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Gentoo's Bugzilla – Attachment 855342 Details for
Bug 898534
sci-physics/lammps-20220217 fails to compile (MUSL-CLANG-SYSTEM): info.cpp:1329:27: error: function-like macro __GLIBC_PREREQ is not defined
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build.log
build.log (text/plain), 723.78 KB, created by
Agostino Sarubbo
on 2023-03-01 08:04:43 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2023-03-01 08:04:43 UTC
Size:
723.78 KB
patch
obsolete
> * Package: sci-physics/lammps-20220217:0 > * Repository: gentoo > * Maintainer: nicolasbock@gentoo.org sci-physics@gentoo.org > * USE: abi_x86_64 amd64 elibc_musl kernel_linux python_targets_python3_10 python_targets_python3_9 userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > * Please clean PYTHON_COMPAT of obsolete implementations: > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/b18e6e9ea969bcba86dcad23acf6a10da2cb8d04 (Tue Feb 28 15:02:11 UTC 2023) >@@@@@ END @@@@@ > > > >################## ># emerge --info: # >################## >Portage 3.0.45.1 (python 3.11.2-final-0, default/linux/amd64/17.0/musl/hardened, gcc-12, musl-1.2.3-r7, 5.15.85-gentoo-dist x86_64) >================================================================= >System uname: Linux-5.15.85-gentoo-dist-x86_64-AMD_EPYC_7513_32-Core_Processor-with-libc >KiB Mem: 263532996 total, 153876240 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Tue, 28 Feb 2023 15:02:10 +0000 >sh bash 5.2_p15-r2 >ld GNU ld (Gentoo 2.40 p2) 2.40.0 >app-misc/pax-utils: 1.3.7::gentoo >app-shells/bash: 5.2_p15-r2::gentoo >dev-lang/perl: 5.36.0-r2::gentoo >dev-lang/python: 3.9.16_p2::gentoo, 3.10.10_p2::gentoo, 3.11.2_p1::gentoo >dev-util/cmake: 3.25.2::gentoo >dev-util/meson: 1.0.0::gentoo >sys-apps/baselayout: 2.13-r1::gentoo >sys-apps/openrc: 0.46::gentoo >sys-apps/sandbox: 2.30-r1::gentoo >sys-devel/autoconf: 2.71-r5::gentoo >sys-devel/automake: 1.16.5::gentoo >sys-devel/binutils: 2.40-r2::gentoo >sys-devel/binutils-config: 5.5::gentoo >sys-devel/clang: 16.0.0_rc3::gentoo >sys-devel/gcc: 12.2.1_p20230121-r1::gentoo >sys-devel/gcc-config: 2.10::gentoo >sys-devel/libtool: 2.4.7-r1::gentoo >sys-devel/llvm: 16.0.0_rc3::gentoo >sys-devel/make: 4.4.1::gentoo >sys-kernel/linux-headers: 6.2::gentoo (virtual/os-headers) >sys-libs/musl: 1.2.3-r7::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > volatile: True > sync-rsync-verify-max-age: 24 > sync-rsync-extra-opts: > sync-rsync-verify-jobs: 1 > sync-rsync-verify-metamanifest: yes > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* GPL-2" >CBUILD="x86_64-gentoo-linux-musl" >CC="clang" >CFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >CHOST="x86_64-gentoo-linux-musl" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXX="clang++" >CXXFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >DISTDIR="/var/tmp/portage/sci-physics/lammps-20220217/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" >FCFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" >INSTALL_MASK="charset.alias /usr/share/locale/locale.alias" >LANG="C.UTF8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >LEX="flex" >MAKEOPTS="-j16" >PKGDIR="/root/tbci/binpkg" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >SHELL="/bin/bash" >USE="acl amd64 bzip2 cet cli crypt debug dri elogind fortran hardened iconv ipv6 jumbo-build libglvnd libtirpc native-symlinks ncurses nls nptl openmp pam pcre pie readline seccomp split-usr ssl ssp test-rust unicode xattr xtpax zlib" ABI_X86="64" ELIBC="musl" KERNEL="linux" PYTHON_TARGETS="python3_9 python3_10" USERLAND="GNU" >Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS > > > > > >############################## ># emerge history (qlop -mv): # >############################## >2023-02-28T15:12:03 >>> virtual/fortran-0-r1 >2023-02-28T15:12:03 >>> dev-cpp/eigen-3.4.0-r1 >2023-02-28T15:12:04 >>> sci-libs/fftw-3.3.10 >2023-02-28T15:12:04 >>> sci-libs/lapack-3.11 >2023-02-28T15:12:05 >>> sci-libs/hdf5-1.12.2-r5 >2023-02-28T15:12:14 >>> virtual/blas-3.8 >2023-02-28T15:12:14 >>> virtual/lapack-3.10 >2023-02-28T15:12:15 >>> sci-libs/netcdf-4.9.0 >2023-02-28T15:12:03 >>> sci-libs/voro++-0.4.6-r1 > > > > >####################################### ># installed packages (qlist -ICvUSS): # >####################################### >acct-group/audio-0-r1:0 >acct-group/cdrom-0-r1:0 >acct-group/dialout-0-r1:0 >acct-group/disk-0-r1:0 >acct-group/floppy-0:0 >acct-group/input-0-r1:0 >acct-group/kmem-0-r1:0 >acct-group/kvm-0-r1:0 >acct-group/lp-0-r1:0 >acct-group/man-0-r1:0 >acct-group/messagebus-0-r1:0 >acct-group/portage-0:0 >acct-group/render-0-r1:0 >acct-group/root-0:0 >acct-group/sgx-0:0 >acct-group/sshd-0-r1:0 >acct-group/tape-0-r1:0 >acct-group/tty-0-r1:0 >acct-group/usb-0-r1:0 >acct-group/video-0-r1:0 >acct-user/man-1-r1:0 >acct-user/messagebus-0-r1:0 >acct-user/portage-0:0 >acct-user/sshd-0-r1:0 >app-admin/eselect-1.4.21:0 -doc -emacs -vim-syntax >app-admin/perl-cleaner-2.30-r1:0 -pkgcore >app-alternatives/awk-4:0 -busybox gawk -mawk -nawk split-usr >app-alternatives/bzip2-1:0 -lbzip2 -pbzip2 reference split-usr >app-alternatives/gzip-0:0 -pigz reference split-usr >app-alternatives/lex-0-r1:0 flex -reflex >app-alternatives/sh-0:0 bash -busybox -dash -ksh -lksh -mksh >app-alternatives/tar-0:0 gnu -libarchive split-usr >app-alternatives/yacc-1-r2:0 bison -byacc -reference >app-arch/bzip2-1.0.8-r4:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs -verify-sig >app-arch/gzip-1.12-r4:0 -pic -static -verify-sig >app-arch/libarchive-3.6.1-r1:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd >app-arch/tar-1.34-r2:0 acl -minimal nls -selinux -verify-sig xattr >app-arch/unzip-6.0_p27-r1:0 bzip2 -natspec unicode >app-arch/xz-utils-5.4.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 extra-filters nls split-usr -static-libs -verify-sig >app-arch/zstd-1.5.4-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 lzma split-usr -static-libs -test zlib >app-crypt/gnupg-2.4.0:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server >app-crypt/gpgme-1.18.0-r2:1/11.6.15.1 -common-lisp cxx -python python_targets_python3_10 python_targets_python3_11 python_targets_python3_9 -qt5 -static-libs -test -verify-sig >app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs >app-crypt/libmd-1.0.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >app-crypt/pinentry-1.2.1-r1:0 -caps -efl -emacs -gnome-keyring -gtk ncurses -qt5 -verify-sig >app-crypt/rhash-1.4.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug nls ssl -static-libs >app-editors/nano-7.2:0 -debug -justify -magic -minimal ncurses nls spell -static unicode >app-eselect/eselect-fontconfig-20220403:0 >app-eselect/eselect-iptables-20220320:0 >app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0 >app-eselect/eselect-pinentry-0.7.2-r1:0 >app-misc/ca-certificates-20211016.3.88.1:0 -cacert >app-misc/editor-wrapper-4-r1:0 >app-misc/mime-types-2.1.53:0 -nginx >app-misc/pax-utils-1.3.7:0 -caps -man -python python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_9 -seccomp -test >app-misc/tmux-3.3a-r1:0 debug -selinux -systemd -utempter -vim-syntax >app-portage/eix-0.36.6:0 debug -doc nls -sqlite >app-portage/elt-patches-20221210:0 >app-portage/gemato-19.0:0 gpg -pretty-log -python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_9 -test -tools >app-portage/gentoolkit-0.6.1-r3:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_9 -test >app-portage/portage-utils-0.95:0 openmp qmanifest qtegrity -static >app-shells/bash-5.2_p15-r2:0 -afs -bashlogger -examples -mem-scramble net nls -pgo -plugins readline -verify-sig >app-shells/bash-completion-2.11:0 eselect -test >app-shells/gentoo-bashcomp-20190211-r1:0 >app-shells/push-3.4:0 >app-shells/quoter-4.2:0 >app-text/ansifilter-2.18:0 -qt5 >app-text/build-docbook-catalog-2.3-r1:0 >app-text/docbook-xml-dtd-4.5-r2:4.5 >app-text/docbook-xml-dtd-4.4-r3:4.4 >app-text/docbook-xml-dtd-4.2-r3:4.2 >app-text/docbook-xml-dtd-4.1.2-r7:4.1.2 >app-text/docbook-xsl-ns-stylesheets-1.79.1:0 -ruby >app-text/docbook-xsl-stylesheets-1.79.1-r3:0 -ruby >app-text/manpager-1:0 >app-text/sgml-common-0.6.3-r7:0 >app-text/xmlto-0.0.28-r10:0 -latex text >dev-cpp/eigen-3.4.0-r1:3 -cpu_flags_arm_neon -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx -cuda debug -doc openmp -test >dev-db/sqlite-3.41.0:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools >dev-lang/perl-5.36.0-r2:0/5.36 -berkdb debug -doc -gdbm ithreads -minimal -quadmath >dev-lang/python-3.11.2_p1:3.11 -bluetooth -build ensurepip -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig >dev-lang/python-3.10.10_p2:3.10 -bluetooth -build ensurepip -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig xml >dev-lang/python-3.9.16_p2:3.9 -bluetooth -build ensurepip -examples gdbm hardened -lto ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig xml >dev-lang/python-exec-2.4.10:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_9 -test >dev-lang/python-exec-conf-2.4.6:2 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_9 >dev-lang/tcl-8.6.13-r1:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug threads >dev-libs/boehm-gc-8.2.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx large -static-libs threads >dev-libs/elfutils-0.188:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma nls -static-libs -test utils -valgrind -verify-sig -zstd >dev-libs/expat-2.5.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs unicode >dev-libs/glib-2.74.6:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus debug elf -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr >dev-libs/gmp-6.2.1-r5:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpudetection cxx -doc -pic -static-libs >dev-libs/gobject-introspection-1.74.0:0 -doctool -gtk-doc python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_9 -test >dev-libs/gobject-introspection-common-1.74.0:0 >dev-libs/isl-0.24-r2:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/jsoncpp-1.9.5:0/25 -doc -test >dev-libs/libassuan-2.5.5:0 >dev-libs/libatomic_ops-7.6.14:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >dev-libs/libbsd-0.11.7-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig >dev-libs/libevent-2.1.12-r1:0/2.1-7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 clock-gettime debug -malloc-replacement ssl -static-libs -test -verbose-debug >dev-libs/libffi-3.4.4:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -exec-static-trampoline -pax-kernel -static-libs -test >dev-libs/libgcrypt-1.10.1-r3:0/20 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_padlock -cpu_flags_x86_sha cpu_flags_x86_sse4_1 -doc getentropy -static-libs -verify-sig >dev-libs/libgpg-error-1.46-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -common-lisp nls -static-libs -test -verify-sig >dev-libs/libksba-1.6.3:0 -static-libs -verify-sig >dev-libs/libltdl-2.4.7-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/libpcre2-10.42-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode -verify-sig zlib >dev-libs/libpipeline-1.5.7:0 -test >dev-libs/libtasn1-4.19.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test -valgrind -verify-sig >dev-libs/libunistring-1.1-r1:0/5 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs >dev-libs/libuv-1.44.2-r1:0/1 >dev-libs/libxml2-2.10.3-r1:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -examples ftp -icu -lzma python python_targets_python3_10 python_targets_python3_11 python_targets_python3_9 readline -static-libs -test >dev-libs/libxslt-1.1.37-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 crypt debug -examples -python python_targets_python3_10 python_targets_python3_11 python_targets_python3_9 -static-libs >dev-libs/lzo-2.10:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples split-usr -static-libs >dev-libs/mpc-1.3.1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/mpfr-4.2.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig >dev-libs/nettle-3.8.1:0/8-6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec cpu_flags_x86_aes cpu_flags_x86_pclmul -cpu_flags_x86_sha -doc gmp -static-libs -verify-sig >dev-libs/npth-1.6-r1:0 -test >dev-libs/openssl-3.0.8:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 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-skey split-usr -su -verify-sig xattr >sys-apps/systemd-utils-252.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -boot kmod -selinux split-usr -split-usr -sysusers -test tmpfiles udev >sys-apps/sysvinit-3.06-r1:0 -ibm -nls -selinux -static -verify-sig >sys-apps/texinfo-7.0.2:0 nls standalone -static >sys-apps/util-linux-2.38.1-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -build -caps cramfs -cryptsetup -fdformat hardlink -kill logger -magic ncurses nls pam -python python_targets_python3_10 python_targets_python3_11 python_targets_python3_9 readline -rtas -selinux -slang split-usr -static-libs su suid -systemd -test -tty-helpers -udev unicode -verify-sig >sys-apps/which-2.21:0 >sys-auth/elogind-246.10-r2:0 acl -audit cgroup-hybrid debug -doc pam -policykit -selinux -test >sys-auth/pambase-20220214:0 -caps -debug elogind -gnome-keyring -homed -minimal -mktemp nullok -pam_krb5 -pam_ssh passwdqc -pwhistory -pwquality -securetty -selinux sha512 -systemd -yescrypt >sys-auth/passwdqc-2.0.2-r1:0 >sys-devel/autoconf-2.71-r5:2.71 -emacs >sys-devel/autoconf-archive-2023.02.20:0 >sys-devel/autoconf-wrapper-20221207-r1:0 >sys-devel/automake-1.16.5:1.16 -test >sys-devel/automake-wrapper-20221207:0 >sys-devel/binutils-2.40-r2:2.40 cet -doc -gold -gprofng -multitarget nls -pgo plugins -static-libs -test -vanilla -zstd >sys-devel/binutils-config-5.5:0 native-symlinks >sys-devel/bison-3.8.2-r2:0 -examples nls -static -test -verify-sig >sys-devel/clang-16.0.0_rc3:16/16 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -doc extra -ieee-long-double llvm_targets_AArch64 llvm_targets_AMDGPU -llvm_targets_ARC llvm_targets_ARM llvm_targets_AVR llvm_targets_BPF -llvm_targets_CSKY -llvm_targets_DirectX llvm_targets_Hexagon llvm_targets_Lanai llvm_targets_LoongArch -llvm_targets_M68k llvm_targets_MSP430 llvm_targets_Mips llvm_targets_NVPTX llvm_targets_PowerPC llvm_targets_RISCV -llvm_targets_SPIRV llvm_targets_Sparc llvm_targets_SystemZ llvm_targets_VE llvm_targets_WebAssembly llvm_targets_X86 llvm_targets_XCore -llvm_targets_Xtensa pie python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_9 static-analyzer -test -test -verify-sig -xml >sys-devel/clang-common-16.0.0_rc3:0 -default-compiler-rt -default-libcxx -default-lld hardened -llvm-libunwind -stricter -verify-sig >sys-devel/clang-runtime-16.0.0_rc3:16 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 compiler-rt -libcxx openmp sanitize >sys-devel/clang-toolchain-symlinks-16-r2:16 -gcc-symlinks -multilib-symlinks native-symlinks >sys-devel/flex-2.6.4-r6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static -test >sys-devel/gcc-12.2.1_p20230121-r1:12 -ada cet -custom-cflags cxx -d -debug default-stack-clash-protection default-znow -doc -fixed-point fortran -go graphite hardened -ieee-long-double -jit -libssp lto -multilib -nls nptl -objc -objc++ -objc-gc openmp -pch -pgo pie sanitize ssp -systemtap -test -valgrind -vanilla -vtv -zstd >sys-devel/gcc-config-2.10:0 cc-wrappers native-symlinks >sys-devel/gettext-0.21.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl cxx -doc -emacs -git -java -java ncurses -nls openmp -static-libs -verify-sig >sys-devel/gnuconfig-20221007:0 >sys-devel/libtool-2.4.7-r1:2 -vanilla >sys-devel/llvm-16.0.0_rc3:16/16 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 binutils-plugin -debug -doc -doc -exegesis -libedit libffi llvm_targets_AArch64 llvm_targets_AMDGPU -llvm_targets_ARC llvm_targets_ARM llvm_targets_AVR llvm_targets_BPF -llvm_targets_CSKY -llvm_targets_DirectX llvm_targets_Hexagon llvm_targets_Lanai llvm_targets_LoongArch -llvm_targets_M68k llvm_targets_MSP430 llvm_targets_Mips llvm_targets_NVPTX llvm_targets_PowerPC llvm_targets_RISCV -llvm_targets_SPIRV llvm_targets_Sparc llvm_targets_SystemZ llvm_targets_VE llvm_targets_WebAssembly llvm_targets_X86 llvm_targets_XCore -llvm_targets_Xtensa ncurses -test -test -verify-sig -xar -xml -z3 -zstd >sys-devel/llvm-common-15.0.7:0 -verify-sig >sys-devel/llvm-toolchain-symlinks-16-r1:16 -multilib-symlinks native-symlinks >sys-devel/llvmgold-16:0 >sys-devel/m4-1.4.19-r1:0 -examples nls -verify-sig >sys-devel/make-4.4.1:0 -guile nls -static -verify-sig >sys-devel/patch-2.7.6-r5:0 -static -test -verify-sig xattr >sys-fs/e2fsprogs-1.47.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse -nls split-usr -static-libs -test tools >sys-fs/udev-init-scripts-35:0 >sys-kernel/installkernel-gentoo-6:0 -grub >sys-kernel/linux-headers-6.2:0 -headers-only >sys-libs/argp-standalone-1.5.0:0 -static-libs >sys-libs/binutils-libs-2.40-r2:0/2.40 -64-bit-bfd -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 cet -multitarget nls -static-libs >sys-libs/compiler-rt-16.0.0_rc3:16 -abi_x86_32 abi_x86_64 clang -debug -test -verify-sig >sys-libs/compiler-rt-sanitizers-16.0.0_rc3:16 -abi_x86_32 abi_x86_64 asan cfi clang -debug dfsan -gwp-asan hwasan libfuzzer lsan memprof msan -orc profile safestack scudo -shadowcallstack -test -test tsan ubsan -verify-sig xray >sys-libs/fts-standalone-1.2.7:0 -static-libs >sys-libs/gdbm-1.23:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs -test -verify-sig >sys-libs/libcap-2.67:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam split-usr -static-libs -tools >sys-libs/libomp-16.0.0_rc3:0/16 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 debug -gdb-plugin -hwloc -llvm_targets_AMDGPU -llvm_targets_NVPTX -offload -ompt python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_9 -test -verify-sig >sys-libs/libseccomp-2.5.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -experimental-loong -python python_targets_python3_10 python_targets_python3_9 -static-libs -test >sys-libs/libxcrypt-4.4.33:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 compat -headers-only split-usr -static-libs system -test >sys-libs/musl-1.2.3-r7:0 -crypt -headers-only -verify-sig >sys-libs/ncurses-6.4:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx debug -doc -gpm -minimal -profile split-usr -split-usr -stack-realign -static-libs -test tinfo -trace -verify-sig >sys-libs/obstack-standalone-1.2.3:0 -static-libs >sys-libs/pam-1.5.2-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug -filecaps -nis -selinux split-usr >sys-libs/queue-standalone-0.1-r1:0 >sys-libs/readline-8.2_p1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static-libs unicode -utils -verify-sig >sys-libs/timezone-data-2022g:0 -leaps-timezone nls -zic-slim >sys-libs/zlib-1.2.13-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs -verify-sig >sys-process/procps-3.3.17-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode >sys-process/psmisc-23.6:0 -X -apparmor nls -selinux -test >virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/blas-3.8:0 -eselect-ldso >virtual/dev-manager-0-r2:0 >virtual/editor-0-r4:0 >virtual/fortran-0-r1:0 openmp >virtual/lapack-3.10:0 -eselect-ldso >virtual/libc-1-r1:0 >virtual/libcrypt-2-r1:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/libelf-3-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libudev-232-r7:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd >virtual/man-0-r4:0 >virtual/os-headers-0-r2:0 >virtual/package-manager-1:0 >virtual/pager-0-r1:0 >virtual/perl-Carp-1.520.0-r2:0 >virtual/perl-Compress-Raw-Bzip2-2.103.0-r3:0 >virtual/perl-Compress-Raw-Zlib-2.202.0:0 >virtual/perl-CPAN-2.330.0:0 >virtual/perl-CPAN-Meta-2.150.10-r6:0 >virtual/perl-CPAN-Meta-Requirements-2.140.0-r8:0 >virtual/perl-CPAN-Meta-YAML-0.18.0-r8:0 >virtual/perl-Data-Dumper-2.184.0:0 >virtual/perl-Digest-MD5-2.580.0-r1:0 >virtual/perl-Encode-3.170.0:0 >virtual/perl-Exporter-5.770.0:0 >virtual/perl-ExtUtils-CBuilder-0.280.236-r1:0 >virtual/perl-ExtUtils-Install-2.200.0-r1:0 >virtual/perl-ExtUtils-MakeMaker-7.640.0:0 >virtual/perl-ExtUtils-Manifest-1.730.0-r1:0 >virtual/perl-ExtUtils-ParseXS-3.450.0:0 >virtual/perl-File-Path-2.180.0-r1:0 >virtual/perl-File-Spec-3.840.0:0 >virtual/perl-File-Temp-0.231.100:0 >virtual/perl-Getopt-Long-2.520.0-r1:0 >virtual/perl-IO-1.500.0:0 >virtual/perl-IO-Compress-2.106.0:0 >virtual/perl-IO-Socket-IP-0.410.0-r1:0 >virtual/perl-JSON-PP-4.70.0:0 >virtual/perl-libnet-3.140.0:0 ssl >virtual/perl-MIME-Base64-3.160.0-r1:0 >virtual/perl-Module-Metadata-1.0.37-r2:0 >virtual/perl-parent-0.238.0-r2:0 >virtual/perl-Parse-CPAN-Meta-2.150.10-r6:0 >virtual/perl-Perl-OSType-1.10.0-r6:0 >virtual/perl-podlators-4.140.0-r3:0 >virtual/perl-Scalar-List-Utils-1.620.0:0 >virtual/perl-Test-Harness-3.440.0:0 >virtual/perl-Text-ParseWords-3.310.0:0 >virtual/perl-Time-Local-1.300.0-r1:0 >virtual/perl-version-0.992.900:0 >virtual/perl-XSLoader-0.310.0:0 >virtual/pkgconfig-2-r1:0 >virtual/service-manager-1-r1:0 >virtual/ssh-0-r1:0 -minimal >virtual/tmpfiles-0-r3:0 >virtual/ttf-fonts-1-r2:0 >virtual/udev-217-r5:0 >virtual/w3m-1:0 >www-client/pybugz-0.13-r2:0 python_targets_python3_10 python_targets_python3_11 python_targets_python3_9 >www-client/w3m-0.5.3_p20230121:0 -X -fbcon -gdk-pixbuf -gpm -imlib l10n_ja -lynxkeymap nls -nntp ssl unicode -xface >x11-apps/xprop-1.2.6:0 >x11-apps/xset-1.2.5:0 >x11-base/xcb-proto-1.15.2:0 python_targets_python3_10 python_targets_python3_11 python_targets_python3_9 >x11-base/xorg-proto-2022.2:0 -test >x11-libs/cairo-1.17.6-r1:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug glib -gtk-doc -test >x11-libs/libICE-1.1.1-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/libSM-1.2.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc uuid >x11-libs/libX11-1.8.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/libXau-1.0.11:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libxcb-1.15-r1:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb >x11-libs/libXdmcp-1.1.4-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXext-1.3.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXmu-1.1.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXt-1.2.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/pixman-0.42.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test >x11-libs/xtrans-1.4.0:0 -doc >x11-misc/compose-tables-1.8.4:0 >x11-misc/shared-mime-info-2.2:0 -test >x11-misc/xdg-utils-1.1.3_p20210805-r1:0 -dbus -doc -gnome > > >####################### ># build.log # >####################### > * python3_8 > * Using following Fortran compiler: > * F77: x86_64-gentoo-linux-musl-gfortran > * FC: x86_64-gentoo-linux-musl-gfortran >>>> Unpacking source... >>>> Unpacking lammps-17Feb2022.tar.gz to /var/tmp/portage/sci-physics/lammps-20220217/work >>>> Source unpacked in /var/tmp/portage/sci-physics/lammps-20220217/work >>>> Preparing source in /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake ... > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build" > * Hardcoded definition(s) removed in CMakeLists.txt: > * set(CMAKE_INSTALL_PREFIX "$ENV{USERPROFILE}/LAMMPS" CACHE PATH "Default i > * set(CMAKE_INSTALL_PREFIX "$ENV{HOME}/.local" CACHE PATH "Default install > * set(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING "Choose the type of build, >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake ... > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build" >cmake -C /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_SYSCONFDIR=/etc -DBUILD_SHARED_LIBS=ON -DBUILD_MPI=no -DBUILD_DOC=OFF -DENABLE_TESTING=no -DPKG_ASPHERE=ON -DPKG_BODY=ON -DPKG_CLASS2=ON -DPKG_COLLOID=ON -DPKG_COMPRESS=ON -DPKG_CORESHELL=ON -DPKG_DIPOLE=ON -DPKG_GRANULAR=ON -DPKG_KSPACE=ON -DFFT=FFTW3 -DPKG_KOKKOS=OFF -DPKG_MANYBODY=ON -DPKG_MC=ON -DPKG_MEAM=ON -DPKG_MISC=ON -DPKG_MOLECULE=ON -DPKG_PERI=ON -DPKG_QEQ=ON -DPKG_REPLICA=ON -DPKG_RIGID=ON -DPKG_SHOCK=ON -DPKG_SRD=ON -DPKG_PYTHON=no -DPKG_MPIIO=no -DPKG_VORONOI=ON -DPKG_GPU=OFF -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build/gentoo_toolchain.cmake /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake >loading initial cache file /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build/gentoo_common_config.cmake >-- The CXX compiler identification is Clang 16.0.0 >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Check for working CXX compiler: /usr/lib/llvm/16/bin/clang++ - skipped >-- Detecting CXX compile features >-- Detecting CXX compile features - done >-- Found Git: /usr/bin/git (found version "2.39.2") >-- Running check for auto-generated files from make-based build system >-- Checking for module 'mpi-cxx' >-- Package 'mpi-cxx', required by 'virtual:world', not found >-- Looking for C++ include omp.h >-- Looking for C++ include omp.h - found >-- Found OpenMP_CXX: -fopenmp=libomp (found version "5.0") >-- Found OpenMP: TRUE (found version "5.0") >-- Found PNG: /usr/lib/libpng.so (found version "1.6.39") >-- Found ZLIB: /usr/lib/libz.so (found version "1.2.13") >-- Found GZIP: /bin/gzip >-- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE) >-- Found PkgConfig: /usr/bin/x86_64-gentoo-linux-musl-pkg-config (found version "1.8.1") >-- Checking for module 'fftw3' >-- Found fftw3, version 3.3.10 >-- Found FFTW3: /usr/lib/libfftw3.so >-- Found VORO: /usr/lib/libvoro++.so >-- Checking for module 'libzstd>=1.4' >-- Found libzstd, version 1.5.4 >-- Looking for C++ include cmath >-- Looking for C++ include cmath - found >-- Generating style headers... >-- Generating package headers... >-- Generating lmpinstalledpkgs.h... >-- Found Python: /usr/bin/python3.11 (found version "3.11.2") found components: Interpreter >-- Found ClangFormat: /usr/lib/llvm/16/bin/clang-format (found suitable version "16.0.0", minimum required is "8.0") >-- The following tools and libraries have been found and configured: > * Git > * OpenMP > * PNG > * FFTW3 > * VORO > * ZLIB > * Python > * ClangFormat (required version >= 8.0) > >-- <<< Build configuration >>> > Operating System: Linux Gentoo 2.13 > Build type: RelWithDebInfo > Install path: /usr > Generator: Unix Makefiles using /usr/bin/gmake >-- Enabled packages: ASPHERE;BODY;CLASS2;COLLOID;COMPRESS;CORESHELL;DIPOLE;GRANULAR;KSPACE;MANYBODY;MC;MEAM;MISC;MOLECULE;PERI;QEQ;REPLICA;RIGID;SHOCK;SRD;VORONOI >-- <<< Compilers and Flags: >>> >-- C++ Compiler: /usr/lib/llvm/16/bin/clang++ > Type: Clang > Version: 16.0.0 > C++ Flags: -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 > Defines: LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;LAMMPS_OMP_COMPAT=4;LAMMPS_PNG;LAMMPS_GZIP;FFT_FFTW3;FFT_FFTW_THREADS;LAMMPS_ZSTD >-- <<< Linker flags: >>> >-- Executable name: lmp >-- Executable linker flags: -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >-- Shared library flags: -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >-- <<< FFT settings >>> >-- Primary FFT lib: FFTW3 >-- Using double precision FFTs >-- Using threaded FFTs >-- <<< Gentoo configuration >>> >Build type RelWithDebInfo >Install path /usr >Compiler flags: >C >C++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 >Linker flags: >Executable -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >Module -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >Shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 > >-- Configuring done >-- Generating done >-- Build files have been written to: /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake ... > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build" >make -j16 VERBOSE=1 >/usr/bin/cmake -S/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake -B/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build --check-build-system CMakeFiles/Makefile.cmake 0 >/usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build/CMakeFiles /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build//CMakeFiles/progress.marks >make -f CMakeFiles/Makefile2 all >make[1]: Entering directory '/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build' >make -f CMakeFiles/angle.h.dir/build.make CMakeFiles/angle.h.dir/depend >make -f CMakeFiles/timer.h.dir/build.make CMakeFiles/timer.h.dir/depend >make -f 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-I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/VORONOI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/CORESHELL -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build/styles -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/STUBS -isystem /usr/include/voro++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -fopenmp=libomp -std=c++11 -MD -MT CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/math_special.cpp.o -MF CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/math_special.cpp.o.d -o CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/math_special.cpp.o -c /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/math_special.cpp >[ 35%] Building CXX object 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-I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/KSPACE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MANYBODY -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MC -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MEAM -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MISC -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MOLECULE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/PERI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/QEQ -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/REPLICA -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/RIGID -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/SHOCK -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/SRD -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/VORONOI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/CORESHELL -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build/styles -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/STUBS -isystem /usr/include/voro++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -fopenmp=libomp -std=c++11 -MD -MT CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/memory.cpp.o -MF CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/memory.cpp.o.d -o CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/memory.cpp.o -c /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/memory.cpp >[ 35%] Building CXX object CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min.cpp.o >/usr/lib/llvm/16/bin/clang++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_ZSTD -Dlammps_EXPORTS -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/ASPHERE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/BODY -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/CLASS2 -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/COLLOID -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/COMPRESS -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/DIPOLE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/GRANULAR -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/KSPACE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MANYBODY -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MC -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MEAM -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MISC -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MOLECULE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/PERI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/QEQ -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/REPLICA -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/RIGID -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/SHOCK -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/SRD -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/VORONOI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/CORESHELL -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build/styles -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/STUBS -isystem /usr/include/voro++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -fopenmp=libomp -std=c++11 -MD -MT CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min.cpp.o -MF CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min.cpp.o.d -o CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min.cpp.o -c /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min.cpp >/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/info.cpp:1329:27: error: function-like macro '__GLIBC_PREREQ' is not defined >#if defined(__GLIBC__) && __GLIBC_PREREQ(2, 33) > ^ >/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/info.cpp:1333:21: error: variable has incomplete type 'struct mallinfo' > struct mallinfo mi; > ^ >/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/info.cpp:1333:12: note: forward declaration of 'mallinfo' > struct mallinfo mi; > ^ >/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/info.cpp:1334:10: error: invalid use of incomplete type 'mallinfo' > mi = mallinfo(); > ^~~~~~~~~~ >/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/info.cpp:1333:12: note: forward declaration of 'mallinfo' > struct mallinfo mi; > ^ >[ 35%] Building CXX object CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_cg.cpp.o >/usr/lib/llvm/16/bin/clang++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_ZSTD -Dlammps_EXPORTS -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/ASPHERE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/BODY -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/CLASS2 -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/COLLOID -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/COMPRESS -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/DIPOLE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/GRANULAR -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/KSPACE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MANYBODY -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MC -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MEAM -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MISC -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MOLECULE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/PERI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/QEQ -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/REPLICA -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/RIGID -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/SHOCK -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/SRD -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/VORONOI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/CORESHELL -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build/styles -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/STUBS -isystem /usr/include/voro++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -fopenmp=libomp -std=c++11 -MD -MT CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_cg.cpp.o -MF CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_cg.cpp.o.d -o CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_cg.cpp.o -c /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_cg.cpp >[ 35%] Building CXX object CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_fire.cpp.o >/usr/lib/llvm/16/bin/clang++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_ZSTD -Dlammps_EXPORTS -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/ASPHERE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/BODY -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/CLASS2 -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/COLLOID -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/COMPRESS -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/DIPOLE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/GRANULAR -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/KSPACE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MANYBODY -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MC -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MEAM -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MISC -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MOLECULE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/PERI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/QEQ -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/REPLICA -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/RIGID -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/SHOCK -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/SRD -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/VORONOI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/CORESHELL -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build/styles -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/STUBS -isystem /usr/include/voro++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color 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-I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/BODY -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/CLASS2 -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/COLLOID -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/COMPRESS -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/DIPOLE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/GRANULAR -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/KSPACE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MANYBODY -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MC -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MEAM -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MISC -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MOLECULE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/PERI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/QEQ -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/REPLICA -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/RIGID -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/SHOCK -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/SRD -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/VORONOI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/CORESHELL -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build/styles -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/STUBS -isystem /usr/include/voro++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -fopenmp=libomp -std=c++11 -MD -MT CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_fire_old.cpp.o -MF CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_fire_old.cpp.o.d -o CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_fire_old.cpp.o -c /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_fire_old.cpp >[ 35%] Building CXX object CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_hftn.cpp.o >/usr/lib/llvm/16/bin/clang++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_ZSTD -Dlammps_EXPORTS -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/ASPHERE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/BODY -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/CLASS2 -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/COLLOID -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/COMPRESS -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/DIPOLE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/GRANULAR -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/KSPACE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MANYBODY -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MC -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MEAM -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MISC -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/MOLECULE -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/PERI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/QEQ -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/REPLICA -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/RIGID -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/SHOCK -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/SRD -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/VORONOI -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/CORESHELL -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build/styles -I/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/STUBS -isystem /usr/include/voro++ -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -fopenmp=libomp -std=c++11 -MD -MT CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_hftn.cpp.o -MF CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_hftn.cpp.o.d -o CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_hftn.cpp.o -c /var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/min_hftn.cpp >3 errors generated. >make[2]: *** [CMakeFiles/lammps.dir/build.make:2946: CMakeFiles/lammps.dir/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/src/info.cpp.o] Error 1 >make[2]: *** Waiting for unfinished jobs.... >make[2]: Leaving directory '/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build' >make[1]: *** [CMakeFiles/Makefile2:162: CMakeFiles/lammps.dir/all] Error 2 >make[1]: Leaving directory '/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build' >make: *** [Makefile:136: all] Error 2 > * ERROR: sci-physics/lammps-20220217::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=sci-physics/lammps-20220217::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-physics/lammps-20220217::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-physics/lammps-20220217:20230228-151221.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-physics/lammps-20220217/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-physics/lammps-20220217/temp/environment'. > * Working directory: '/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake_build' > * S: '/var/tmp/portage/sci-physics/lammps-20220217/work/lammps-17Feb2022/cmake' >
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