* Package: sci-misc/nco-5.1.3:0/5.1.3 * Repository: gentoo * Maintainer: sci@gentoo.org * USE: abi_x86_64 amd64 elibc_musl kernel_linux openmp userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox @@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; This ebuild was merged at the following commit: https://github.com/gentoo-mirror/gentoo/commit/05d5ab113a77d26ba26a7a46a3e61c61ecd3d1a2 (Tue Feb 28 13:02:08 UTC 2023) @@@@@ END @@@@@ ################## # emerge --info: # ################## Portage 3.0.45.1 (python 3.11.2-final-0, default/linux/amd64/17.0/musl/hardened, gcc-12, musl-1.2.3-r7, 5.15.85-gentoo-dist x86_64) ================================================================= System uname: Linux-5.15.85-gentoo-dist-x86_64-AMD_EPYC_7513_32-Core_Processor-with-libc KiB Mem: 263532996 total, 160933320 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Tue, 28 Feb 2023 13:02:08 +0000 sh bash 5.2_p15-r2 ld GNU ld (Gentoo 2.40 p2) 2.40.0 app-misc/pax-utils: 1.3.7::gentoo app-shells/bash: 5.2_p15-r2::gentoo dev-lang/perl: 5.36.0-r2::gentoo dev-lang/python: 3.9.16_p2::gentoo, 3.10.10_p2::gentoo, 3.11.2_p1::gentoo dev-util/cmake: 3.25.2::gentoo dev-util/meson: 1.0.0::gentoo sys-apps/baselayout: 2.13-r1::gentoo sys-apps/openrc: 0.46::gentoo sys-apps/sandbox: 2.30-r1::gentoo sys-devel/autoconf: 2.71-r5::gentoo sys-devel/automake: 1.16.5::gentoo sys-devel/binutils: 2.40-r2::gentoo sys-devel/binutils-config: 5.5::gentoo sys-devel/clang: 16.0.0_rc3::gentoo sys-devel/gcc: 12.2.1_p20230121-r1::gentoo sys-devel/gcc-config: 2.10::gentoo sys-devel/libtool: 2.4.7-r1::gentoo sys-devel/llvm: 16.0.0_rc3::gentoo sys-devel/make: 4.4.1::gentoo sys-kernel/linux-headers: 6.2::gentoo (virtual/os-headers) sys-libs/musl: 1.2.3-r7::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 volatile: True sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* GPL-3" CBUILD="x86_64-gentoo-linux-musl" CC="clang" CFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" CHOST="x86_64-gentoo-linux-musl" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXX="clang++" CXXFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" DISTDIR="/var/tmp/portage/sci-misc/nco-5.1.3/distdir" EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" INSTALL_MASK="charset.alias /usr/share/locale/locale.alias" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" LEX="flex" MAKEOPTS="-j16" PKGDIR="/root/tbci/binpkg" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="acl amd64 bzip2 cet cli crypt debug dri elogind fortran hardened iconv ipv6 jumbo-build libglvnd libtirpc native-symlinks ncurses nls nptl openmp pam pcre pie readline seccomp split-usr ssl ssp test-rust unicode xattr xtpax zlib" ABI_X86="64" ELIBC="musl" KERNEL="linux" USERLAND="GNU" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS ############################## # emerge history (qlop -mv): # ############################## 2023-02-28T13:52:24 >>> virtual/fortran-0-r1 2023-02-28T13:52:25 >>> sci-libs/hdf5-1.12.2-r5 2023-02-28T13:52:28 >>> sci-libs/netcdf-4.9.0 ####################################### # installed packages (qlist -ICvUSS): # ####################################### acct-group/audio-0-r1:0 acct-group/cdrom-0-r1:0 acct-group/dialout-0-r1:0 acct-group/disk-0-r1:0 acct-group/floppy-0:0 acct-group/input-0-r1:0 acct-group/kmem-0-r1:0 acct-group/kvm-0-r1:0 acct-group/lp-0-r1:0 acct-group/man-0-r1:0 acct-group/messagebus-0-r1:0 acct-group/portage-0:0 acct-group/render-0-r1:0 acct-group/root-0:0 acct-group/sgx-0:0 acct-group/sshd-0-r1:0 acct-group/tape-0-r1:0 acct-group/tty-0-r1:0 acct-group/usb-0-r1:0 acct-group/video-0-r1:0 acct-user/man-1-r1:0 acct-user/messagebus-0-r1:0 acct-user/portage-0:0 acct-user/sshd-0-r1:0 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x11-libs/pixman-0.42.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test x11-libs/xtrans-1.4.0:0 -doc x11-misc/compose-tables-1.8.4:0 x11-misc/shared-mime-info-2.2:0 -test x11-misc/xdg-utils-1.1.3_p20210805-r1:0 -dbus -doc -gnome ####################### # build.log # ####################### >>> Unpacking source... >>> Unpacking nco-5.1.3.tar.gz to /var/tmp/portage/sci-misc/nco-5.1.3/work >>> Source unpacked in /var/tmp/portage/sci-misc/nco-5.1.3/work >>> Preparing source in /var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3 ... * econf: updating nco-5.1.3/autobld/config.sub with /usr/share/gnuconfig/config.sub * econf: updating nco-5.1.3/autobld/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-gentoo-linux-musl --host=x86_64-gentoo-linux-musl --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-dependency-tracking --disable-silent-rules --disable-static --docdir=/usr/share/doc/nco-5.1.3 --htmldir=/usr/share/doc/nco-5.1.3/html --with-sysroot=/ --libdir=/usr/lib --disable-udunits --disable-gpu --enable-doc --disable-dap --disable-gsl --disable-netcdf4 --disable-netcdf-4 --disable-ncap2 --disable-ncoxx --enable-openmp --disable-udunits2 checking build system type... x86_64-gentoo-linux-musl checking host system type... x86_64-gentoo-linux-musl checking target system type... x86_64-gentoo-linux-musl fatal: not a git repository (or any parent up to mount point /var/tmp) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a BSD-compatible install... /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for x86_64-gentoo-linux-musl-gcc... clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang accepts -g... yes checking for clang option to enable C11 features... none needed checking whether clang understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of clang... none checking whether the compiler supports GNU C++... yes checking whether clang++ accepts -g... yes checking for clang++ option to enable C++11 features... none needed checking dependency style of clang++... none checking how to run the C preprocessor... clang -E checking how to run the C++ preprocessor... clang++ -E checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking whether yytext is a pointer... yes checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by clang... /usr/bin/x86_64-gentoo-linux-musl-ld checking if the linker (/usr/bin/x86_64-gentoo-linux-musl-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-gentoo-linux-musl-nm -B checking the name lister (/usr/bin/x86_64-gentoo-linux-musl-nm -B) interface... BSD nm checking the maximum length of command line arguments... 98304 checking how to convert x86_64-gentoo-linux-musl file names to x86_64-gentoo-linux-musl format... func_convert_file_noop checking how to convert x86_64-gentoo-linux-musl file names to toolchain format... func_convert_file_noop checking for /usr/bin/x86_64-gentoo-linux-musl-ld option to reload object files... -r checking for x86_64-gentoo-linux-musl-objdump... x86_64-gentoo-linux-musl-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-gentoo-linux-musl-dlltool... x86_64-gentoo-linux-musl-dlltool checking how to associate runtime and link libraries... printf %s\n checking for x86_64-gentoo-linux-musl-ar... x86_64-gentoo-linux-musl-ar checking for archiver @FILE support... @ checking for x86_64-gentoo-linux-musl-strip... x86_64-gentoo-linux-musl-strip checking for x86_64-gentoo-linux-musl-ranlib... x86_64-gentoo-linux-musl-ranlib checking command to parse /usr/bin/x86_64-gentoo-linux-musl-nm -B output from clang object... ok checking for sysroot... / checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-gentoo-linux-musl-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang supports -fno-rtti -fno-exceptions... yes checking for clang option to produce PIC... -fPIC -DPIC checking if clang PIC flag -fPIC -DPIC works... yes checking if clang static flag -static works... yes checking if clang supports -c -o file.o... yes checking if clang supports -c -o file.o... (cached) yes checking whether the clang linker (/usr/bin/x86_64-gentoo-linux-musl-ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... clang++ -E checking for ld used by clang++... /usr/bin/x86_64-gentoo-linux-musl-ld -m elf_x86_64 checking if the linker (/usr/bin/x86_64-gentoo-linux-musl-ld -m elf_x86_64) is GNU ld... yes checking whether the clang++ linker (/usr/bin/x86_64-gentoo-linux-musl-ld -m elf_x86_64) supports shared libraries... yes checking for clang++ option to produce PIC... -fPIC -DPIC checking if clang++ PIC flag -fPIC -DPIC works... yes checking if clang++ static flag -static works... yes checking if clang++ supports -c -o file.o... yes checking if clang++ supports -c -o file.o... (cached) yes checking whether the clang++ linker (/usr/bin/x86_64-gentoo-linux-musl-ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for working memcmp... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for working strtod... yes checking for canonicalize_file_name... no checking for creat... yes checking for floor... yes checking for gethostname... yes checking for getpagesize... yes checking for getrusage... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkstemp... yes checking for pow... yes checking for readlink... yes checking for realpath... yes checking for regcomp... yes checking for setlocale... yes checking for sqrt... yes checking for strchr... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for egrep... (cached) /bin/grep -E checking for fcntl.h... yes checking for getopt.h... yes checking for libintl.h... yes checking for limits.h... yes checking for locale.h... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for cstdlib... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for ptrdiff_t... yes checking size of int*... 8 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no ################################# # Test for netCDF # ################################ checking for netcdf.h... yes checking for nc_open in -lnetcdf... yes ################################# # Test for netCDF4 support # ################################# checking for clang options needed to detect all undeclared functions... none needed checking whether NC_CHUNKED is declared... yes configure: netcdf.h contains netCDF4 definitions checking for netcdf_mem.h... yes Beginning generic tests for DAP support checking for getopt_long... yes checking for sinf in -lsunmath... no checking for gettext in -lintl... no checking for res_init in -lresolv... yes checking for main in -lsocket... no checking for main in -lthread... no checking for nco_open in -lnco... no checking for nc_inq_format... yes checking for nc_inq_path... yes checking for nc_set_log_level... yes checking for nc_rename_grp... yes checking for getopt... yes checking for getopt_long... (cached) yes checking for atan2... yes checking for acosf... yes checking for asinf... yes checking for atanf... yes checking for atan2f... yes checking for cosf... yes checking for expf... yes checking for fabsf... yes checking for fmodf... yes checking for log10f... yes checking for logf... yes checking for powf... yes checking for sinf... yes checking for sqrtf... yes checking for tanf... yes checking for erff... yes checking for erfcf... yes checking for gammaf... no checking for acoshf... yes checking for asinhf... yes checking for atanhf... yes checking for coshf... yes checking for sinhf... yes checking for tanhf... yes checking for ceilf... yes checking for floorf... yes checking for nearbyint... yes checking for rint... yes checking for round... yes checking for trunc... yes checking for nearbyintf... yes checking for rintf... yes checking for roundf... yes checking for truncf... yes checking for getopt_long... (cached) yes checking for strdup... yes checking for strcasecmp... yes checking for strsep... yes checking for strcasestr... yes checking for htonl... yes checking for htons... yes checking for ntohl... yes checking for ntohs... yes checking for __builtin_bswap16... no checking for __builtin_bswap32... no checking for __builtin_bswap64... no ########################################################## # Sorting out MacOS build parameters # ########################################################## ################################# # Testing for ANTLR support # ################################# checking for runantlr... no checking for antlr... no configure: antlr library was not found, disabling ncap2 build INFO: ANTLR support not found. To build ncap2, please install ANTLR and its C++ development package, e.g., 'sudo aptitude install antlr libantlr-dev' or 'sudo yum install antlr antlr-c++-devel' checking whether NCO C++ interface library libnco_c++ should be built... no ######################################## # Testing for GSL support # ######################################## ######################################## # Testing for CCR support # ######################################## checking where to put HDF5 plugins... . checking whether Community Codec Repository library should be used... no checking for regex.h... yes checking for sys/types.h... (cached) yes checking for regexec... yes checking for regcomp... (cached) yes checking for regfree... yes ######################################## # Testing for UDUNITS support # ######################################## checking for ncgen... /usr/bin/ncgen configure: Creating sample netCDF data files for self-tests ############################### # Require Shared Libs? # ############################### checking for makeinfo... yes MAKEINFO_VERSION=7.0.2 configure: Documentation support enabled checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating src/Makefile config.status: creating src/nco/Makefile config.status: creating man/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Parameters: AR_FLAGS............. cru CC................... clang CFLAGS............... -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 CPP.................. clang -E CPPFLAGS............. CXX.................. clang++ CXXFLAGS............. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ENABLE_CCR........... no ENABLE_DAP........... no ENABLE_GSL........... no ENABLE_NETCDF4....... no ENABLE_OPENMP........ yes ENABLE_UDUNITS....... no ENABLE_UDUNITS2...... no GSL_ROOT............. HAVE_ANTLR........... no HAVE_MAKEINFO........ yes HAVE_NETCDF4_H....... yes HDF5_PLUGIN_PATH..... . HOST................. HOSTNAME............. tinderbox.packet.net LDFLAGS.............. -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 LIBS................. -lresolv -lnetcdf NETCDF_ROOT.......... OPENMP_CFLAGS........ host................. x86_64-gentoo-linux-musl install prefix ...... /usr ******************************************************************* Configuration complete. You are now ready to run 'make'. Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). If the build fails, please examine the file 'configure.eg' in the top-level NCO directory. It contains examples known to build NCO for various platforms and compilers. ******************************************************************* >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3 ... make -j16 make all-recursive make[1]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3' Making all in data make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/data' /usr/bin/ncgen -o big.nc big.cdl /usr/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl /var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src/nco/ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc make[2]: /var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src/nco/ncks: No such file or directory make[2]: [Makefile:586: in_4c.nc] Error 127 (ignored) /usr/bin/ncgen -k netCDF-4 -o in_4.nc in.cdl /usr/bin/ncgen -k netCDF-4 -o in_grp.nc in_grp.cdl /usr/bin/ncgen -k netCDF-4 -o in_grp_1.nc in_grp_1.cdl /usr/bin/ncgen -k netCDF-4 -o in_grp_2.nc in_grp_2.cdl /usr/bin/ncgen -k netCDF-4 -o in_grp_3.nc in_grp_3.cdl /usr/bin/ncgen -k netCDF-4 -o in_grp_4.nc in_grp_4.cdl /usr/bin/ncgen -k netCDF-4 -o in_grp_5.nc in_grp_5.cdl /usr/bin/ncgen -k netCDF-4 -o in_grp_6.nc in_grp_6.cdl /usr/bin/ncgen -k netCDF-4 -o in_grp_7.nc in_grp_7.cdl /usr/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl /usr/bin/ncgen -k netCDF-4 -o cmip5.nc cmip5.cdl /usr/bin/ncgen -k netCDF-4 -o obs.nc obs.cdl /usr/bin/ncgen -k netCDF-4 -o mdl_1.nc mdl_1.cdl /usr/bin/ncgen -k netCDF-4 -o mdl_2.nc mdl_2.cdl /usr/bin/ncgen -k netCDF-4 -o mdl_3.nc mdl_3.cdl Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) /usr/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl make[2]: [Makefile:597: in_grp_1.nc] Aborted (ignored) /usr/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:600: in_grp_2.nc] Aborted (ignored) /usr/bin/ncgen -k netCDF-4 -o split.nc split.cdl Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:612: in_grp_4.nc] Aborted (ignored) /usr/bin/ncgen -k netCDF-4 -o ref_utf8.nc ref_utf8.cdl Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:615: in_grp_5.nc] Aborted (ignored) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) /usr/bin/ncgen -k netCDF-4 -lb -o "file://in_zarr4#mode=nczarr,file" in_zarr4.cdl Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:618: in_grp_6.nc] Aborted (ignored) make[2]: [Makefile:639: obs.nc] Aborted (ignored) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:624: in_grp_8.nc] Aborted (ignored) make[2]: [Makefile:627: cmip5.nc] Aborted (ignored) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:621: in_grp_7.nc] Aborted (ignored) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:645: mdl_2.nc] Aborted (ignored) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:642: mdl_1.nc] Aborted (ignored) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:636: mrd.nc] Aborted (ignored) make[2]: [Makefile:648: mdl_3.nc] Aborted (ignored) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:654: ref_utf8.nc] Aborted (ignored) make[2]: [Makefile:609: in_grp_3.nc] Aborted (ignored) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:594: in_grp.nc] Aborted (ignored) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:633: hdn.nc] Aborted (ignored) Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:651: split.nc] Aborted (ignored) ncgen: NetCDF: NCZarr error (/var/tmp/portage/sci-libs/netcdf-4.9.0/work/netcdf-c-4.9.0/ncgen/genbin.c:genbin_netcdf:168) make[2]: [Makefile:658: in_zarr4] Error 1 (ignored) ln -s -f in_zarr4 h0001 ln -s -f in_zarr4 h0002 ln -s -f in_zarr4 h0003 Assertion failed: fstack->nused > 0 (H5CS.c: H5CS_pop: 224) make[2]: [Makefile:591: in_4.nc] Aborted (ignored) make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/data' Making all in src make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src' Making all in nco make[3]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src/nco' clang -DHAVE_CONFIG_H -I. -I../.. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -c -o ncatted.o ncatted.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile clang -DHAVE_CONFIG_H -I. -I../.. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -c -o 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nco_bnr.c -fPIC -DPIC -o .libs/nco_bnr.o libtool: compile: clang -DHAVE_CONFIG_H -I. -I../.. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -c nco_cnv_arm.c -fPIC -DPIC -o .libs/nco_cnv_arm.o libtool: compile: clang -DHAVE_CONFIG_H -I. -I../.. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -c nco_ctl.c -fPIC -DPIC -o .libs/nco_ctl.o libtool: compile: clang -DHAVE_CONFIG_H -I. -I../.. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -c nco_flt.c -fPIC -DPIC -o .libs/nco_flt.o libtool: compile: clang -DHAVE_CONFIG_H -I. -I../.. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -c nco_cnk.c -fPIC -DPIC -o .libs/nco_cnk.o libtool: compile: clang -DHAVE_CONFIG_H -I. -I../.. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 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-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o clang -DHAVE_CONFIG_H -I. -I../.. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -c -o ncks.o ncks.c clang -DHAVE_CONFIG_H -I. -I../.. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -c -o ncpdq.o ncpdq.c clang -DHAVE_CONFIG_H -I. -I../.. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -c -o ncra.o ncra.c clang -DHAVE_CONFIG_H -I. -I../.. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -c -o ncrename.o ncrename.c clang -DHAVE_CONFIG_H -I. -I../.. -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -c -o ncwa.o ncwa.c clang -DHAVE_CONFIG_H -I. -I../.. -O2 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nco_msa.lo nco_mss_val.lo nco_mta.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ply.lo nco_ply_lst.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_s1d.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_sph.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -lresolv -lnetcdf libtool: link: clang++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/gcc/x86_64-gentoo-linux-musl/12/crtbeginS.o .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_crt.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_flt.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_kd.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_map.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_mta.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ply.o .libs/nco_ply_lst.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_s1d.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_sph.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o -lresolv -lnetcdf -L/usr/lib/gcc/x86_64-gentoo-linux-musl/12 -L/usr/lib/gcc/x86_64-gentoo-linux-musl/12/../../../../x86_64-gentoo-linux-musl/lib -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-gentoo-linux-musl/12/crtendS.o /usr/lib/crtn.o -O2 -march=x86-64 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -Wl,-soname -Wl,libnco-5.1.3-alpha02.so -o .libs/libnco-5.1.3-alpha02.so libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-5.1.3-alpha02.so" "libnco.so") libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o ncatted ncatted.o libnco.la -lresolv -lnetcdf /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o ncbo ncbo.o libnco.la -lresolv -lnetcdf /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o ncecat ncecat.o libnco.la -lresolv -lnetcdf /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o ncflint ncflint.o libnco.la -lresolv -lnetcdf /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o ncks ncks.o libnco.la -lresolv -lnetcdf /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o ncpdq ncpdq.o libnco.la -lresolv -lnetcdf /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o ncra ncra.o libnco.la -lresolv -lnetcdf /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o ncrename ncrename.o libnco.la -lresolv -lnetcdf /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o ncwa ncwa.o ncap_utl.o ncap_lex.o libnco.la -lresolv -lnetcdf libtool: link: clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/ncecat ncecat.o ./.libs/libnco.so -lresolv -lnetcdf libtool: link: clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/ncks ncks.o ./.libs/libnco.so -lresolv -lnetcdf libtool: link: clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/ncbo ncbo.o ./.libs/libnco.so -lresolv -lnetcdf libtool: link: clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/ncrename ncrename.o ./.libs/libnco.so -lresolv -lnetcdf libtool: link: clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/ncra ncra.o ./.libs/libnco.so -lresolv -lnetcdf libtool: link: clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/ncflint ncflint.o ./.libs/libnco.so -lresolv -lnetcdf libtool: link: clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/ncpdq ncpdq.o ./.libs/libnco.so -lresolv -lnetcdf libtool: link: clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/ncatted ncatted.o ./.libs/libnco.so -lresolv -lnetcdf libtool: link: clang -O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -std=gnu11 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/ncwa ncwa.o ncap_utl.o ncap_lex.o ./.libs/libnco.so -lresolv -lnetcdf make[3]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src/nco' make[3]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src' make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src' Making all in man make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/man' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/man' Making all in doc make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/doc' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/sh '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/autobld/missing' makeinfo --version) >/dev/null 2>&1; then \ for f in nco.info nco.info-[0-9] nco.info-[0-9][0-9] nco.i[0-9] nco.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/sh '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/autobld/missing' makeinfo -I . \ -o nco.info nco.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./nco.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc nco.texi:1976: warning: node name with index entries should not contain `. ' make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/doc' make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3' make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3' make[1]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3' >>> Source compiled. * Skipping make test/check due to ebuild restriction. >>> Test phase [disabled because of RESTRICT=test]: sci-misc/nco-5.1.3 >>> Install sci-misc/nco-5.1.3 into /var/tmp/portage/sci-misc/nco-5.1.3/image make -j16 DESTDIR=/var/tmp/portage/sci-misc/nco-5.1.3/image install Making install in data make[1]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/data' make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/data' make[2]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin' /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c ncclimo ncremap ncz2psx '/var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin' make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/data' make[1]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/data' Making install in src make[1]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src' Making install in nco make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src/nco' make[3]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src/nco' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/var/tmp/portage/sci-misc/nco-5.1.3/image/usr/lib' /bin/sh ../../libtool --tag=CXX --mode=install /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c libnco.la '/var/tmp/portage/sci-misc/nco-5.1.3/image/usr/lib' libtool: install: /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c .libs/libnco-5.1.3-alpha02.so /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/lib/libnco-5.1.3-alpha02.so libtool: install: (cd /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/lib && { ln -s -f libnco-5.1.3-alpha02.so libnco.so || { rm -f libnco.so && ln -s libnco-5.1.3-alpha02.so libnco.so; }; }) libtool: install: /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c .libs/libnco.lai /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/lib/libnco.la libtool: warning: remember to run 'libtool --finish /usr/lib' /bin/mkdir -p '/var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin' libtool: warning: 'libnco.la' has not been installed in '/usr/lib' libtool: install: /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c .libs/ncatted /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin/ncatted libtool: warning: 'libnco.la' has not been installed in '/usr/lib' libtool: install: /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c .libs/ncbo /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin/ncbo libtool: warning: 'libnco.la' has not been installed in '/usr/lib' libtool: install: /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c .libs/ncecat /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin/ncecat libtool: warning: 'libnco.la' has not been installed in '/usr/lib' libtool: install: /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c .libs/ncflint /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin/ncflint libtool: warning: 'libnco.la' has not been installed in '/usr/lib' libtool: install: /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c .libs/ncks /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin/ncks libtool: warning: 'libnco.la' has not been installed in '/usr/lib' libtool: install: /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c .libs/ncpdq /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin/ncpdq libtool: warning: 'libnco.la' has not been installed in '/usr/lib' libtool: install: /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c .libs/ncra /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin/ncra libtool: warning: 'libnco.la' has not been installed in '/usr/lib' libtool: install: /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c .libs/ncrename /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin/ncrename libtool: warning: 'libnco.la' has not been installed in '/usr/lib' libtool: install: /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c .libs/ncwa /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin/ncwa make install-exec-hook make[4]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src/nco' cd /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff) cd /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea) cd /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces) cd /var/tmp/portage/sci-misc/nco-5.1.3/image/usr/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat) make[4]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src/nco' make[3]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src/nco' make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src/nco' make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src' make[3]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src' make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src' make[1]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/src' Making install in man make[1]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/man' make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/man' make[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/var/tmp/portage/sci-misc/nco-5.1.3/image/usr/share/man/man1' /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c -m 644 ncap2.1 ncatted.1 ncbo.1 ncclimo.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncpdq.1 ncra.1 ncrcat.1 ncremap.1 ncrename.1 ncwa.1 ncz2psx.1 '/var/tmp/portage/sci-misc/nco-5.1.3/image/usr/share/man/man1' make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/man' make[1]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/man' Making install in doc make[1]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/doc' make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/doc' make[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/var/tmp/portage/sci-misc/nco-5.1.3/image/usr/share/info' /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c -m 644 ./nco.info ./nco.info-1 ./nco.info-2 ./nco.info-3 ./nco.info-4 '/var/tmp/portage/sci-misc/nco-5.1.3/image/usr/share/info' install-info --info-dir='/var/tmp/portage/sci-misc/nco-5.1.3/image/usr/share/info' '/var/tmp/portage/sci-misc/nco-5.1.3/image/usr/share/info/nco.info' make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/doc' make[1]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/doc' make[1]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3' make[2]: Entering directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3' make[1]: Leaving directory '/var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3' >>> Completed installing sci-misc/nco-5.1.3 into /var/tmp/portage/sci-misc/nco-5.1.3/image * Final size of build directory: 45000 KiB (43.9 MiB) * Final size of installed tree: 4844 KiB ( 4.7 MiB) * QA Notice: Found the following implicit function declarations in configure logs: * /var/tmp/portage/sci-misc/nco-5.1.3/work/nco-5.1.3/config.log:1204 - strchr * Check that no features were accidentally disabled. * See https://wiki.gentoo.org/wiki/Modern_C_porting. strip: x86_64-gentoo-linux-musl-strip --strip-unneeded -N __gentoo_check_ldflags__ -R .comment -R .GCC.command.line -R .note.gnu.gold-version /usr/bin/ncatted /usr/bin/ncbo /usr/bin/ncecat /usr/lib/libnco-5.1.3-alpha02.so /usr/bin/ncflint /usr/bin/ncks /usr/bin/ncpdq /usr/bin/ncra /usr/bin/ncrename /usr/bin/ncwa >>> Done.