: note: place parentheses around > the assignment to silence this warning > 52 | while (e=extract_entry (CL)) > | ^ > | ( ) >util_lib/util_domain_constraints_list.c:52:11: note: use '==' to turn this > assignment into an equality comparison > 52 | while (e=extract_entry (CL)) > | ^ > | == >In file included from util_lib/util_constraints_list.c:38: >In file included from ./util_lib_header.h:30: >./util_lib/util.h:54:1: warning: '/*' within block comment [-Wcomment] > 54 | /* */ > | ^ >1 warning generated. >clang++ -O2 -pipe -march=native -fno-diagnostics-color -Wno-write-strings -Wno-unused-result -I. -MD -MF util_lib/util_analyse_constraints_list.deps -c -o util_lib/util_analyse_constraints_list.o util_lib/util_analyse_constraints_list.c >clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] >util_lib/util_constraints_list.c:855:119: warning: address of array > 'method->executable2' will always evaluate to 'true' > [-Wpointer-bool-conversion] > 855 | ...vs %s], proba_pair will be used instead",(method->executable2)?method->e... > | ~~~~~~~~^~~~~~~~~~~ ~ >util_lib/util_constraints_list.c:1249:31: warning: address of array > 'm->executable2' will always evaluate to 'true' > [-Wpointer-bool-conversion] > 1249 | if ( !m-> executable && ! m->executable2)return NULL; > | ~ ~~~^~~~~~~~~~~ >util_lib/util_constraints_list.c:1249:12: warning: address of array > 'm->executable' will always evaluate to 'true' [-Wpointer-bool-conversion] > 1249 | if ( !m-> executable && ! m->executable2)return NULL; > | ~~~~~^~~~~~~~~~ >util_lib/util_constraints_list.c:1263:9: warning: address of array 'm->seq_type' > will always evaluate to 'true' [-Wpointer-bool-conversion] > 1263 | if (m->seq_type)fprintf (fp, "SEQ_TYPE %s\n", m->seq_type); > | ~~ ~~~^~~~~~~~ >util_lib/util_constraints_list.c:1312:1: warning: non-void function does not > return a value [-Wreturn-type] > 1312 | } > | ^ >2 warnings generated. >1 warning generated. >util_lib/util_constraints_list.c:2225:79: warning: data argument not used by > format string [-Wformat-extra-args] > 2225 | ...( local_stderr, "\n\t--- Process Method/Library/Aln %s", fname[a], ns); > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ >clang++ -O2 -pipe -march=native -fno-diagnostics-color -Wno-write-strings -Wno-unused-result -I. -MD -MF util_lib/util_aln_analyze.deps -c -o util_lib/util_aln_analyze.o util_lib/util_aln_analyze.c >clang++ -O2 -pipe -march=native -fno-diagnostics-color -Wno-write-strings -Wno-unused-result -I. -MD -MF util_lib/util_declare.deps -c -o util_lib/util_declare.o util_lib/util_declare.c >util_lib/util_constraints_list.c:2852:71: warning: data argument not used by > format string [-Wformat-extra-args] > 2852 | ...x=sscanf (buf, "%s %d %d %d %d %d",arg, &length, &r1,&r2,&we,&cons,&misc); > | ~~~~~~~~~~~~~~~~~~~ ^ >clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] >clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] >util_lib/util_constraints_list.c:5107:175: warning: address of array > 'NCL->dp_mode' will always evaluate to 'true' [-Wpointer-bool-conversion] > 5107 | ...%s][Similarity Measure: %s] \n", (NCL->dp_mode)?NCL->dp_mode:"NO_DP",mod... > | ~~~~~^~~~~~~ ~ >In file included from util_lib/util_analyse_constraints_list.c:34: >In file included from ./util_lib_header.h:30: >./util_lib/util.h:54:1: warning: '/*' within block comment [-Wcomment] > 54 | /* */ > | ^ >In file included from util_lib/util_declare.c:38: >In file included from ./util_lib_header.h:30: >./util_lib/util.h:54:1: warning: '/*' within block comment [-Wcomment] > 54 | /* */ > | ^ >1 warning generated. >clang++ -O2 -pipe -march=native -fno-diagnostics-color -Wno-write-strings -Wno-unused-result -I. -MD -MF util_lib/hsearch.deps -c -o util_lib/hsearch.o util_lib/hsearch.c >In file included from util_lib/util_aln_analyze.c:34: >In file included from ./util_lib_header.h:30: >./util_lib/util.h:54:1: warning: '/*' within block comment [-Wcomment] > 54 | /* */ > | ^ >clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] >util_lib/util_aln_analyze.c:713:1: warning: non-void function does not return a > value [-Wreturn-type] > 713 | } > | ^ >util_lib/util_aln_analyze.c:4480:1: warning: non-void function does not return a > value [-Wreturn-type] > 4480 | } > | ^ >util_lib/util_aln_analyze.c:4914:36: warning: operator '?:' has lower precedence > than '-'; '-' will be evaluated first [-Wparentheses] > 4914 | valP=matP[p][res]-(sar=='I')?1:0; > | ~~~~~~~~~~~~~~~~~~~~~~~^ >util_lib/util_aln_analyze.c:4914:36: note: place parentheses around the '-' > expression to silence this warning > 4914 | valP=matP[p][res]-(sar=='I')?1:0; > | ^ > | ( ) >util_lib/util_aln_analyze.c:4914:36: note: place parentheses around the '?:' > expression to evaluate it first > 4914 | valP=matP[p][res]-(sar=='I')?1:0; > | ^ > | ( ) >util_lib/util_aln_analyze.c:4917:36: warning: operator '?:' has lower precedence > than '-'; '-' will be evaluated first [-Wparentheses] > 4917 | valN=matN[p][res]-(sar=='O')?1:0; > | ~~~~~~~~~~~~~~~~~~~~~~~^ >util_lib/util_aln_analyze.c:4917:36: note: place parentheses around the '-' > expression to silence this warning > 4917 | valN=matN[p][res]-(sar=='O')?1:0; > | ^ > | ( ) >util_lib/util_aln_analyze.c:4917:36: note: place parentheses around the '?:' > expression to evaluate it first > 4917 | valN=matN[p][res]-(sar=='O')?1:0; > | ^ > | ( ) >In file included from util_lib/hsearch.c:36: >In file included from ./util_lib_header.h:30: >./util_lib/util.h:54:1: warning: '/*' within block comment [-Wcomment] > 54 | /* */ > | ^ >util_lib/hsearch.c:276:1: warning: '/*' within block comment [-Wcomment] > 276 | /* */ > | ^ >2 warnings generated. >clang++ -O2 -pipe -march=native -fno-diagnostics-color -Wno-write-strings -Wno-unused-result -I. -MD -MF util_lib/random.deps -c -o util_lib/random.o util_lib/random.c >clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] >clang++ -O2 -pipe -march=native -fno-diagnostics-color -Wno-write-strings -Wno-unused-result -I. -MD -MF util_lib/util_make_tree.deps -c -o util_lib/util_make_tree.o util_lib/util_make_tree.c >1 warning generated. >clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] >clang++ -O2 -pipe -march=native -fno-diagnostics-color -Wno-write-strings -Wno-unused-result -I. -MD -MF util_lib/reformat_struc.deps -c -o util_lib/reformat_struc.o util_lib/reformat_struc.c >clang++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] >In file included from util_lib/util_make_tree.c:34: >In file included from ./util_lib_header.h:30: >./util_lib/util.h:54:1: warning: '/*' within block comment [-Wcomment] > 54 | /* */ > | ^ >util_lib/util_make_tree.c:66:1: warning: non-void function does not return a > value [-Wreturn-type] > 66 | } > | ^ >util_lib/util_make_tree.c:852:2: error: ISO C++17 does not allow 'register' > storage class specifier [-Wregister] > 852 | register int i; > | ^~~~~~~~ >In file included from util_lib/reformat_struc.c:35: >In file included from ./util_lib_header.h:30: >./util_lib/util.h:54:1: warning: '/*' within block comment [-Wcomment] > 54 | /* */ > | ^ >2 warnings and 1 error generated. >util_lib/reformat_struc.c:125:28: warning: data argument not used by format > string [-Wformat-extra-args] > 125 | fprintf (out, "ATOM ", lw[1]);//ATOM > | ~~~~~~~~ ^ >make: *** [makefile:9: util_lib/util_make_tree.o] Error 1 >make: *** Waiting for unfinished jobs.... >util_lib/reformat_struc.c:755:17: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 755 | if (d<bd && d>UNDEFINED){bd=d;ba=a;bb=b;} > | ~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:778:19: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 778 | if (d<bd && d>UNDEFINED){bd=d; ba=a; bb=b;} > | ~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:808:17: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 808 | if (d<bd && d>UNDEFINED){bd=d;ba=a;bb=b;} > | ~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:831:19: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 831 | if (d<bd && d>UNDEFINED){bd=d; ba=a; bb=b;} > | ~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:907:11: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 907 | if (d>=UNDEFINED && d<=MaxD) > | ~~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:920:25: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 920 | if (d<max && d>=UNDEFINED){dist[a][b]=cd; A=CB=NULL;} > | ~~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:951:11: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 951 | if (d>=UNDEFINED && d<=MaxD) > | ~~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:964:25: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 964 | if (d<max && d>=UNDEFINED){dist[a][b]=dist[b][a]=c... > | ~~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:989:18: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 989 | dist[a][b]=UNDEFINED; > | ~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:1013:31: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 1013 | dist[a][b]=dist[b][a]=UNDEFINED; > | ~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:1033:11: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 1033 | if ( d<=UNDEFINED || d>30)return 0; > | ~~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:1058:21: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 1058 | if (d<probe && d>UNDEFINED && d<bd){bd=d; bx=x; by=y;} > | ~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:1077:22: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 1077 | if (d<probe && d>UNDEFINED && d<bd){bd=d; bx=x;by=y;} > | ~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:1091:26: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 1091 | if (!iA || !iB) return UNDEFINED; > | ~~~~~~ ^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:1105:23: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 1105 | if (d<best_d && d>=UNDEFINED){best_d=d;} > | ~~^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:1110:25: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 1110 | if (best_d==99)return UNDEFINED; > | ~~~~~~ ^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >util_lib/reformat_struc.c:1120:12: warning: implicit conversion from 'int' to > 'float' changes value from -99999999 to -1.0E+8 > [-Wimplicit-const-int-float-conversion] > 1120 | return UNDEFINED; > | ~~~~~~ ^~~~~~~~~ >./coffee_defines.h:265:26: note: expanded from macro 'UNDEFINED' > 265 | #define UNDEFINED FORBIDEN > | ^~~~~~~~ >./coffee_defines.h:239:26: note: expanded from macro 'FORBIDEN' > 239 | #define FORBIDEN -99999999 > | ^~~~~~~~~ >9 warnings generated. >19 warnings generated. >5 warnings generated. >make: Leaving directory '/var/tmp/portage/sci-biology/t-coffee-11.00-r3/work/T-COFFEE_distribution_Version_11.00.4466924/t_coffee_source' > * ERROR: sci-biology/t-coffee-11.00-r3::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=sci-biology/t-coffee-11.00-r3::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-biology/t-coffee-11.00-r3::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-biology:t-coffee-11.00-r3:20231230-203538.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/t-coffee-11.00-r3/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/t-coffee-11.00-r3/temp/environment'. > * Working directory: '/var/tmp/portage/sci-biology/t-coffee-11.00-r3/work/T-COFFEE_distribution_Version_11.00.4466924' > * S: '/var/tmp/portage/sci-biology/t-coffee-11.00-r3/work/T-COFFEE_distribution_Version_11.00.4466924' >
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