* Package: sci-libs/avogadrolibs-1.97.0:0  * Repository: gentoo  * Maintainer: sci-chemistry@gentoo.org  * USE: abi_x86_64 amd64 archive doc elibc_glibc hdf5 kernel_linux qt5 vtk  * FEATURES: ccache network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking avogadrolibs-1.97.0.tar.gz to /var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work >>> Unpacking avogadrolibs-molecules-1.0.0.tar.gz to /var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work >>> Unpacking avogadrolibs-crystals-1.0.1.tar.gz to /var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work >>> Unpacking linux64-genXrdPattern-avogadrolibs-1.97.0 to /var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work unpack linux64-genXrdPattern-avogadrolibs-1.97.0: file format not recognized. Ignoring. >>> Source unpacked in /var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work >>> Preparing source in /var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/avogadrolibs-1.97.0 ... * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/avogadrolibs-1.97.0" * Build directory (BUILD_DIR): "/var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/avogadrolibs-1.97.0_build" * Applying avogadrolibs-1.91.0_pre20180406-bundled-genxrdpattern.patch ...  [ ok ] * Applying avogadrolibs-1.95.1-tests.patch ... patching file tests/core/CMakeLists.txt Hunk #1 succeeded at 16 with fuzz 2 (offset 1 line).  [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/avogadrolibs-1.97.0 ... * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/avogadrolibs-1.97.0" * Build directory (BUILD_DIR): "/var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/avogadrolibs-1.97.0_build" cmake -C /var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/avogadrolibs-1.97.0_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DUSE_LIBARCHIVE=yes -DBUILD_DOCUMENTATION=yes -DUSE_HDF5=yes -DENABLE_TRANSLATIONS=yes -DUSE_OPENGL=yes -DUSE_QT=yes -DENABLE_TESTING=no -DUSE_VTK=yes -DUSE_PYTHON=OFF -DUSE_PROTOCALL=OFF -DUSE_MMTF=OFF -DUSE_LIBMSYM=OFF -DUSE_SPGLIB=OFF -DBUILD_GPL_PLUGINS=ON -DBUILD_STATIC_PLUGINS=ON -DOpenGL_GL_PREFERENCE=GLVND -DBUNDLED_GENXRDPATTERN=/var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/genXrdPattern -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/avogadrolibs-1.97.0_build/gentoo_toolchain.cmake /var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/avogadrolibs-1.97.0 loading initial cache file /var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/avogadrolibs-1.97.0_build/gentoo_common_config.cmake -- The C compiler identification is GNU 13.1.1 -- The CXX compiler identification is GNU 13.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/lib/ccache/bin/x86_64-pc-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/lib/ccache/bin/x86_64-pc-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Found Git: /usr/bin/git (found version "2.41.0") -- Could not use git to determine source version, using version 1.97.0 -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libpthread.a;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.a;/usr/lib64/libm.so (found version "1.14.1") found components: C -- Found OpenGL: /usr/lib64/libOpenGL.so -- Found GLEW: /usr/include -- Found PythonInterp: /usr/bin/python (found suitable version "3.11.4", minimum required is "3") -- Found MPI_C: /usr/lib64/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: C -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found GLEW: /usr/lib64/libGLEW.so -- Found OpenGL: /usr/lib64/libOpenGL.so found components: OpenGL GLX -- Found EXPAT: /usr/lib64/libexpat.so (found version "2.5.0") -- Found LZMA: /usr/lib64/liblzma.so (found version "5.4.3") -- Found LZ4: /usr/lib64/liblz4.so (found version "1.9.4") -- Found double-conversion: /usr/lib64/libdouble-conversion.so -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is "2.91.0") -- Found TIFF: /usr/lib64/libtiff.so (found version "4.5.1") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.13") -- Found PNG: /usr/lib64/libpng.so (found version "1.6.40") -- Found JPEG: /usr/lib64/libjpeg.so (found version "62") -- Found Freetype: /usr/lib64/libfreetype.so (found version "2.13.1") CMake Error at /usr/lib64/cmake/TBB/TBBTargets.cmake:42 (message): Some (but not all) targets in this export set were already defined. Targets Defined: TBB::tbb, TBB::tbbmalloc, TBB::tbbmalloc_proxy Targets not yet defined: TBB::tbbbind_2_5 Call Stack (most recent call first): /usr/lib64/cmake/TBB/TBBConfig.cmake:1 (include) /usr/lib64/cmake/vtk-9.2/FindTBB.cmake:87 (find_package) /usr/lib64/cmake/vtk-9.2/VTK-vtk-module-find-packages.cmake:2754 (find_package) /usr/lib64/cmake/vtk-9.2/vtk-config.cmake:152 (include) avogadro/vtk/CMakeLists.txt:14 (find_package) -- Configuring incomplete, errors occurred! * ERROR: sci-libs/avogadrolibs-1.97.0::gentoo failed (configure phase): * cmake failed * * Call stack: * ebuild.sh, line 136: Called src_configure * environment, line 2094: Called cmake_src_configure * environment, line 1005: Called die * The specific snippet of code: * "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; * * If you need support, post the output of `emerge --info '=sci-libs/avogadrolibs-1.97.0::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-libs/avogadrolibs-1.97.0::gentoo'`. * The complete build log is located at '/var/tmp/portage/sci-libs/avogadrolibs-1.97.0/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/avogadrolibs-1.97.0/temp/environment'. * Working directory: '/var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/avogadrolibs-1.97.0_build' * S: '/var/tmp/portage/sci-libs/avogadrolibs-1.97.0/work/avogadrolibs-1.97.0'