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Gentoo's Bugzilla – Attachment 863515 Details for
Bug 908020
sci-chemistry/votca-2022.1 fails tests (MUSL-SYSTEM)
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build.log
build.log (text/plain), 356.95 KB, created by
Agostino Sarubbo
on 2023-06-07 14:46:30 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2023-06-07 14:46:30 UTC
Size:
356.95 KB
patch
obsolete
> * Package: sci-chemistry/votca-2022.1:0 > * Repository: gentoo > * Maintainer: sci-chemistry@gentoo.org > * USE: abi_x86_64 amd64 elibc_musl gromacs kernel_linux python_single_target_python3_11 test > * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/fc29942b56930006d73f9b4d2fc4d9b25dd09164 (Wed Jun 7 13:02:12 UTC 2023) >@@@@@ END @@@@@ > > > >################## ># emerge --info: # >################## >Portage 3.0.48.1 (python 3.11.3-final-0, default/linux/amd64/17.0/musl/hardened, gcc-13, musl-1.2.4, 6.1.27-gentoo-dist x86_64) >================================================================= >System uname: Linux-6.1.27-gentoo-dist-x86_64-AMD_EPYC_7513_32-Core_Processor-with-libc >KiB Mem: 263516592 total, 62496588 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Wed, 07 Jun 2023 13:02:11 +0000 >sh bash 5.2_p15-r3 >ld GNU ld (Gentoo 2.40 p5) 2.40.0 >app-misc/pax-utils: 1.3.7::gentoo >app-shells/bash: 5.2_p15-r3::gentoo >dev-lang/perl: 5.36.1-r2::gentoo >dev-lang/python: 3.10.12::gentoo, 3.11.3::gentoo, 3.12.0_beta2::gentoo >dev-util/cmake: 3.26.4-r1::gentoo >dev-util/meson: 1.1.1::gentoo >sys-apps/baselayout: 2.13-r1::gentoo >sys-apps/openrc: 0.47.1::gentoo >sys-apps/sandbox: 2.30-r1::gentoo >sys-devel/autoconf: 2.71-r6::gentoo >sys-devel/automake: 1.16.5-r1::gentoo >sys-devel/binutils: 2.40-r5::gentoo >sys-devel/binutils-config: 5.5::gentoo >sys-devel/gcc: 13.1.1_p20230527::gentoo >sys-devel/gcc-config: 2.11::gentoo >sys-devel/libtool: 2.4.7-r1::gentoo >sys-devel/make: 4.4.1-r1::gentoo >sys-kernel/linux-headers: 6.3::gentoo (virtual/os-headers) >sys-libs/musl: 1.2.4::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > volatile: True > sync-rsync-verify-jobs: 1 > sync-rsync-extra-opts: > sync-rsync-verify-metamanifest: yes > sync-rsync-verify-max-age: 24 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* Apache-2.0" >CBUILD="x86_64-gentoo-linux-musl" >CFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >CHOST="x86_64-gentoo-linux-musl" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXXFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >DISTDIR="/var/tmp/portage/sci-chemistry/votca-2022.1/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b --backtrack=100" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" >FCFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" >INSTALL_MASK="charset.alias /usr/share/locale/locale.alias" >LANG="C.UTF8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >LEX="flex" >MAKEOPTS="-j16" >PKGDIR="/root/tbci/binpkg" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >SHELL="/bin/bash" >USE="acl amd64 bzip2 cet cli crypt debug dri elogind fortran gromacs hardened iconv ipv6 jumbo-build libtirpc native-symlinks ncurses nls nptl openmp pam pcre pie readline seccomp split-usr ssl ssp test test-rust unicode xattr xtpax zlib" ABI_X86="64" ELIBC="musl" KERNEL="linux" PYTHON_SINGLE_TARGET="python3_11" >Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS > > > > > >############################## ># emerge history (qlop -mv): # >############################## >2023-06-07T11:11:48 >>> sys-apps/hwdata-0.371 >2023-06-07T11:11:51 >>> dev-util/b2-4.9.6 >2023-06-07T11:11:54 >>> virtual/fortran-0-r1 >2023-06-07T11:12:00 >>> sci-libs/lmfit-9.0-r1 >2023-06-07T11:11:57 >>> dev-cpp/eigen-3.4.0-r1 >2023-06-07T11:12:03 >>> dev-cpp/muParser-2.3.4-r1 >2023-06-07T11:12:06 >>> sci-libs/fftw-3.3.10 >2023-06-07T11:12:09 >>> x11-libs/libpciaccess-0.17-r1 >2023-06-07T11:12:12 >>> dev-libs/boost-1.82.0-r1 >2023-06-07T11:12:15 >>> sys-apps/pciutils-3.10.0 >2023-06-07T11:12:57 >>> sys-apps/hwloc-2.9.1 >2023-06-07T11:13:07 >>> sci-chemistry/gromacs-2023.1 >2023-06-07T11:12:21 >>> sci-libs/libxc-5.1.7 >2023-06-07T11:12:18 >>> sci-libs/hdf5-1.14.1 >2023-06-07T11:12:54 >>> sci-libs/libint-2.6.0-r5 >2023-06-07T13:08:37 >>> sci-chemistry/votca-2022.1 > > > > >####################################### ># installed packages (qlist -ICvUSS): # >####################################### >acct-group/audio-0-r1:0 >acct-group/cdrom-0-r1:0 >acct-group/dialout-0-r1:0 >acct-group/disk-0-r1:0 >acct-group/floppy-0:0 >acct-group/input-0-r1:0 >acct-group/kmem-0-r1:0 >acct-group/kvm-0-r1:0 >acct-group/lp-0-r1:0 >acct-group/man-0-r1:0 >acct-group/messagebus-0-r1:0 >acct-group/portage-0:0 >acct-group/render-0-r1:0 >acct-group/root-0:0 >acct-group/sgx-0:0 >acct-group/sshd-0-r1:0 >acct-group/tape-0-r1:0 >acct-group/tty-0-r1:0 >acct-group/usb-0-r1:0 >acct-group/video-0-r1:0 >acct-user/man-1-r1:0 >acct-user/messagebus-0-r1:0 >acct-user/portage-0:0 >acct-user/sshd-0-r1:0 >app-admin/eselect-1.4.24:0 -doc -emacs -vim-syntax >app-admin/perl-cleaner-2.30-r1:0 -pkgcore >app-alternatives/awk-4:0 -busybox gawk -mawk -nawk split-usr >app-alternatives/bc-0:0 -gh gnu >app-alternatives/bzip2-1:0 -lbzip2 -pbzip2 reference split-usr >app-alternatives/cpio-0:0 gnu -libarchive split-usr >app-alternatives/gzip-0:0 -pigz reference split-usr >app-alternatives/lex-0-r1:0 flex -reflex >app-alternatives/sh-0:0 bash -busybox -dash -ksh -lksh -mksh >app-alternatives/tar-0:0 gnu -libarchive split-usr >app-alternatives/yacc-1-r2:0 bison -byacc -reference >app-arch/bzip2-1.0.8-r4:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs -verify-sig >app-arch/cpio-2.14:0 nls >app-arch/gzip-1.12-r4:0 -pic -static -verify-sig >app-arch/libarchive-3.6.2-r1:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd >app-arch/tar-1.34-r3:0 acl -minimal nls -selinux -verify-sig xattr >app-arch/unzip-6.0_p27-r1:0 bzip2 -natspec unicode >app-arch/xz-utils-5.4.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc extra-filters nls split-usr -static-libs -verify-sig >app-arch/zstd-1.5.5:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 lzma split-usr -static-libs -test zlib >app-crypt/gnupg-2.4.2:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server >app-crypt/gpgme-1.20.0:1/11.6.15.2 -common-lisp cxx debug -python python_targets_python3_10 python_targets_python3_11 -qt5 -static-libs -test -verify-sig >app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs >app-crypt/libmd-1.0.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >app-crypt/pinentry-1.2.1-r3:0 -X -caps -efl -emacs -gtk -keyring ncurses -qt5 -verify-sig -wayland >app-crypt/rhash-1.4.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug nls ssl -static-libs >app-editors/nano-7.2:0 -debug -justify -magic -minimal ncurses nls spell -static unicode >app-eselect/eselect-fontconfig-20220403:0 >app-eselect/eselect-iptables-20220320:0 >app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0 >app-eselect/eselect-pinentry-0.7.2-r1:0 >app-misc/ca-certificates-20230311.3.90:0 -cacert >app-misc/editor-wrapper-4-r1:0 >app-misc/mime-types-2.1.54:0 -nginx >app-misc/pax-utils-1.3.7:0 -caps -man -python -python_single_target_python3_10 python_single_target_python3_11 -seccomp -test >app-misc/tmux-3.3a-r1:0 debug -selinux -systemd -utempter -vim-syntax >app-portage/eix-0.36.7:0 debug -doc nls -sqlite >app-portage/elt-patches-20221210:0 >app-portage/gemato-20.4:0 gpg -pretty-log -python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 -test -tools >app-portage/gentoolkit-0.6.1-r3:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 -test >app-portage/portage-utils-0.96:0 openmp qmanifest qtegrity -static >app-shells/bash-5.2_p15-r3:0 -afs -bashlogger -examples -mem-scramble net nls -pgo -plugins readline -verify-sig >app-shells/bash-completion-2.11:0 eselect -test >app-shells/gentoo-bashcomp-20230313:0 >app-shells/push-3.4:0 >app-shells/quoter-4.2:0 >app-text/ansifilter-2.18:0 -qt5 >app-text/asciidoc-10.2.0:0 -python_single_target_pypy3 -python_single_target_python3_10 python_single_target_python3_11 >app-text/build-docbook-catalog-2.4:0 >app-text/docbook-xml-dtd-4.5-r2:4.5 >app-text/docbook-xml-dtd-4.4-r3:4.4 >app-text/docbook-xml-dtd-4.2-r3:4.2 >app-text/docbook-xml-dtd-4.1.2-r7:4.1.2 >app-text/docbook-xsl-ns-stylesheets-1.79.1:0 -ruby >app-text/docbook-xsl-stylesheets-1.79.1-r4:0 -ruby >app-text/manpager-1:0 >app-text/sgml-common-0.6.3-r7:0 >app-text/xmlto-0.0.28-r10:0 -latex text >dev-cpp/eigen-3.4.0-r1:3 -cpu_flags_arm_neon -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx -cuda debug -doc openmp -test >dev-cpp/muParser-2.3.4-r1:0 -doc openmp -test >dev-db/sqlite-3.42.0:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools >dev-lang/perl-5.36.1-r2:0/5.36 -berkdb debug -doc -gdbm ithreads -minimal -quadmath >dev-lang/python-3.12.0_beta2:3.12 -bluetooth -build debug ensurepip -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig >dev-lang/python-3.11.3:3.11 -bluetooth -build debug ensurepip -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig >dev-lang/python-3.10.12:3.10 -bluetooth -build debug ensurepip -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig xml >dev-lang/python-exec-2.4.10:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_12 -test >dev-lang/python-exec-conf-2.4.6:2 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 >dev-lang/tcl-8.6.13-r1:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug threads >dev-libs/boehm-gc-8.2.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx large -static-libs threads >dev-libs/boost-1.82.0-r1:0/1.82.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 context debug -doc -icu -lzma -mpi nls -numpy python python_targets_python3_10 python_targets_python3_11 -tools zlib -zstd >dev-libs/elfutils-0.189-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma nls -static-libs -test utils -verify-sig -zstd >dev-libs/expat-2.5.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs -test unicode >dev-libs/glib-2.76.3:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus debug elf -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr >dev-libs/gmp-6.2.1-r5:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpudetection cxx -doc -pic -static-libs >dev-libs/gobject-introspection-1.76.1:0 -doctool -gtk-doc -python_single_target_python3_10 python_single_target_python3_11 -test >dev-libs/gobject-introspection-common-1.76.1:0 >dev-libs/isl-0.24-r2:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/jsoncpp-1.9.5:0/25 -doc -test >dev-libs/libassuan-2.5.5:0 >dev-libs/libatomic_ops-7.8.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >dev-libs/libbsd-0.11.7-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig >dev-libs/libevent-2.1.12-r1:0/2.1-7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 clock-gettime debug -malloc-replacement ssl -static-libs -test -verbose-debug -verify-sig >dev-libs/libffi-3.4.4-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -exec-static-trampoline -pax-kernel -static-libs -test >dev-libs/libgcrypt-1.10.2:0/20 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_padlock -cpu_flags_x86_sha cpu_flags_x86_sse4_1 -doc getentropy -static-libs -verify-sig >dev-libs/libgpg-error-1.47:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -common-lisp nls -static-libs -test -verify-sig >dev-libs/libksba-1.6.3:0 -static-libs -verify-sig >dev-libs/libltdl-2.4.7-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/libpcre2-10.42-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode -valgrind -verify-sig zlib >dev-libs/libpipeline-1.5.7:0 -test >dev-libs/libtasn1-4.19.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test -verify-sig >dev-libs/libunistring-1.1-r1:0/5 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs >dev-libs/libuv-1.45.0:0/1 >dev-libs/libxml2-2.11.4:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -examples ftp -icu -lzma python python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 readline -static-libs -test >dev-libs/libxslt-1.1.38:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 crypt debug -examples -python python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 -static-libs >dev-libs/lzo-2.10:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples split-usr -static-libs >dev-libs/mpc-1.3.1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/mpfr-4.2.0_p9:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig >dev-libs/nettle-3.9.1:0/8-6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec cpu_flags_x86_aes cpu_flags_x86_pclmul -cpu_flags_x86_sha -doc gmp -static-libs -verify-sig >dev-libs/npth-1.6-r1:0 -test >dev-libs/openssl-3.0.9:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpu_flags_x86_sse2 -fips -ktls -rfc3779 -sctp -static-libs -test -tls-compression -vanilla -verify-sig -verify-sig -weak-ssl-ciphers >dev-libs/popt-1.19:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs 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-pkcs7 -python python_targets_python3_10 python_targets_python3_11 -static-libs tools zlib zstd >sys-apps/less-633:0 pcre >sys-apps/man-db-2.11.2:0 manpager -nls seccomp -selinux -static-libs zlib >sys-apps/miscfiles-1.5-r4:0 -minimal >sys-apps/net-tools-2.10:0 arp hostname ipv6 -nis nls -plipconfig -selinux -slattach -static >sys-apps/openrc-0.47.1:0 -audit -bash debug ncurses netifrc -newnet pam -selinux -sysv-utils unicode >sys-apps/pciutils-3.10.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dns kmod -static-libs udev zlib >sys-apps/portage-3.0.48.1:0 -apidoc -build debug -doc -gentoo-dev ipc native-extensions -python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 rsync-verify -selinux -test -test xattr >sys-apps/sandbox-2.30-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nnp >sys-apps/sed-4.9:0 acl nls -selinux -static -verify-sig >sys-apps/shadow-4.13-r3:0/4 acl -audit -bcrypt -cracklib nls pam -selinux -skey split-usr -su -verify-sig xattr >sys-apps/systemd-utils-252.9:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -boot kmod -selinux split-usr -split-usr -sysusers -test tmpfiles udev >sys-apps/sysvinit-3.07:0 -ibm -nls -selinux -static -verify-sig >sys-apps/texinfo-7.0.3:0 nls standalone -static >sys-apps/util-linux-2.38.1-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -build -caps cramfs -cryptsetup -fdformat hardlink -kill logger -magic ncurses -nls pam -python python_targets_python3_10 python_targets_python3_11 readline -rtas -selinux -slang split-usr -static-libs su suid -systemd -test -tty-helpers -udev unicode -verify-sig >sys-apps/which-2.21:0 >sys-auth/elogind-246.10-r3:0 acl -audit cgroup-hybrid debug -doc pam -policykit -selinux -test >sys-auth/pambase-20220214:0 -caps -debug elogind -gnome-keyring -homed -minimal -mktemp nullok -pam_krb5 -pam_ssh passwdqc -pwhistory -pwquality -securetty -selinux sha512 -systemd -yescrypt >sys-auth/passwdqc-2.0.2-r1:0 >sys-devel/autoconf-2.71-r6:2.71 -emacs >sys-devel/autoconf-archive-2023.02.20:0 >sys-devel/autoconf-wrapper-20221207-r1:0 >sys-devel/automake-1.16.5-r1:1.16 -test >sys-devel/automake-wrapper-20221207:0 >sys-devel/bc-1.07.1-r6:0 -libedit readline -static >sys-devel/binutils-2.40-r5:2.40 cet -doc -gold -gprofng -multitarget nls -pgo plugins -static-libs -test -vanilla -zstd >sys-devel/binutils-config-5.5:0 native-symlinks >sys-devel/bison-3.8.2-r2:0 -examples nls -static -test -verify-sig >sys-devel/flex-2.6.4-r6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static -test >sys-devel/gcc-13.1.1_p20230527:13 -ada cet -custom-cflags cxx -d -debug default-stack-clash-protection default-znow -doc -fixed-point fortran -go graphite hardened -ieee-long-double -jit -libssp lto -modula2 -multilib -nls nptl -objc -objc++ -objc-gc openmp -pch -pgo pie -sanitize ssp -systemtap -test -valgrind -vanilla -vtv -zstd >sys-devel/gcc-config-2.11:0 cc-wrappers native-symlinks >sys-devel/gettext-0.21.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl cxx -doc -emacs -git -java -java ncurses -nls openmp -static-libs -verify-sig >sys-devel/gnuconfig-20230121:0 >sys-devel/libtool-2.4.7-r1:2 -vanilla >sys-devel/m4-1.4.19-r2:0 -examples nls -verify-sig >sys-devel/make-4.4.1-r1:0 -guile nls -static -verify-sig >sys-devel/patch-2.7.6-r5:0 -static -test -verify-sig xattr >sys-fs/e2fsprogs-1.47.0-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse -nls split-usr -static-libs -test tools >sys-fs/udev-init-scripts-35:0 >sys-kernel/dracut-059-r2:0 -selinux -test >sys-kernel/gentoo-kernel-bin-6.1.32:6.1.32 initramfs -test >sys-kernel/installkernel-gentoo-7:0 -grub >sys-kernel/linux-headers-6.3:0 -headers-only >sys-libs/argp-standalone-1.5.0:0 -static-libs >sys-libs/fts-standalone-1.2.7:0 -static-libs >sys-libs/gdbm-1.23:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs -test -verify-sig >sys-libs/libcap-2.69:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam split-usr -static-libs -tools >sys-libs/libseccomp-2.5.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -experimental-loong -python python_targets_python3_10 python_targets_python3_11 -static-libs -test >sys-libs/libxcrypt-4.4.35:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 compat -headers-only split-usr -static-libs system -test >sys-libs/musl-1.2.4:0 -crypt -headers-only split-usr -verify-sig >sys-libs/ncurses-6.4_p20230401:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx debug -doc -gpm -minimal -profile split-usr -split-usr -stack-realign -static-libs -test tinfo -trace -verify-sig >sys-libs/obstack-standalone-1.2.3:0 -static-libs >sys-libs/pam-1.5.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug -filecaps -nis -selinux split-usr >sys-libs/queue-standalone-0.1-r1:0 >sys-libs/readline-8.2_p1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static-libs unicode -utils -verify-sig >sys-libs/zlib-1.2.13-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs -verify-sig >sys-process/procps-3.3.17-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode >sys-process/psmisc-23.6:0 -X -apparmor nls -selinux -test >virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/dev-manager-0-r2:0 >virtual/dist-kernel-6.1.32:0/6.1.32 >virtual/editor-0-r5:0 >virtual/fortran-0-r1:0 openmp >virtual/libc-1-r1:0 >virtual/libcrypt-2-r1:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/libelf-3-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libudev-232-r7:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd >virtual/man-0-r4:0 >virtual/openssh-0:0 ssl >virtual/os-headers-0-r2:0 >virtual/package-manager-1:0 >virtual/pager-0-r1:0 >virtual/perl-Carp-1.520.0-r2:0 >virtual/perl-CPAN-2.330.0:0 >virtual/perl-Data-Dumper-2.184.0:0 >virtual/perl-Encode-3.170.0:0 >virtual/perl-Exporter-5.770.0-r1:0 >virtual/perl-ExtUtils-MakeMaker-7.640.0:0 >virtual/perl-File-Path-2.180.0-r2:0 >virtual/perl-File-Spec-3.840.0:0 >virtual/perl-File-Temp-0.231.100:0 >virtual/perl-Getopt-Long-2.520.0-r1:0 >virtual/perl-libnet-3.140.0:0 ssl >virtual/perl-MIME-Base64-3.160.0-r1:0 >virtual/perl-parent-0.238.0-r2:0 >virtual/perl-Scalar-List-Utils-1.620.0:0 >virtual/perl-Test-Harness-3.440.0-r1:0 >virtual/pkgconfig-2-r1:0 >virtual/service-manager-1-r1:0 >virtual/ssh-0-r2:0 -minimal >virtual/tmpfiles-0-r3:0 >virtual/ttf-fonts-1-r2:0 >virtual/udev-217-r5:0 >virtual/w3m-1:0 >www-client/pybugz-0.13-r2:0 python_targets_python3_10 python_targets_python3_11 >www-client/w3m-0.5.3_p20230121:0 -X -fbcon -gdk-pixbuf -gpm -imlib l10n_ja -lynxkeymap nls -nntp ssl unicode -xface >x11-apps/xprop-1.2.6:0 >x11-apps/xset-1.2.5:0 >x11-base/xcb-proto-1.15.2:0 python_targets_python3_10 python_targets_python3_11 -python_targets_python3_12 >x11-base/xorg-proto-2023.1:0 -test >x11-libs/cairo-1.17.8:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug glib -gtk-doc -test >x11-libs/libICE-1.1.1-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/libpciaccess-0.17-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 zlib >x11-libs/libSM-1.2.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc uuid >x11-libs/libX11-1.8.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/libXau-1.0.11:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libxcb-1.15-r1:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb >x11-libs/libXdmcp-1.1.4-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXext-1.3.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXmu-1.1.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXt-1.3.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/pixman-0.42.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test >x11-libs/xtrans-1.5.0:0 -doc >x11-misc/compose-tables-1.8.5:0 >x11-misc/shared-mime-info-2.2:0 -test >x11-misc/xdg-utils-1.1.3_p20210805-r1:0 -dbus -doc -gnome > > >####################### ># build.log # >####################### > * Using python3.11 to build >>>> Unpacking source... >>>> Unpacking votca-2022.1.tar.gz to /var/tmp/portage/sci-chemistry/votca-2022.1/work >>>> Source unpacked in /var/tmp/portage/sci-chemistry/votca-2022.1/work >>>> Preparing source in /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1 ... > * Fixing shebang in ./xtp/share/benchmark/xtp_benchmark.in. > * Fixing shebang in ./xtp/scripts/xtp_update_mapfile.in. > * Fixing shebang in ./xtp/scripts/xtp_qmmm2qm.in. > * Fixing shebang in ./xtp/scripts/xtp_modify_jobfile.in. > * Fixing shebang in ./xtp/scripts/xtp_basisset.in. > * Fixing shebang in ./xtp/scripts/xtp_autogen_mapping.in. > * Fixing shebang in ./xtp-tutorials/GROMACS/KMC_Methane/change_energy.py. > * Fixing shebang in ./tools/scripts/votca_help2doc.in. > * Fixing shebang in ./tools/scripts/votca_compare.in. > * Fixing shebang in ./share/doc/extract_xml_metadata.py. > * Fixing shebang in ./csg/share/scripts/inverse/table_smooth_at_cut_off.py. > * Fixing shebang in ./csg/share/scripts/inverse/iie.py. > * Fixing shebang in ./csg/share/scripts/inverse/cma_processor.py. > * Fixing shebang in ./csg-tutorials/spce/ibi_hoomd-blue/spce.py. > * Fixing shebang in ./csg-tutorials/spce/ibi_espresso/spce.py. > * Fixing shebang in ./csg-tutorials/LJ1-LJ2/imc/svd.py. > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build" > * Hardcoded definition(s) removed in CMakeLists.txt: > * set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build, option > * Hardcoded definition(s) removed in xtp/CMakeLists.txt: > * set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build, option > * Hardcoded definition(s) removed in tools/CMakeLists.txt: > * set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build, option > * Hardcoded definition(s) removed in csg/CMakeLists.txt: > * set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build, option >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1 ... > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build" >cmake -C /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DENABLE_TESTING=yes -DCMAKE_DISABLE_FIND_PACKAGE_GROMACS=no -DBUILD_CSGAPPS=ON -DINSTALL_RC_FILES=OFF -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/gentoo_toolchain.cmake /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1 >loading initial cache file /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/gentoo_common_config.cmake >-- The CXX compiler identification is GNU 13.1.1 >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Check for working CXX compiler: /usr/bin/x86_64-gentoo-linux-musl-g++ - skipped >-- Detecting CXX compile features >-- Detecting CXX compile features - done >-- Performing Test COMPILER_SUPPORTS-Wall >-- Performing Test COMPILER_SUPPORTS-Wall - Success >-- Performing Test COMPILER_SUPPORTS-Wextra >-- Performing Test COMPILER_SUPPORTS-Wextra - Success >-- Performing Test COMPILER_SUPPORTS-Wpedantic >-- Performing Test COMPILER_SUPPORTS-Wpedantic - Success >-- Performing Test COMPILER_SUPPORTS-Wshadow >-- Performing Test COMPILER_SUPPORTS-Wshadow - Success >-- Performing Test COMPILER_SUPPORTS-Wconversion >-- Performing Test COMPILER_SUPPORTS-Wconversion - Success >-- Performing Test COMPILER_SUPPORTS_march_native >-- Performing Test COMPILER_SUPPORTS_march_native - Success >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success >-- Found Threads: TRUE >-- Found Boost: /usr/lib/cmake/Boost-1.82.0/BoostConfig.cmake (found suitable version "1.82.0", minimum required is "1.71.0") found components: program_options filesystem system >-- Found Python: /usr/bin/python3.12 (found suitable version "3.12.0", minimum required is "3") found components: Interpreter >-- Found OpenMP_CXX: -fopenmp (found suitable version "4.5", minimum required is "4.5") >-- Found OpenMP: TRUE (found suitable version "4.5", minimum required is "4.5") >-- Found Eigen3: /usr/share/eigen3/cmake >-- Found PkgConfig: /usr/bin/x86_64-gentoo-linux-musl-pkg-config (found version "1.8.1") >-- Checking for module 'fftw3' >-- Found fftw3, version 3.3.10 >-- Found FFTW3: /usr/lib/libfftw3.so >-- Looking for C++ include cassert >-- Looking for C++ include cassert - found >-- Looking for C++ include cmath >-- Looking for C++ include cmath - found >-- Looking for C++ include fstream >-- Looking for C++ include fstream - found >-- Looking for C++ include functional >-- Looking for C++ include functional - found >-- Looking for C++ include iostream >-- Looking for C++ include iostream - found >-- Looking for C++ include limits >-- Looking for C++ include limits - found >-- Looking for C++ include list >-- Looking for C++ include list - found >-- Looking for C++ include map >-- Looking for C++ include map - found >-- Looking for C++ include ostream >-- Looking for C++ include ostream - found >-- Looking for C++ include sstream >-- Looking for C++ include sstream - found >-- Looking for C++ include stack >-- Looking for C++ include stack - found >-- Looking for C++ include stdexcept >-- Looking for C++ include stdexcept - found >-- Looking for C++ include string >-- Looking for C++ include string - found >-- Looking for C++ include vector >-- Looking for C++ include vector - found >-- Found EXPAT: /usr/lib/libexpat.so (found version "2.5.0") >-- Found Boost: /usr/lib/cmake/Boost-1.82.0/BoostConfig.cmake (found suitable version "1.82.0", minimum required is "1.71.0") found components: unit_test_framework >-- Found Python: /usr/bin/python3.12 (found suitable version "3.12.0", minimum required is "3.5") found components: Interpreter >-- Found Boost: /usr/lib/cmake/Boost-1.82.0/BoostConfig.cmake (found suitable version "1.82.0", minimum required is "1.71.0") found components: program_options filesystem system regex >-- Found Eigen3: /usr/share/eigen3/cmake >-- Found VOTCA_TOOLS: >CMake Warning at csg/CMakeLists.txt:83 (message): > Gromacs-2020 and above have no support for tabulated interactions, that are > needed for coarse-graining (see and comment on > https://gitlab.com/gromacs/gromacs/-/issues/1347) > > >-- Found GMX: /usr/bin/gmx >-- Found UnixCommands: /bin/bash >-- Looking for C++ include algorithm >-- Looking for C++ include algorithm - found >-- Looking for C++ include iomanip >-- Looking for C++ include iomanip - found >-- Looking for C++ include numeric >-- Looking for C++ include numeric - found >-- Looking for C++ include cstdlib >-- Looking for C++ include cstdlib - found >-- Found HDF5: /usr/lib/libhdf5_cpp.so;/usr/lib/libhdf5.so;/usr/lib/libz.so;/usr/lib/libdl.a;/usr/lib/libm.a (found version "1.14.1") found components: CXX >-- Found Boost: /usr/lib/cmake/Boost-1.82.0/BoostConfig.cmake (found suitable version "1.82.0", minimum required is "1.71.0") found components: unit_test_framework >-- Could NOT find LMP (missing: LMP_EXECUTABLE) >-- Found Python: /usr/bin/python3.12 (found suitable version "3.12.0", minimum required is "3") found components: Interpreter >Traceback (most recent call last): > File "<string>", line 1, in <module> >ModuleNotFoundError: No module named 'pytest' >-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) >-- Could NOT find SPHINX (missing: SPHINX_EXECUTABLE) >-- Could NOT find CLANG_FORMAT: Found unsuitable version "0.0", but required is at least "11" (found CLANG_FORMAT_EXECUTABLE-NOTFOUND) >-- The following features have been enabled: > > * ENABLE_TESTING, Enable unit tests > * INJECT_MARCH_NATIVE, Add -march=native to CXX flags > * BUILD_MANPAGES, Build manpages (disable for cross-compile) > * BUILD_CSGAPPS, Install extra app using csg > >-- The following OPTIONAL packages have been found: > > * UnixCommands > Used in testing > >-- The following RECOMMENDED packages have been found: > > * FFTW3 > Enables FFT functionality > * PkgConfig > Used to detect fftw package > * GROMACS (required version >= 2021) > Used to read/write gromacs data files > * HDF5 > Used to read h5md data files > >-- The following REQUIRED packages have been found: > > * EXPAT > Used for XML parsing > * boost_program_options (required version == 1.82.0) > * boost_atomic (required version == 1.82.0) > * boost_filesystem (required version == 1.82.0) > * boost_system (required version == 1.82.0) > * boost_regex (required version == 1.82.0) > * Eigen3 (required version >= 3.3.0) > C++ vector data structures > * Threads > Used for thread parallelization > * OpenMP > Used for thread parallelization in tools > * boost_headers (required version == 1.82.0) > * boost_unit_test_framework (required version == 1.82.0) > * Boost (required version >= 1.71.0) > Extended C++ libraries > * Python (required version >= 3) > Used to build documentation files > Used for csg scripts > Used to build documentation files > >-- The following features have been disabled: > > * BUILD_XTP, Build xtp module > * ENABLE_RPATH_INJECT, Inject rpath into executables > * BUILD_OWN_GROMACS, Build an internal version of gromacs > * BUILD_OWN_LIBINT, Build an internal version of libint > * INSTALL_RC_FILES, Install votca rc files (VOTCARC.bash etc.) > * ENABLE_VALGRIND_TESTING, Run unit tests through valgrind, too > * ENABLE_REGRESSION_TESTING, Enable regression tests > >-- The following OPTIONAL packages have not been found: > > * Doxygen > Needed to build API documentation > * CLANG_FORMAT (required version >= 11) > >-- <<< Gentoo configuration >>> >Build type Gentoo >Install path /usr >Compiler flags: >C >C++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native >Linker flags: >Executable -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >Module -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >Shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 > >-- Configuring done (9.3s) >-- Generating done (0.4s) >-- Build files have been written to: /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1 ... > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build" >ninja -v -j16 -l0 >[1/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg && /usr/bin/cmake -DTOP_SOURCE_DIR="/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1" -DGIT_EXECUTABLE="" -P /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/CMakeModules/gitversion.cmake >[2/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools && /usr/bin/cmake -DTOP_SOURCE_DIR="/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1" -DGIT_EXECUTABLE="" -P /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/CMakeModules/gitversion.cmake >[3/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/scripts && /usr/bin/cmake -DINPUT="csg_inverse.in2" -DOUTPUT="csg_inverse" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1" -P /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/CMakeModules/gitscript.cmake >[4/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts && /usr/bin/cmake -DINPUT="votca_compare.tmp.out" -DOUTPUT="votca_compare" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1" -P /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/CMakeModules/gitscript.cmake >[5/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts && /usr/bin/cmake -DINPUT="votca_help2doc.tmp.out" -DOUTPUT="votca_help2doc" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1" -P /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/CMakeModules/gitscript.cmake >[6/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/scripts && /usr/bin/cmake -DINPUT="csg_call.in2" -DOUTPUT="csg_call" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1" -P /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/CMakeModules/gitscript.cmake >[7/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/libtools/colors.cc >[8/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_compare --format groff --out votca_compare.man >[9/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --format groff --out votca_help2doc.man >[10/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/libtools/globals.cc >[11/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/edge.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/edge.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/edge.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/libtools/edge.cc >[12/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/filesystem.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/filesystem.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/filesystem.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/libtools/filesystem.cc >[13/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/libtools/akimaspline.cc >[14/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe 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-I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/edgecontainer.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/edgecontainer.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/edgecontainer.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/libtools/edgecontainer.cc >[16/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dvotca_tools_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT tools/src/libtools/CMakeFiles/votca_tools.dir/graph_bf_visitor.cc.o -MF tools/src/libtools/CMakeFiles/votca_tools.dir/graph_bf_visitor.cc.o.d -o tools/src/libtools/CMakeFiles/votca_tools.dir/graph_bf_visitor.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/libtools/graph_bf_visitor.cc >[17/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB 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tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/test_crosscorrelate.cc.o -MF tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/test_crosscorrelate.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/test_crosscorrelate.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_crosscorrelate.cc >[61/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/tools && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name votca_property --format groff --out votca_property.man >[62/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_crosscorrelate.dir/test_crosscorrelate.cc.o -o tools/src/tests/unit_test_crosscorrelate -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[63/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/test_cubicspline.cc.o -MF tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/test_cubicspline.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/test_cubicspline.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_cubicspline.cc >[64/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_edge_base.dir/test_edge_base.cc.o -MF tools/src/tests/CMakeFiles/unit_test_edge_base.dir/test_edge_base.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_edge_base.dir/test_edge_base.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_edge_base.cc >[65/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_cubicspline.dir/test_cubicspline.cc.o -o tools/src/tests/unit_test_cubicspline -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[66/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_edge_base.dir/test_edge_base.cc.o -o tools/src/tests/unit_test_edge_base -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[67/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_datacollection.dir/test_datacollection.cc.o -MF tools/src/tests/CMakeFiles/unit_test_datacollection.dir/test_datacollection.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_datacollection.dir/test_datacollection.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_datacollection.cc >[68/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/test_edgecontainer.cc.o -MF tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/test_edgecontainer.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/test_edgecontainer.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_edgecontainer.cc >[69/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_datacollection.dir/test_datacollection.cc.o -o tools/src/tests/unit_test_datacollection -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[70/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_edgecontainer.dir/test_edgecontainer.cc.o -o tools/src/tests/unit_test_edgecontainer -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[71/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_elements.dir/test_elements.cc.o -MF tools/src/tests/CMakeFiles/unit_test_elements.dir/test_elements.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_elements.dir/test_elements.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_elements.cc >[72/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_elements.dir/test_elements.cc.o -o tools/src/tests/unit_test_elements -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[73/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_name.dir/test_name.cc.o -MF tools/src/tests/CMakeFiles/unit_test_name.dir/test_name.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_name.dir/test_name.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_name.cc >[74/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_name.dir/test_name.cc.o -o tools/src/tests/unit_test_name -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[75/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/test_objectfactory.cc.o -MF tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/test_objectfactory.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/test_objectfactory.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_objectfactory.cc >[76/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_objectfactory.dir/test_objectfactory.cc.o -o tools/src/tests/unit_test_objectfactory -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[77/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_identity.dir/test_identity.cc.o -MF tools/src/tests/CMakeFiles/unit_test_identity.dir/test_identity.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_identity.dir/test_identity.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_identity.cc >[78/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_histogramnew.dir/test_histogramnew.cc.o -MF tools/src/tests/CMakeFiles/unit_test_histogramnew.dir/test_histogramnew.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_histogramnew.dir/test_histogramnew.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_histogramnew.cc >[79/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_identity.dir/test_identity.cc.o -o tools/src/tests/unit_test_identity -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[80/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_histogramnew.dir/test_histogramnew.cc.o -o tools/src/tests/unit_test_histogramnew -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[81/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/test_graphvisitor.cc.o -MF tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/test_graphvisitor.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/test_graphvisitor.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_graphvisitor.cc >[82/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_graphvisitor.dir/test_graphvisitor.cc.o -o tools/src/tests/unit_test_graphvisitor -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[83/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/test_graph_df_visitor.cc.o -MF tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/test_graph_df_visitor.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/test_graph_df_visitor.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_graph_df_visitor.cc >[84/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_graph_df_visitor.dir/test_graph_df_visitor.cc.o -o tools/src/tests/unit_test_graph_df_visitor -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[85/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/test_graph_bf_visitor.cc.o -MF tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/test_graph_bf_visitor.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/test_graph_bf_visitor.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_graph_bf_visitor.cc >[86/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/test_graphdistvisitor.cc.o -MF tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/test_graphdistvisitor.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/test_graphdistvisitor.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_graphdistvisitor.cc >[87/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_linalg.dir/test_linalg.cc.o -MF tools/src/tests/CMakeFiles/unit_test_linalg.dir/test_linalg.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_linalg.dir/test_linalg.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_linalg.cc >[88/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_graph_bf_visitor.dir/test_graph_bf_visitor.cc.o -o tools/src/tests/unit_test_graph_bf_visitor -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[89/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_graphdistvisitor.dir/test_graphdistvisitor.cc.o -o tools/src/tests/unit_test_graphdistvisitor -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[90/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_linalg.dir/test_linalg.cc.o -o tools/src/tests/unit_test_linalg -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[91/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches 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/usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[93/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DTOOLS_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe 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-I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_graph_base.dir/test_graph_base.cc.o -MF tools/src/tests/CMakeFiles/unit_test_graph_base.dir/test_graph_base.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_graph_base.dir/test_graph_base.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_graph_base.cc >[96/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_graph_base.dir/test_graph_base.cc.o -o 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-I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/test_structureparameters.cc.o -MF tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/test_structureparameters.cc.o.d -o tools/src/tests/CMakeFiles/unit_test_structureparameters.dir/test_structureparameters.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_structureparameters.cc >[98/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 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tools/src/tests/CMakeFiles/unit_test_thread.dir/test_thread.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/src/tests/test_thread.cc >[106/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 tools/src/tests/CMakeFiles/unit_test_thread.dir/test_thread.cc.o -o tools/src/tests/unit_test_thread -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_atomic.so.1.82.0 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so && : >[107/281] /usr/bin/x86_64-gentoo-linux-musl-g++ 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-I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/trajectoryreader.cc >[159/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc >/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc: In member function 'virtual void votca::csg::DLPOLYTrajectoryWriter::Open(std::string, bool)': >/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:46:35: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] > 46 | if (boost::filesystem::extension(filepath).size() == 0) { > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ >In file included from /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:23: >/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here > 29 | inline std::string extension(const path& p) > | ^~~~~~~~~ >/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:51:42: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] > 51 | } else if (boost::filesystem::extension(filepath) == ".dlpc") { > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ >/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here > 29 | inline std::string extension(const path& p) > | ^~~~~~~~~ >/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:56:42: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] > 56 | } else if (boost::filesystem::extension(filepath) == ".dlph") { > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ >/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here > 29 | inline std::string extension(const path& p) > | ^~~~~~~~~ >/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectorywriter.cc:65:34: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] > 65 | if (boost::filesystem::basename(filepath).size() == 0) { > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ >/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here > 35 | inline std::string basename(const path& p) > | ^~~~~~~~ >[160/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc >/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc: In member function 'virtual bool votca::csg::DLPOLYTrajectoryReader::Open(const std::string&)': >/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:50:35: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] > 50 | if (boost::filesystem::extension(filepath).size() == 0) { > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ >In file included from /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:24: >/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here > 29 | inline std::string extension(const path& p) > | ^~~~~~~~~ >/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:56:42: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] > 56 | } else if (boost::filesystem::extension(filepath) == ".dlpc") { > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ >/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here > 29 | inline std::string extension(const path& p) > | ^~~~~~~~~ >/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:61:42: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] > 61 | } else if (boost::filesystem::extension(filepath) == ".dlph") { > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ >/usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here > 29 | inline std::string extension(const path& p) > | ^~~~~~~~~ >/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytrajectoryreader.cc:70:34: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] > 70 | if (boost::filesystem::basename(filepath).size() == 0) { > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ >/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here > 35 | inline std::string basename(const path& p) > | ^~~~~~~~ >[161/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/groreader.cc >[162/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK 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csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/lammpsdumpreader.cc >[163/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc >/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc: In member function 'virtual bool votca::csg::DLPOLYTopologyReader::ReadTopology(std::string, votca::csg::Topology&)': >/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc:159:34: warning: 'std::string boost::filesystem::basename(const path&)' is deprecated: Use path::stem() instead [-Wdeprecated-declarations] > 159 | if (boost::filesystem::basename(filepath).size() == 0) { > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ >In file included from /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/dlpolytopologyreader.cc:25: >/usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here > 35 | inline std::string basename(const path& p) > | ^~~~~~~~ >[164/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/pdbwriter.cc >[165/281] /usr/bin/x86_64-gentoo-linux-musl-g++ 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-DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dvotca_csg_EXPORTS -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fPIC -fopenmp -MD -MT csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/h5mdtrajectoryreader.cc.o -MF csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/h5mdtrajectoryreader.cc.o.d -o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/h5mdtrajectoryreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/libcsg/modules/io/h5mdtrajectoryreader.cc >[180/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -fPIC -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -shared -Wl,-soname,libvotca_csg.so.2022 -o csg/src/libcsg/libvotca_csg.so.2022 csg/src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/beadstructure.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o 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csg/src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/topology.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/topologymap.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/trajectorywriter.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o csg/src/libcsg/CMakeFiles/votca_csg.dir/modules/io/h5mdtrajectoryreader.cc.o -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: /usr/lib/libgromacs.so.8.0.0 /usr/lib/libhdf5_cpp.so /usr/lib/libhdf5.so -lz /usr/lib/libdl.a /usr/lib/libm.a tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libboost_filesystem.so.1.82.0 /usr/lib/libboost_system.so.1.82.0 /usr/lib/libboost_regex.so.1.82.0 -lm /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a /usr/lib/libfftw3.so /usr/lib/libboost_atomic.so.1.82.0 && : >[181/281] /usr/bin/cmake -E cmake_symlink_library csg/src/libcsg/libvotca_csg.so.2022 csg/src/libcsg/libvotca_csg.so.2022 csg/src/libcsg/libvotca_csg.so && : >[182/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tools/CMakeFiles/csg_map.dir/csg_map.cc.o -o csg/src/tools/csg_map -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[183/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tools/CMakeFiles/csg_dump.dir/csg_dump.cc.o -o csg/src/tools/csg_dump -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[184/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o -o csg/src/tools/csg_property -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[185/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tools/CMakeFiles/csg_resample.dir/csg_resample.cc.o -o csg/src/tools/csg_resample -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[186/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools/csg_map --format groff --out csg_map.man >[187/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools/csg_dump --format groff --out csg_dump.man >[188/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -MF csg/src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o.d -o csg/src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tools/csg_reupdate.cc >[189/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools/csg_property --format groff --out csg_property.man >[190/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -o csg/src/tools/csg_reupdate -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[191/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools/csg_resample --format groff --out csg_resample.man >[192/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools/csg_reupdate --format groff --out csg_reupdate.man >[193/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o -MF csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o.d -o csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/csg_boltzmann/stdanalysis.cc >[194/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -MF csg/src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o.d -o csg/src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tools/csg_gmxtopol.cc >[195/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -o csg/src/tools/csg_gmxtopol -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[196/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -MF csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o.d -o csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tools/csg_stat_imc.cc >[197/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools/csg_gmxtopol --format groff --out csg_gmxtopol.man >[198/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat.cc.o csg/src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -o csg/src/tools/csg_stat -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[199/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -MF csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o.d -o csg/src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -c 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tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[202/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools/csg_dlptopol --format groff --out csg_dlptopol.man >[203/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 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-I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -MF csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o.d -o csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/csg_boltzmann/tabulatedpotential.cc >[207/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o -MF csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o.d -o csg/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/csg_boltzmann/main.cc >[208/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra 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/usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[215/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/csgapps && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name orientcorr/csg_orientcorr --format groff --out orientcorr.man >[216/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o -MF csg/src/csgapps/CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o.d -o csg/src/csgapps/CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/csgapps/part_dist/part_dist.cc >[217/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/csgapps/CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o -o csg/src/csgapps/part_dist/csg_part_dist -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[218/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/csgapps && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name part_dist/csg_part_dist --format groff --out part_dist.man >[219/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -MF csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o.d -o csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tools/csg_fmatch.cc >[220/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -o csg/src/tools/csg_fmatch -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[221/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools/csg_fmatch --format groff --out csg_fmatch.man >[222/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -MF csg/src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o.d -o csg/src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tools/csg_imc_solve.cc >[223/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -o csg/src/tools/csg_imc_solve -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[224/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools/csg_imc_solve --format groff --out csg_imc_solve.man >[225/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/test_beadtriple.cc.o -MF csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/test_beadtriple.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/test_beadtriple.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_beadtriple.cc >[226/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/test_beadmotif_base.cc.o -MF csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/test_beadmotif_base.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/test_beadmotif_base.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_beadmotif_base.cc >[227/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tests/CMakeFiles/unit_test_beadtriple.dir/test_beadtriple.cc.o -o csg/src/tests/unit_test_beadtriple -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[228/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_basebead.dir/test_basebead.cc.o -MF csg/src/tests/CMakeFiles/unit_test_basebead.dir/test_basebead.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_basebead.dir/test_basebead.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_basebead.cc >[229/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tests/CMakeFiles/unit_test_beadmotif_base.dir/test_beadmotif_base.cc.o -o csg/src/tests/unit_test_beadmotif_base -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[230/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tests/CMakeFiles/unit_test_basebead.dir/test_basebead.cc.o -o csg/src/tests/unit_test_basebead -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[231/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o -MF csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o.d -o csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/csgapps/partial_rdf/partial_rdf.cc >[232/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/radii.dir/radii/radii.cc.o -MF csg/src/csgapps/CMakeFiles/radii.dir/radii/radii.cc.o.d -o csg/src/csgapps/CMakeFiles/radii.dir/radii/radii.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/csgapps/radii/radii.cc >[233/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/csgapps/CMakeFiles/radii.dir/radii/radii.cc.o -o csg/src/csgapps/radii/csg_radii -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[234/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/csgapps && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name radii/csg_radii --format groff --out radii.man >[235/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_bead.dir/test_bead.cc.o -MF csg/src/tests/CMakeFiles/unit_test_bead.dir/test_bead.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_bead.dir/test_bead.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_bead.cc >[236/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tests/CMakeFiles/unit_test_bead.dir/test_bead.cc.o -o csg/src/tests/unit_test_bead -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[237/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o -MF csg/src/csgapps/CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o.d -o csg/src/csgapps/CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/csgapps/sphericalorder/sphericalorder.cc >[238/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/csgapps/CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o -o csg/src/csgapps/sphericalorder/csg_sphericalorder -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[239/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o -MF csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o.d -o csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/csgapps/partial_rdf/rdf_calculator.cc >[240/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/csgapps && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name sphericalorder/csg_sphericalorder --format groff --out sphericalorder.man >[241/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/csgapps/CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o -MF csg/src/csgapps/CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o.d -o csg/src/csgapps/CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/csgapps/traj_force/traj_force.cc >[242/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o csg/src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o -o csg/src/csgapps/partial_rdf/csg_partial_rdf -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[243/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/csgapps && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name partial_rdf/csg_partial_rdf --format groff --out partial_rdf.man >[244/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/csgapps/CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o -o csg/src/csgapps/traj_force/csg_traj_force -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools: csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[245/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/csgapps && /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name traj_force/csg_traj_force --format groff --out traj_force.man >[246/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/share" PATH="/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/scripts:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools:/var/tmp/portage/sci-chemistry/votca-2022.1/temp/python3.11/bin:/usr/lib/portage/python3.11/ebuild-helpers/xattr:/usr/lib/portage/python3.11/ebuild-helpers:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin" VOTCA_CSG_DEFAULTS="/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/share/xml/csg_defaults.xml" /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/scripts/csg_call --format groff --out csg_call.man >[247/281] cd /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/scripts && /usr/bin/cmake -E env VOTCASHARE="/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/share" PATH="/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/scripts:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/tools:/var/tmp/portage/sci-chemistry/votca-2022.1/temp/python3.11/bin:/usr/lib/portage/python3.11/ebuild-helpers/xattr:/usr/lib/portage/python3.11/ebuild-helpers:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin" VOTCA_CSG_DEFAULTS="/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/share/xml/csg_defaults.xml" /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/scripts/votca_help2doc --name /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/scripts/csg_inverse --format groff --out csg_inverse.man >[248/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/test_beadmotif_connector.cc.o -MF csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/test_beadmotif_connector.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/test_beadmotif_connector.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_beadmotif_connector.cc >[249/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tests/CMakeFiles/unit_test_beadmotif_connector.dir/test_beadmotif_connector.cc.o -o csg/src/tests/unit_test_beadmotif_connector -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[250/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/test_beadmotif_algorithms.cc.o -MF csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/test_beadmotif_algorithms.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/test_beadmotif_algorithms.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_beadmotif_algorithms.cc >[251/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tests/CMakeFiles/unit_test_beadmotif_algorithms.dir/test_beadmotif_algorithms.cc.o -o csg/src/tests/unit_test_beadmotif_algorithms -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[252/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/test_beadstructure_algorithms.cc.o -MF csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/test_beadstructure_algorithms.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/test_beadstructure_algorithms.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_beadstructure_algorithms.cc >[253/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tests/CMakeFiles/unit_test_beadstructure_algorithms.dir/test_beadstructure_algorithms.cc.o -o csg/src/tests/unit_test_beadstructure_algorithms 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-I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/test_beadstructure_base.cc.o -MF csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/test_beadstructure_base.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_beadstructure_base.dir/test_beadstructure_base.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_beadstructure_base.cc >[255/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed 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/usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[259/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o csg/src/tests/CMakeFiles/unit_test_bondedstatistics.dir/test_bondedstatistics.cc.o -o csg/src/tests/unit_test_bondedstatistics -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 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-I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_interaction.dir/test_interaction.cc.o -MF csg/src/tests/CMakeFiles/unit_test_interaction.dir/test_interaction.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_interaction.dir/test_interaction.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_interaction.cc >[265/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 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-I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/test_pdbreader.cc.o -MF csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/test_pdbreader.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_pdbreader.dir/test_pdbreader.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_pdbreader.cc >[267/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 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-I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/test_nblistgrid_3body.cc.o -MF csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/test_nblistgrid_3body.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/test_nblistgrid_3body.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_nblistgrid_3body.cc >[269/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/test_nblist_3body.cc.o -MF csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/test_nblist_3body.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/test_nblist_3body.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_nblist_3body.cc >[270/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tests/CMakeFiles/unit_test_nblistgrid_3body.dir/test_nblistgrid_3body.cc.o -o csg/src/tests/unit_test_nblistgrid_3body -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[271/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tests/CMakeFiles/unit_test_nblist_3body.dir/test_nblist_3body.cc.o -o csg/src/tests/unit_test_nblist_3body -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[272/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/test_lammpsdumpreaderwriter.cc.o -MF csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/test_lammpsdumpreaderwriter.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/test_lammpsdumpreaderwriter.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_lammpsdumpreaderwriter.cc >[273/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tests/CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/test_lammpsdumpreaderwriter.cc.o -o csg/src/tests/unit_test_lammpsdumpreaderwriter -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[274/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/share/template/CMakeFiles/template_serial.dir/template_serial.cc.o -MF csg/share/template/CMakeFiles/template_serial.dir/template_serial.cc.o.d -o csg/share/template/CMakeFiles/template_serial.dir/template_serial.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/share/template/template_serial.cc >[275/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_triplelist.dir/test_triplelist.cc.o -MF csg/src/tests/CMakeFiles/unit_test_triplelist.dir/test_triplelist.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_triplelist.dir/test_triplelist.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_triplelist.cc >[276/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/share/template/CMakeFiles/template_serial.dir/template_serial.cc.o -o csg/share/template/template_serial -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[277/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/tests/CMakeFiles/unit_test_triplelist.dir/test_triplelist.cc.o -o csg/src/tests/unit_test_triplelist -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[278/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o -MF csg/share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o.d -o csg/share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/share/template/template_threaded.cc >[279/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o -o csg/share/template/template_threaded -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >[280/281] /usr/bin/x86_64-gentoo-linux-musl-g++ -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_TEST_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DCSG_TEST_DATA_FOLDER=\"/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/DataFiles\" -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include -I/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/include/votca/tools -isystem /usr/include/eigen3 -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -std=c++17 -fopenmp -MD -MT csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/test_tabulatedpotential.cc.o -MF csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/test_tabulatedpotential.cc.o.d -o csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/test_tabulatedpotential.cc.o -c /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1/csg/src/tests/test_tabulatedpotential.cc >[281/281] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o csg/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o csg/src/tests/CMakeFiles/unit_test_tabulatedpotential.dir/test_tabulatedpotential.cc.o -o csg/src/tests/unit_test_tabulatedpotential -Wl,-rpath,/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/csg/src/libcsg:/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/tools/src/libtools csg/src/libcsg/libvotca_csg.so.2022 /usr/lib/libboost_unit_test_framework.so.1.82.0 tools/src/libtools/libvotca_tools.so.2022 /usr/lib/libboost_program_options.so.1.82.0 /usr/lib/libfftw3.so /usr/lib/gcc/x86_64-gentoo-linux-musl/13/libgomp.so /usr/lib/libpthread.a && : >>>> Source compiled. >>>> Test phase: sci-chemistry/votca-2022.1 > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build" >ctest -j 16 --test-load 999 >Test project /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build > Start 103: integration_Run_gmx_grompp > Start 55: integration_Run_gmx_grompp_re > Start 123: integration_Run_gmx_grompp_ppy > Start 126: integration_Run_gmx_grompp_mma > Start 50: integration_Run_csg_reupdate > Start 52: integration_Run_csg_reupdate2 > Start 59: integration_Run_csg_fmatch > Start 61: integration_Run_csg_fmatch_3body > Start 65: integration_Run_csg_map > Start 67: integration_Run_csg_map_gro > Start 69: integration_Run_csg_stat > Start 72: integration_Run_csg_stat_angular > Start 74: integration_Run_csg_stat-imc > Start 79: integration_Run_csg_imc_solve > Start 81: integration_Run_csg_imc_solve_reg > Start 85: integration_Run_csg_stat_imc_multi > 1/157 Test #55: integration_Run_gmx_grompp_re ...................... Passed 0.03 sec > Start 56: integration_Run_csg_reupdate_gmx > 2/157 Test #123: integration_Run_gmx_grompp_ppy ..................... Passed 0.03 sec > Start 89: integration_Run_csg_resample_akima > 3/157 Test #126: integration_Run_gmx_grompp_mma ..................... Passed 0.03 sec > Start 91: integration_Run_csg_resample_cubic > 4/157 Test #50: integration_Run_csg_reupdate ....................... Passed 0.03 sec > Start 93: integration_Run_csg_resample_linear > 5/157 Test #52: integration_Run_csg_reupdate2 ...................... Passed 0.03 sec > Start 95: integration_Run_csg_resample_cubicfit > 6/157 Test #65: integration_Run_csg_map ............................ Passed 0.03 sec > Start 97: integration_Run_csg_dump > 7/157 Test #59: integration_Run_csg_fmatch ......................... Passed 0.04 sec > Start 99: integration_Run_csg_dump_gro > 8/157 Test #67: integration_Run_csg_map_gro ........................ Passed 0.03 sec > Start 101: integration_Run_csg_dump_data > 9/157 Test #79: integration_Run_csg_imc_solve ...................... Passed 0.03 sec > Start 115: integration_Run_csg_property > 10/157 Test #89: integration_Run_csg_resample_akima ................. Passed 0.02 sec > Start 117: integration_Run_csg_property2 > 11/157 Test #74: integration_Run_csg_stat-imc ....................... Passed 0.03 sec > Start 119: integration_Run_csg_property3 > 12/157 Test #56: integration_Run_csg_reupdate_gmx ................... Passed 0.03 sec > Start 121: integration_Run_csg_property4 > 13/157 Test #91: integration_Run_csg_resample_cubic ................. Passed 0.02 sec > Start 124: integration_Run_csg_boltzmann_ppy > 14/157 Test #93: integration_Run_csg_resample_linear ................ Passed 0.02 sec > Start 127: integration_Run_csg_boltzmann_mma > 15/157 Test #95: integration_Run_csg_resample_cubicfit .............. Passed 0.02 sec > Start 1: integration_votca_propertyHelp > 16/157 Test #69: integration_Run_csg_stat ........................... Passed 0.05 sec > Start 2: unit_test_calculator > 17/157 Test #97: integration_Run_csg_dump ........................... Passed 0.03 sec > Start 3: unit_test_constants > 18/157 Test #99: integration_Run_csg_dump_gro ....................... Passed 0.04 sec > Start 4: unit_test_correlate > 19/157 Test #101: integration_Run_csg_dump_data ...................... Passed 0.05 sec > Start 5: unit_test_crosscorrelate > 20/157 Test #115: integration_Run_csg_property ....................... Passed 0.05 sec > Start 6: unit_test_cubicspline > 21/157 Test #117: integration_Run_csg_property2 ...................... Passed 0.06 sec > Start 7: unit_test_datacollection > 22/157 Test #121: integration_Run_csg_property4 ...................... Passed 0.06 sec > Start 8: unit_test_edge_base > 23/157 Test #1: integration_votca_propertyHelp ..................... Passed 0.05 sec > Start 9: unit_test_edgecontainer > 24/157 Test #124: integration_Run_csg_boltzmann_ppy .................. Passed 0.07 sec > Start 10: unit_test_elements > 25/157 Test #72: integration_Run_csg_stat_angular ................... Passed 0.12 sec > Start 11: unit_test_filesystem > 26/157 Test #127: integration_Run_csg_boltzmann_mma .................. Passed 0.10 sec > Start 12: unit_test_floatingpointcomparison > 27/157 Test #85: integration_Run_csg_stat_imc_multi ................. Passed 0.14 sec > Start 13: unit_test_graphalgorithm > 28/157 Test #119: integration_Run_csg_property3 ...................... Passed 0.12 sec > Start 14: unit_test_graph_base > 29/157 Test #2: unit_test_calculator ............................... Passed 0.10 sec > Start 15: unit_test_graph_bf_visitor > 30/157 Test #3: unit_test_constants ................................ Passed 0.10 sec > Start 16: unit_test_graph_df_visitor > 31/157 Test #4: unit_test_correlate ................................ Passed 0.09 sec > Start 17: unit_test_graphdistvisitor > 32/157 Test #5: unit_test_crosscorrelate ........................... Passed 0.08 sec > Start 18: unit_test_graphnode > 33/157 Test #7: unit_test_datacollection ........................... Passed 0.07 sec > Start 19: unit_test_graphvisitor > 34/157 Test #8: unit_test_edge_base ................................ Passed 0.07 sec > Start 20: unit_test_histogramnew > 35/157 Test #6: unit_test_cubicspline .............................. Passed 0.08 sec > Start 21: unit_test_identity > 36/157 Test #9: unit_test_edgecontainer ............................ Passed 0.07 sec > Start 22: unit_test_linalg > 37/157 Test #81: integration_Run_csg_imc_solve_reg .................. Passed 0.17 sec > Start 23: unit_test_name > 38/157 Test #10: unit_test_elements ................................. Passed 0.07 sec > Start 24: unit_test_objectfactory > 39/157 Test #11: unit_test_filesystem ............................... Passed 0.06 sec > Start 25: unit_test_optionshandler > 40/157 Test #12: unit_test_floatingpointcomparison .................. Passed 0.04 sec > Start 26: unit_test_property > 41/157 Test #13: unit_test_graphalgorithm ........................... Passed 0.04 sec > Start 27: unit_test_reducededge > 42/157 Test #14: unit_test_graph_base ............................... Passed 0.03 sec > Start 28: unit_test_reducedgraph > 43/157 Test #15: unit_test_graph_bf_visitor ......................... Passed 0.03 sec > Start 29: unit_test_structureparameters > 44/157 Test #16: unit_test_graph_df_visitor ......................... Passed 0.03 sec > Start 30: unit_test_table > 45/157 Test #17: unit_test_graphdistvisitor ......................... Passed 0.03 sec > Start 31: unit_test_thread > 46/157 Test #18: unit_test_graphnode ................................ Passed 0.03 sec > Start 32: unit_test_tokenizer > 47/157 Test #19: unit_test_graphvisitor ............................. Passed 0.03 sec > Start 33: unit_test_random > 48/157 Test #20: unit_test_histogramnew ............................. Passed 0.03 sec > Start 34: unit_test_akimaspline > 49/157 Test #21: unit_test_identity ................................. Passed 0.03 sec > Start 35: unit_test_linspline > 50/157 Test #22: unit_test_linalg ................................... Passed 0.03 sec > Start 36: unit_test_unitconverter > 51/157 Test #23: unit_test_name ..................................... Passed 0.03 sec > Start 37: unit_test_NDimVector > 52/157 Test #24: unit_test_objectfactory ............................ Passed 0.03 sec > Start 38: unit_test_eigenio_matrixmarket > 53/157 Test #25: unit_test_optionshandler ........................... Passed 0.03 sec > Start 39: integration_csg_reupdateHelp > 54/157 Test #26: unit_test_property ................................. Passed 0.03 sec > Start 40: integration_csg_mapHelp > 55/157 Test #27: unit_test_reducededge .............................. Passed 0.03 sec > Start 41: integration_csg_dumpHelp > 56/157 Test #28: unit_test_reducedgraph ............................. Passed 0.03 sec > Start 42: integration_csg_propertyHelp > 57/157 Test #29: unit_test_structureparameters ...................... Passed 0.03 sec > Start 43: integration_csg_resampleHelp > 58/157 Test #30: unit_test_table .................................... Passed 0.03 sec > Start 44: integration_csg_statHelp > 59/157 Test #31: unit_test_thread ................................... Passed 0.03 sec > Start 45: integration_csg_fmatchHelp > 60/157 Test #32: unit_test_tokenizer ................................ Passed 0.03 sec > Start 46: integration_csg_gmxtopolHelp > 61/157 Test #33: unit_test_random ................................... Passed 0.03 sec > Start 47: integration_csg_dlptopolHelp > 62/157 Test #34: unit_test_akimaspline .............................. Passed 0.03 sec > Start 48: integration_csg_densityHelp > 63/157 Test #35: unit_test_linspline ................................ Passed 0.03 sec > Start 49: integration_csg_imc_solveHelp > 64/157 Test #36: unit_test_unitconverter ............................ Passed 0.03 sec > Start 51: integration_Compare_csg_reupdate_output > 65/157 Test #37: unit_test_NDimVector ............................... Passed 0.03 sec > Start 53: integration_Compare_csg_reupdate_output2 > 66/157 Test #38: unit_test_eigenio_matrixmarket ..................... Passed 0.03 sec > Start 54: integration_Compare_csg_reupdate_output3 > 67/157 Test #39: integration_csg_reupdateHelp ....................... Passed 0.03 sec > Start 57: integration_Compare_csg_reupdate_gmx_output > 68/157 Test #40: integration_csg_mapHelp ............................ Passed 0.03 sec > Start 58: integration_Compare_csg_reupdate_gmx_output2 > 69/157 Test #41: integration_csg_dumpHelp ........................... Passed 0.03 sec > Start 60: integration_Compare_csg_fmatch_output > 70/157 Test #42: integration_csg_propertyHelp ....................... Passed 0.03 sec > Start 66: integration_Compare_csg_map_output > 71/157 Test #43: integration_csg_resampleHelp ....................... Passed 0.03 sec > Start 68: integration_Compare_csg_map_gro_output > 72/157 Test #44: integration_csg_statHelp ........................... Passed 0.03 sec > Start 70: integration_Compare_csg_stat_output1 > 73/157 Test #45: integration_csg_fmatchHelp ......................... Passed 0.03 sec > Start 71: integration_Compare_csg_stat_output2 > 74/157 Test #46: integration_csg_gmxtopolHelp ....................... Passed 0.03 sec > Start 73: integration_Compare_csg_stat_angular_output > 75/157 Test #47: integration_csg_dlptopolHelp ....................... Passed 0.03 sec > Start 75: integration_Compare_csg_stat-imc_output > 76/157 Test #48: integration_csg_densityHelp ........................ Passed 0.03 sec > Start 76: integration_Compare_csg_stat-imc_output_2 > 77/157 Test #49: integration_csg_imc_solveHelp ...................... Passed 0.03 sec > Start 77: integration_Compare_csg_stat-imc_output_3 > 78/157 Test #103: integration_Run_gmx_grompp ......................... Passed 0.30 sec > Start 110: integration_Run_gmx_mdrun > 79/157 Test #51: integration_Compare_csg_reupdate_output ............ Passed 0.05 sec > Start 104: integration_Run_csg_dump_gmx_tpr > 80/157 Test #53: integration_Compare_csg_reupdate_output2 ........... Passed 0.05 sec > Start 106: integration_Run_csg_dump_gmx_tpr_excl > 81/157 Test #54: integration_Compare_csg_reupdate_output3 ........... Passed 0.05 sec > Start 108: integration_Run_csg_dump_gmx_tpr_cg > 82/157 Test #57: integration_Compare_csg_reupdate_gmx_output ........ Passed 0.05 sec > Start 78: integration_Compare_csg_stat-imc_output_4 > 83/157 Test #58: integration_Compare_csg_reupdate_gmx_output2 ....... Passed 0.05 sec > Start 80: integration_Compare_csg_imc_solve_output > 84/157 Test #60: integration_Compare_csg_fmatch_output .............. Passed 0.05 sec > Start 82: integration_Compare_csg_imc_solve_reg_output_2 > 85/157 Test #70: integration_Compare_csg_stat_output1 ............... Passed 0.05 sec > Start 83: integration_Compare_csg_imc_solve_reg_output_3 > 86/157 Test #78: integration_Compare_csg_stat-imc_output_4 .......... Passed 0.01 sec > Start 84: integration_Compare_csg_imc_solve_reg_output_4 > 87/157 Test #104: integration_Run_csg_dump_gmx_tpr ................... Passed 0.02 sec > Start 86: integration_Compare_csg_stat-imc_multi_output > 88/157 Test #68: integration_Compare_csg_map_gro_output ............. Passed 0.06 sec > Start 87: integration_Compare_csg_stat-imc_multi_output_2 > 89/157 Test #71: integration_Compare_csg_stat_output2 ............... Passed 0.06 sec > Start 88: integration_Compare_csg_stat-imc_multi_output_3 > 90/157 Test #106: integration_Run_csg_dump_gmx_tpr_excl .............. Passed 0.03 sec > Start 90: integration_Compare_csg_resample_akima_output > 91/157 Test #76: integration_Compare_csg_stat-imc_output_2 .......... Passed 0.06 sec > Start 92: integration_Compare_csg_resample_cubic_output > 92/157 Test #108: integration_Run_csg_dump_gmx_tpr_cg ................ Passed 0.03 sec > Start 94: integration_Compare_csg_resample_linear_output > 93/157 Test #66: integration_Compare_csg_map_output ................. Passed 0.08 sec > Start 96: integration_Compare_csg_resample_cubicfit_output > 94/157 Test #73: integration_Compare_csg_stat_angular_output ........ Passed 0.07 sec > Start 98: integration_Compare_csg_dump_output > 95/157 Test #77: integration_Compare_csg_stat-imc_output_3 .......... Passed 0.06 sec > Start 100: integration_Compare_csg_dump_gro_output > 96/157 Test #75: integration_Compare_csg_stat-imc_output ............ Passed 0.07 sec > Start 102: integration_Compare_csg_dump_data_output > 97/157 Test #88: integration_Compare_csg_stat-imc_multi_output_3 .... Passed 0.02 sec > Start 105: integration_Compare_csg_dump_gmx_tpr_output > 98/157 Test #98: integration_Compare_csg_dump_output ................ Passed 0.01 sec > Start 107: integration_Compare_csg_dump_gmx_tpr_excl_output > 99/157 Test #100: integration_Compare_csg_dump_gro_output ............ Passed 0.01 sec > Start 109: integration_Compare_csg_dump_gmx_tpr_cg_output >100/157 Test #102: integration_Compare_csg_dump_data_output ........... Passed 0.01 sec > Start 116: integration_Compare_csg_property_output >101/157 Test #105: integration_Compare_csg_dump_gmx_tpr_output ........ Passed 0.01 sec > Start 118: integration_Compare_csg_property_output2 >102/157 Test #107: integration_Compare_csg_dump_gmx_tpr_excl_output ... Passed 0.01 sec > Start 120: integration_Compare_csg_property_output3 >103/157 Test #80: integration_Compare_csg_imc_solve_output ........... Passed 0.05 sec > Start 122: integration_Compare_csg_property_output4 >104/157 Test #109: integration_Compare_csg_dump_gmx_tpr_cg_output ..... Passed 0.01 sec > Start 125: Compare_csg_boltzmann_output_ppy >105/157 Test #83: integration_Compare_csg_imc_solve_reg_output_3 ..... Passed 0.05 sec > Start 128: Compare_csg_boltzmann_output_mma >106/157 Test #82: integration_Compare_csg_imc_solve_reg_output_2 ..... Passed 0.06 sec > Start 129: fluctuationsHelp >107/157 Test #116: integration_Compare_csg_property_output ............ Passed 0.02 sec > Start 130: orientcorrHelp >108/157 Test #118: integration_Compare_csg_property_output2 ........... Passed 0.02 sec > Start 131: part_distHelp >109/157 Test #84: integration_Compare_csg_imc_solve_reg_output_4 ..... Passed 0.06 sec > Start 132: partial_rdfHelp >110/157 Test #86: integration_Compare_csg_stat-imc_multi_output ...... Passed 0.06 sec > Start 133: radiiHelp >111/157 Test #120: integration_Compare_csg_property_output3 ........... Passed 0.02 sec > Start 134: sphericalorderHelp >112/157 Test #122: integration_Compare_csg_property_output4 ........... Passed 0.02 sec > Start 135: traj_forceHelp >113/157 Test #125: Compare_csg_boltzmann_output_ppy ................... Passed 0.02 sec > Start 136: unit_test_bead >114/157 Test #128: Compare_csg_boltzmann_output_mma ................... Passed 0.02 sec > Start 137: unit_test_beadtriple >115/157 Test #90: integration_Compare_csg_resample_akima_output ...... Passed 0.06 sec > Start 138: unit_test_basebead >116/157 Test #92: integration_Compare_csg_resample_cubic_output ...... Passed 0.06 sec > Start 139: unit_test_beadmotif_algorithms >117/157 Test #94: integration_Compare_csg_resample_linear_output ..... Passed 0.06 sec > Start 140: unit_test_beadmotif_base >118/157 Test #96: integration_Compare_csg_resample_cubicfit_output ... Passed 0.06 sec > Start 141: unit_test_beadmotif_connector >119/157 Test #129: fluctuationsHelp ................................... Passed 0.03 sec > Start 142: unit_test_beadstructure_base >120/157 Test #130: orientcorrHelp ..................................... Passed 0.03 sec > Start 143: unit_test_beadstructure_algorithms >121/157 Test #131: part_distHelp ...................................... Passed 0.03 sec > Start 144: unit_test_bondedstatistics >122/157 Test #132: partial_rdfHelp .................................... Passed 0.03 sec > Start 145: unit_test_csg_topology >123/157 Test #133: radiiHelp .......................................... Passed 0.03 sec > Start 146: unit_test_interaction >124/157 Test #134: sphericalorderHelp ................................. Passed 0.03 sec > Start 147: unit_test_lammpsdatareader >125/157 Test #135: traj_forceHelp ..................................... Passed 0.03 sec > Start 148: unit_test_lammpsdumpreaderwriter >126/157 Test #136: unit_test_bead ..................................... Passed 0.03 sec > Start 149: unit_test_nblist_3body >127/157 Test #137: unit_test_beadtriple ............................... Passed 0.03 sec > Start 150: unit_test_nblistgrid_3body >128/157 Test #138: unit_test_basebead ................................. Passed 0.03 sec > Start 151: unit_test_boundarycondition >129/157 Test #61: integration_Run_csg_fmatch_3body ...................***Exception: SegFault 0.43 sec > Start 62: integration_Compare_csg_fmatch_3body_output1 >130/157 Test #139: unit_test_beadmotif_algorithms ..................... Passed 0.04 sec > Start 63: integration_Compare_csg_fmatch_3body_output2 >131/157 Test #140: unit_test_beadmotif_base ........................... Passed 0.04 sec > Start 64: integration_Compare_csg_fmatch_3body_output3 >132/157 Test #141: unit_test_beadmotif_connector ...................... Passed 0.04 sec > Start 152: unit_test_pdbreader >133/157 Test #143: unit_test_beadstructure_algorithms ................. Passed 0.03 sec > Start 153: unit_test_tabulatedpotential >134/157 Test #144: unit_test_bondedstatistics ......................... Passed 0.03 sec > Start 154: unit_test_triplelist >135/157 Test #142: unit_test_beadstructure_base ....................... Passed 0.04 sec > Start 155: template_serialHelp >136/157 Test #145: unit_test_csg_topology ............................. Passed 0.04 sec > Start 156: template_threadedHelp >137/157 Test #146: unit_test_interaction .............................. Passed 0.04 sec > Start 157: regression_UninstallExists >138/157 Test #148: unit_test_lammpsdumpreaderwriter ................... Passed 0.03 sec >139/157 Test #149: unit_test_nblist_3body ............................. Passed 0.03 sec >140/157 Test #150: unit_test_nblistgrid_3body ......................... Passed 0.03 sec >141/157 Test #147: unit_test_lammpsdatareader ......................... Passed 0.04 sec >142/157 Test #151: unit_test_boundarycondition ........................ Passed 0.03 sec >143/157 Test #152: unit_test_pdbreader ................................ Passed 0.02 sec >144/157 Test #155: template_serialHelp ................................ Passed 0.01 sec >145/157 Test #157: regression_UninstallExists ......................... Passed 0.01 sec >146/157 Test #156: template_threadedHelp .............................. Passed 0.01 sec >147/157 Test #154: unit_test_triplelist ............................... Passed 0.02 sec >148/157 Test #87: integration_Compare_csg_stat-imc_multi_output_2 .... Passed 0.14 sec >149/157 Test #62: integration_Compare_csg_fmatch_3body_output1 .......***Failed 0.05 sec >150/157 Test #63: integration_Compare_csg_fmatch_3body_output2 .......***Failed 0.05 sec >151/157 Test #64: integration_Compare_csg_fmatch_3body_output3 .......***Failed 0.05 sec >152/157 Test #110: integration_Run_gmx_mdrun .......................... Passed 4.97 sec > Start 111: integration_Run_csg_map_gmx > Start 113: integration_Run_csg_map_gmx_xtc >153/157 Test #111: integration_Run_csg_map_gmx ........................ Passed 0.02 sec > Start 112: integration_Compare_csg_map_gmx_output >154/157 Test #113: integration_Run_csg_map_gmx_xtc .................... Passed 0.02 sec > Start 114: integration_Compare_csg_map_gmx_xtc_output >155/157 Test #112: integration_Compare_csg_map_gmx_output ............. Passed 0.05 sec >156/157 Test #114: integration_Compare_csg_map_gmx_xtc_output ......... Passed 0.05 sec >157/157 Test #153: unit_test_tabulatedpotential ....................... Passed 5.86 sec > >97% tests passed, 4 tests failed out of 157 > >Label Time Summary: >csg = 16.39 sec*proc (118 tests) >csg-tutorials = 0.01 sec*proc (1 test) >csgapps = 0.22 sec*proc (7 tests) >integration = 9.19 sec*proc (79 tests) >tools = 11.71 sec*proc (137 tests) >unit = 8.15 sec*proc (56 tests) >votca = 18.16 sec*proc (157 tests) > >Total Test time (real) = 6.34 sec > >The following tests FAILED: > 61 - integration_Run_csg_fmatch_3body (SEGFAULT) > 62 - integration_Compare_csg_fmatch_3body_output1 (Failed) > 63 - integration_Compare_csg_fmatch_3body_output2 (Failed) > 64 - integration_Compare_csg_fmatch_3body_output3 (Failed) >Errors while running CTest >Output from these tests are in: /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/Testing/Temporary/LastTest.log >Use "--rerun-failed --output-on-failure" to re-run the failed cases verbosely. > * ERROR: sci-chemistry/votca-2022.1::gentoo failed (test phase): > * Tests failed. When you file a bug, please attach the following file: > * /var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build/Testing/Temporary/LastTest.log > * > * Call stack: > * ebuild.sh, line 136: Called src_test > * environment, line 3224: Called cmake_src_test > * environment, line 1555: Called die > * The specific snippet of code: > * die "Tests failed. When you file a bug, please attach the following file: > * ${BUILD_DIR}/Testing/Temporary/LastTest.log"; > * > * If you need support, post the output of `emerge --info '=sci-chemistry/votca-2022.1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-chemistry/votca-2022.1::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-chemistry/votca-2022.1:20230607-131035.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/votca-2022.1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/votca-2022.1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1_build' > * S: '/var/tmp/portage/sci-chemistry/votca-2022.1/work/votca-2022.1' >
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