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Gentoo's Bugzilla – Attachment 867576 Details for
Bug 912032
sci-biology/sortmerna - new package request
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sortmerna-4.3.6.ebuild
sortmerna-4.3.6.ebuild (text/plain), 1.31 KB, created by
Martin Mokrejš
on 2023-08-10 16:03:58 UTC
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Description:
sortmerna-4.3.6.ebuild
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Creator:
Martin Mokrejš
Created:
2023-08-10 16:03:58 UTC
Size:
1.31 KB
patch
obsolete
># Copyright 1999-2023 Gentoo Authors ># Distributed under the terms of the GNU General Public License v2 > >EAPI=8 > >inherit cmake flag-o-matic xdg > >DESCRIPTION="Filter away rRNA reads from input FASTQ files" >HOMEPAGE="https://github.com/sortmerna/sortmerna" > >if [[ "${PV}" != *9999 ]] ; then > SRC_URI="https://github.com/${PN}//${PN}/archive/refs/tags/v${PV/_/-}.tar.gz -> ${P}.tar.gz" > S="${WORKDIR}/${P/_/-}" > KEYWORDS="~amd64 ~x86" >else > inherit git-r3 > EGIT_REPO_URI="https://github.com/${PN}/${PN}" > [[ "${PV}" != 9999 ]] && EGIT_BRANCH="master" >fi > >LICENSE="GPL-3" >SLOT="0" >IUSE="test" > >RESTRICT="!test? ( test )" >REQUIRED_USE="" > >DEPEND="dev-libs/rocksdb" >RDEPEND="${DEPEND}" >BDEPEND="" > >src_prepare() { > if [[ "${PV}" != *_beta* ]] && [[ "${PV}" != *9999 ]] && [[ ! -f .version ]] ; then > printf '%s' "${PV}" > .version || die > fi > cmake_src_prepare >} > >src_configure() { > local mycmakeargs=( > -DWITH_TESTS="$(usex test)" > -DWITH_SYSTEM_ROCKSDB:BOOL=ON > ) > if [[ "${PV}" == *_beta* ]] ; then > mycmakeargs+=( -DOVERRIDE_VERSION="${PV/_/-}" ) > fi > cmake_src_configure >} > >pkg_postinst(){ > einfo "You may want to fetch the databases now with" > einfo "wget https://github.com/biocore/sortmerna/releases/download/v4.3.6/database.tar.gz" > einfo "mkdir rRNA_databases_v4.3.6" > einfo "tar -xvf database.tar.gz -C rRNA_databases_v4.3.6" >}
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bug 912032
: 867576