* Package: sci-mathematics/petsc-3.18.2:0 * Repository: gentoo * Maintainer: tamiko@gentoo.org sci-mathematics@gentoo.org * USE: abi_x86_64 amd64 debug elibc_musl examples fortran kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox @@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; This ebuild was merged at the following commit: https://github.com/gentoo-mirror/gentoo/commit/b2869235cb06261c6d102a76ab50498ed9a3a789 (Tue Feb 28 11:19:05 UTC 2023) @@@@@ END @@@@@ ################## # emerge --info: # ################## Portage 3.0.45.1 (python 3.11.2-final-0, default/linux/amd64/17.0/musl/hardened, gcc-12, musl-1.2.3-r7, 5.15.85-gentoo-dist x86_64) ================================================================= System uname: Linux-5.15.85-gentoo-dist-x86_64-AMD_EPYC_7513_32-Core_Processor-with-libc KiB Mem: 263532996 total, 166151304 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Tue, 28 Feb 2023 11:19:04 +0000 sh bash 5.2_p15-r2 ld GNU ld (Gentoo 2.40 p2) 2.40.0 app-misc/pax-utils: 1.3.7::gentoo app-shells/bash: 5.2_p15-r2::gentoo dev-lang/perl: 5.36.0-r2::gentoo dev-lang/python: 3.9.16_p2::gentoo, 3.10.10_p2::gentoo, 3.11.2_p1::gentoo dev-util/cmake: 3.25.2::gentoo dev-util/meson: 1.0.0::gentoo sys-apps/baselayout: 2.13-r1::gentoo sys-apps/openrc: 0.46::gentoo sys-apps/sandbox: 2.30-r1::gentoo sys-devel/autoconf: 2.71-r5::gentoo sys-devel/automake: 1.16.5::gentoo sys-devel/binutils: 2.40-r2::gentoo sys-devel/binutils-config: 5.5::gentoo sys-devel/clang: 16.0.0_rc3::gentoo sys-devel/gcc: 12.2.1_p20230121-r1::gentoo sys-devel/gcc-config: 2.10::gentoo sys-devel/libtool: 2.4.7-r1::gentoo sys-devel/llvm: 16.0.0_rc3::gentoo sys-devel/make: 4.4.1::gentoo sys-kernel/linux-headers: 6.2::gentoo (virtual/os-headers) sys-libs/musl: 1.2.3-r7::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 volatile: True sync-rsync-verify-metamanifest: yes sync-rsync-verify-jobs: 1 sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* BSD-2" CBUILD="x86_64-gentoo-linux-musl" CC="clang" CFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" CHOST="x86_64-gentoo-linux-musl" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXX="clang++" CXXFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" DISTDIR="/var/tmp/portage/sci-mathematics/petsc-3.18.2/distdir" EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" INSTALL_MASK="charset.alias /usr/share/locale/locale.alias" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" LEX="flex" MAKEOPTS="-j16" PKGDIR="/root/tbci/binpkg" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="acl amd64 bzip2 cet cli crypt debug dri elogind examples fortran hardened iconv ipv6 jumbo-build libglvnd libtirpc native-symlinks ncurses nls nptl openmp pam pcre pie readline seccomp split-usr ssl ssp test-rust unicode xattr xtpax zlib" ABI_X86="64" ELIBC="musl" KERNEL="linux" USERLAND="GNU" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS ############################## # emerge history (qlop -mv): # ############################## 2023-02-28T12:33:41 >>> virtual/fortran-0-r1 2023-02-28T12:33:43 >>> sci-libs/lapack-3.11 2023-02-28T12:33:46 >>> virtual/blas-3.8 2023-02-28T12:33:46 >>> virtual/lapack-3.10 ####################################### # installed packages (qlist -ICvUSS): # ####################################### acct-group/audio-0-r1:0 acct-group/cdrom-0-r1:0 acct-group/dialout-0-r1:0 acct-group/disk-0-r1:0 acct-group/floppy-0:0 acct-group/input-0-r1:0 acct-group/kmem-0-r1:0 acct-group/kvm-0-r1:0 acct-group/lp-0-r1:0 acct-group/man-0-r1:0 acct-group/messagebus-0-r1:0 acct-group/portage-0:0 acct-group/render-0-r1:0 acct-group/root-0:0 acct-group/sgx-0:0 acct-group/sshd-0-r1:0 acct-group/tape-0-r1:0 acct-group/tty-0-r1:0 acct-group/usb-0-r1:0 acct-group/video-0-r1:0 acct-user/man-1-r1:0 acct-user/messagebus-0-r1:0 acct-user/portage-0:0 acct-user/sshd-0-r1:0 app-admin/eselect-1.4.21:0 -doc -emacs -vim-syntax app-admin/perl-cleaner-2.30-r1:0 -pkgcore app-alternatives/awk-4:0 -busybox gawk -mawk -nawk split-usr app-alternatives/bzip2-1:0 -lbzip2 -pbzip2 reference split-usr app-alternatives/gzip-0:0 -pigz reference split-usr app-alternatives/lex-0-r1:0 flex -reflex app-alternatives/sh-0:0 bash -busybox -dash -ksh -lksh -mksh app-alternatives/tar-0:0 gnu -libarchive split-usr app-alternatives/yacc-1-r2:0 bison -byacc -reference app-arch/bzip2-1.0.8-r4:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs -verify-sig app-arch/gzip-1.12-r4:0 -pic -static -verify-sig app-arch/libarchive-3.6.1-r1:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 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-abi_x86_x32 split-usr -static-libs unicode -utils -verify-sig sys-libs/timezone-data-2022g:0 -leaps-timezone nls -zic-slim sys-libs/zlib-1.2.13-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs -verify-sig sys-process/procps-3.3.17-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode sys-process/psmisc-23.6:0 -X -apparmor nls -selinux -test virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs virtual/blas-3.8:0 -eselect-ldso virtual/dev-manager-0-r2:0 virtual/editor-0-r4:0 virtual/fortran-0-r1:0 openmp virtual/lapack-3.10:0 -eselect-ldso virtual/libc-1-r1:0 virtual/libcrypt-2-r1:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 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virtual/perl-XSLoader-0.310.0:0 virtual/pkgconfig-2-r1:0 virtual/service-manager-1-r1:0 virtual/ssh-0-r1:0 -minimal virtual/tmpfiles-0-r3:0 virtual/ttf-fonts-1-r2:0 virtual/udev-217-r5:0 virtual/w3m-1:0 www-client/pybugz-0.13-r2:0 python_targets_python3_10 python_targets_python3_11 python_targets_python3_9 www-client/w3m-0.5.3_p20230121:0 -X -fbcon -gdk-pixbuf -gpm -imlib l10n_ja -lynxkeymap nls -nntp ssl unicode -xface x11-apps/xprop-1.2.6:0 x11-apps/xset-1.2.5:0 x11-base/xcb-proto-1.15.2:0 python_targets_python3_10 python_targets_python3_11 python_targets_python3_9 x11-base/xorg-proto-2022.2:0 -test x11-libs/cairo-1.17.6-r1:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug glib -gtk-doc -test x11-libs/libICE-1.1.1-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 x11-libs/libSM-1.2.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc uuid x11-libs/libX11-1.8.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test x11-libs/libXau-1.0.11:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libxcb-1.15-r1:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb x11-libs/libXdmcp-1.1.4-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libXext-1.3.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libXmu-1.1.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libXt-1.2.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test x11-libs/pixman-0.42.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test x11-libs/xtrans-1.4.0:0 -doc x11-misc/compose-tables-1.8.4:0 x11-misc/shared-mime-info-2.2:0 -test x11-misc/xdg-utils-1.1.3_p20210805-r1:0 -dbus -doc -gnome ####################### # build.log # ####################### * Checking whether python3_11 is suitable ... * >=dev-lang/python-3.11.1-r1:3.11 ... [ ok ] * Using python3.11 to build (via PYTHON_COMPAT iteration) >>> Unpacking source... >>> Unpacking petsc-3.18.2.tar.gz to /var/tmp/portage/sci-mathematics/petsc-3.18.2/work >>> Source unpacked in /var/tmp/portage/sci-mathematics/petsc-3.18.2/work >>> Preparing source in /var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2 ... * Applying petsc-3.7.0-disable-rpath.patch ... [ ok ] * Applying petsc-3.16.0-fix_sandbox_violation.patch ... patching file config/PETSc/options/installDir.py Hunk #1 succeeded at 36 with fuzz 1 (offset -4 lines). [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2 ... ./configure --prefix=/usr --build=x86_64-gentoo-linux-musl --host=x86_64-gentoo-linux-musl --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib/petscdir/lib scrollOutput=1 AR=x86_64-gentoo-linux-musl-ar CFLAGS=-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC CPPFLAGS= CXXFLAGS=-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC CXXOPTFLAGS=-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC FCFLAGS=-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC FFLAGS=-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 MAKEFLAGS= RANLIB=x86_64-gentoo-linux-musl-ranlib --prefix=/usr/lib/petscdir/ --with-blas-lapack-lib=-lblas -llapack --with-cmake:BOOL=1 --with-gnu-compilers --with-imagemagick=0 --with-petsc-arch=linux-gnu-c-debug --with-precision=double --with-python=0 --with-shared-libraries --with-single-library --with-windows-graphics=0 --with-debugging=1 --with-fortran=1 --with-mpi=0 --with-mpi-compilers=0 --with-pthread=0 --with-scalar-type=real --with-cc=clang --with-cxx=clang++ --with-afterimage=0 --with-hypre=0 --with-superlu=0 --with-ptscotch=0 --with-scalapack=0 --with-mumps=0 --with-fc=x86_64-gentoo-linux-musl-gfortran --without-boost --without-fftw --without-hdf5 --without-x --without-x11 ============================================================================================= Configuring PETSc to compile on your system ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:1045) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:20) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:22) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:29) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:42) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:31) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:70) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:46) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:84) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:23) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:28) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2648) ============================================================================================= ***** WARNING ***** Found environment variable: CC=clang. Ignoring it, since its also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: CXX=clang++. Ignoring it, since its also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: CFLAGS=-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0. Ignoring it, since its also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: CXXFLAGS=-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0. Ignoring it, since its also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: FCFLAGS=-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0. Ignoring it, since its also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: FFLAGS=-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0. Ignoring it, since its also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: CPPFLAGS=. Ignoring it, since its also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0. Ignoring it, since its also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: AR=x86_64-gentoo-linux-musl-ar. Ignoring it, since its also set on command line ============================================================================================= ============================================================================================= ***** WARNING ***** Found environment variable: RANLIB=x86_64-gentoo-linux-musl-ranlib. Ignoring it, since its also set on command line ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2665) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:2618) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:2639) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:723) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1341) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1384) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1690) TESTING: checkDeviceHostCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:747) TESTING: checkCxxDialect from config.setCompilers(config/BuildSystem/config/setCompilers.py:769) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1726) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1420) TESTING: checkDeviceHostCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:747) TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1490) TESTING: checkDeviceHostCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:747) TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1560) TESTING: checkDeviceHostCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:747) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1828) TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1864) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1883) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:2054) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:2153) TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:2222) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:2304) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:2004) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:2418) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:2452) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:2498) TESTING: checkPragma from config.setCompilers(config/BuildSystem/config/setCompilers.py:1963) TESTING: checkAtFileOption from config.setCompilers(config/BuildSystem/config/setCompilers.py:2690) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:2547) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:38) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:82) TESTING: checkIntelHardwareSupport from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:173) TESTING: checkCompilerMacros from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:164) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1384) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:359) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:370) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:162) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1335) TESTING: checkCxxRestrict from config.compilers(config/BuildSystem/config/compilers.py:121) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:389) TESTING: checkCxxComplexFix from config.compilers(config/BuildSystem/config/compilers.py:416) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:445) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:787) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:825) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:835) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1300) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1452) TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:147) TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:174) TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:188) TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:223) TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:310) TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:316) TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:382) TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:136) TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:126) TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:427) TESTING: checkFortran90LineLength from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:163) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:107) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:141) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:176) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:198) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:204) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:219) TESTING: configureL1CacheLineSize from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:127) TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:95) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:106) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:106) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:106) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:106) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:106) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:106) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:106) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:140) TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:162) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:28) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:168) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:168) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:168) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:168) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:297) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:318) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:327) TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:336) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:349) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:357) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:366) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:382) TESTING: checkExecutableExportFlag from config.libraries(config/BuildSystem/config/libraries.py:608) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:38) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:98) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:26) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:26) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:54) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:60) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:80) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:97) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:123) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:33) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:48) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:92) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:98) TESTING: checkSymbolResolution from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:107) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:42) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:83) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:21) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:43) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:73) TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:997) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) TESTING: locateBison from config.packages.bison(config/BuildSystem/config/packages/bison.py:30) TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.X(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:560) TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:833) TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:30) TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:69) TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.gsl(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.gsl(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.cams(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.cams(config/BuildSystem/config/package.py:997) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:29) TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.NVSHMEM(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:1001) TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:900) TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:926) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:168) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1068) TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:993) TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:137) TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:997) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:53) TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.opencascade(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.opencascade(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.amgx(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.amgx(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.hcephes(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.hcephes(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.metis(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.KS(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.KS(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.pthread(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.mmg(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.mmg(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.parmmg(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.parmmg(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.Zoltan(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.ADIOS(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.openmp(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.viennacl(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.ColPack(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.ADOLC(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.openblas(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.blis(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.BlasLapack(config/BuildSystem/config/package.py:1001) TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:900) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:494) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:580) TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:630) TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:650) TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:675) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:691) TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:750) TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:1068) TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:993) TESTING: consistencyChecks from config.packages.sundials2(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.sundials2(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.spai(config/BuildSystem/config/packages/spai.py:53) TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.raja(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.raja(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.pARMS(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.p4est(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:1001) TESTING: checkDependencies from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:900) TESTING: configureLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) TESTING: checkVersion from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:1068) TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:993) TESTING: consistencyChecks from config.packages.mkl_sparse(config/BuildSystem/config/package.py:1001) TESTING: checkDependencies from config.packages.mkl_sparse(config/BuildSystem/config/package.py:900) TESTING: configureLibrary from config.packages.mkl_sparse(config/BuildSystem/config/packages/mkl_sparse.py:21) TESTING: checkVersion from config.packages.mkl_sparse(config/BuildSystem/config/package.py:1068) TESTING: checkSharedLibrary from config.packages.mkl_sparse(config/BuildSystem/config/package.py:993) TESTING: consistencyChecks from config.packages.mkl_cpardiso(config/BuildSystem/config/packages/mkl_cpardiso.py:20) TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.kokkos(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.kokkos(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.htool(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.htool(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.magma(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.magma(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.kblas(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.kblas(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.h2opus(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.h2opus(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.fftw(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.elemental(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.elemental(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.ml(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.ml(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.mkl_pardiso(config/BuildSystem/config/packages/mkl_pardiso.py:21) TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.SuperLU(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.SuperLU(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.PaStiX(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.PaStiX(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.scalapack(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.scalapack(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.strumpack(config/BuildSystem/config/packages/strumpack.py:66) TESTING: alternateConfigureLibrary from config.packages.strumpack(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.MUMPS(config/BuildSystem/config/packages/MUMPS.py:59) TESTING: alternateConfigureLibrary from config.packages.MUMPS(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.MOAB(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.SuiteSparse(config/BuildSystem/config/packages/SuiteSparse.py:176) TESTING: alternateConfigureLibrary from config.packages.SuiteSparse(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.Chombo(config/BuildSystem/config/packages/Chombo.py:126) TESTING: alternateConfigureLibrary from config.packages.Chombo(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.hypre(config/BuildSystem/config/packages/hypre.py:182) TESTING: alternateConfigureLibrary from config.packages.hypre(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.Trilinos(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.Trilinos(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.mstk(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.mstk(config/BuildSystem/config/package.py:997) TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:97) TESTING: consistencyChecks from config.packages.hpddm(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.hpddm(config/BuildSystem/config/packages/hpddm.py:106) TESTING: consistencyChecks from config.packages.bamg(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.bamg(config/BuildSystem/config/packages/bamg.py:85) TESTING: consistencyChecks from config.packages.MFEM(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.MFEM(config/BuildSystem/config/packages/MFEM.py:217) TESTING: consistencyChecks from config.packages.AMReX(config/BuildSystem/config/package.py:1001) TESTING: alternateConfigureLibrary from config.packages.AMReX(config/BuildSystem/config/packages/AMReX.py:151) TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:732) TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:534) TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:602) TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:620) TESTING: configureIsatty from PETSc.Configure(config/PETSc/Configure.py:614) TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:685) TESTING: configureAlign from PETSc.Configure(config/PETSc/Configure.py:669) TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:692) TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:710) TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:738) TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:760) TESTING: configureDarwin from PETSc.Configure(config/PETSc/Configure.py:751) TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:766) TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:844) TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:860) TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:877) TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:916) TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:932) TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:597) Compilers: C Compiler: clang -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -g3 -O0 Version: clang version 16.0.0 C++ Compiler: clang++ -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -std=gnu++17 -fPIC Version: clang version 16.0.0 Fortran Compiler: x86_64-gentoo-linux-musl-gfortran -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -g -O0 Version: GNU Fortran (Gentoo Hardened 12.2.1_p20230121-r1 p10) 12.2.1 20230121 Linkers: Shared linker: clang -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -shared -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -g3 -O0 Dynamic linker: clang -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -shared -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -g3 -O0 Libraries linked against: -lstdc++ -ldl BlasLapack: Libraries: -lblas -llapack Unknown if this uses OpenMP (try export OMP_NUM_THREADS=<1-4> yourprogram -log_view) uses 4 byte integers mpiexec: ${PETSC_DIR}/lib/petsc/bin/petsc-mpiexec.uni cmake: Version: 3.25.2 Executable: /usr/bin/cmake python: Executable: /usr/bin/python3.11 regex: bison: Version: 3.8 Executable: /usr/bin/bison PETSc: Language used to compile PETSc: C PETSC_ARCH: linux-gnu-c-debug PETSC_DIR: /var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2 Prefix: /usr/lib/petscdir Scalar type: real Precision: double Integer size: 4 bytes Single library: yes Shared libraries: yes Memory alignment from malloc(): 16 bytes Using GNU make: /usr/bin/gmake xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with: make PETSC_DIR=/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2 PETSC_ARCH=linux-gnu-c-debug all xxx=========================================================================xxx >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2 ... make -j16 gmake[2]: Entering directory '/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2' ========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems. Please check the mailing list archives and consider subscribing. https://petsc.org/release/community/mailing/ ========================================== Starting make run on tinderbox.packet.net at Tue, 28 Feb 2023 12:34:12 +0000 Machine characteristics: Linux tinderbox.packet.net 5.15.85-gentoo-dist #1 SMP Thu Dec 22 12:11:58 -00 2022 x86_64 AMD EPYC 7513 32-Core Processor AuthenticAMD GNU/Linux ----------------------------------------- Using PETSc directory: /var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2 Using PETSc arch: linux-gnu-c-debug ----------------------------------------- PETSC_VERSION_RELEASE 1 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 18 PETSC_VERSION_SUBMINOR 2 PETSC_VERSION_DATE "Nov 28, 2022" PETSC_VERSION_GIT "v3.18.2" PETSC_VERSION_DATE_GIT "2022-11-28 10:21:20 -0600" PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_ PETSC_VERSION_EQ PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ----------------------------------------- Using configure Options: --prefix=/usr --build=x86_64-gentoo-linux-musl --host=x86_64-gentoo-linux-musl --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib/petscdir/lib scrollOutput=1 AR=x86_64-gentoo-linux-musl-ar CFLAGS="-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC" CPPFLAGS= CXXFLAGS="-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC" CXXOPTFLAGS="-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC" FCFLAGS="-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC" FFLAGS="-march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" MAKEFLAGS= RANLIB=x86_64-gentoo-linux-musl-ranlib --prefix=/usr/lib/petscdir/ --with-blaslapack-lib="-lblas -llapack " --with-cmake:BOOL=1 --with-gnu-compilers --with-imagemagick=0 --with-petsc-arch=linux-gnu-c-debug --with-precision=double --with-python=0 --with-shared-libraries --with-single-library --with-windows-graphics=0 --with-debugging=1 --with-fortran=1 --with-mpi=0 --with-mpi-compilers=0 --with-pthread=0 --with-scalar-type=real --with-cc=clang --with-cxx=clang++ --with-afterimage=0 --with-hypre=0 --with-superlu=0 --with-ptscotch=0 --with-scalapack=0 --with-mumps=0 --with-fc=x86_64-gentoo-linux-musl-gfortran --with-boost=0 --with-fftw=0 --with-hdf5=0 --with-x=0 --with-x11=0 Using configuration flags: grep: warning: stray \ before # #define INCLUDED_PETSCCONF_H #define MPI_Comm_create_errhandler(p_err_fun,p_errhandler) MPI_Errhandler_create((p_err_fun),(p_errhandler)) #define MPI_Comm_set_errhandler(comm,p_errhandler) MPI_Errhandler_set((comm),(p_errhandler)) #define MPI_Type_create_struct(count,lens,displs,types,newtype) MPI_Type_struct((count),(lens),(displs),(types),(newtype)) #define PETSC_ARCH "" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM(why) __attribute__((deprecated(why))) #define PETSC_DEPRECATED_FUNCTION(why) __attribute__((deprecated(why))) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute__((deprecated(why))) #define PETSC_DIR "/usr/lib/petscdir" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_CXX_DIALECT_CXX17 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_FSTATAT 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPIUNI 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PACKAGES ":blaslapack:mathlib:mpi:regex:" #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_POSIX_MEMALIGN 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_DEFAULT 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LIB_DIR "/usr/lib/petscdir/lib" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPICC_SHOW "Unavailable" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/usr/bin/python3.11" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DMLANDAU_2D 1 #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 ----------------------------------------- Using C compile: clang -o .o -c -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -g3 -O0 mpicc -show: Unavailable C compiler version: clang version 16.0.0 Using C++ compile: clang++ -o .o -c -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -std=gnu++17 -fPIC -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -I/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2/include -I/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2/linux-gnu-c-debug/include C++ compiler version: clang version 16.0.0 Using Fortran compile: x86_64-gentoo-linux-musl-gfortran -o .o -c -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -g -O0 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -I/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2/include -I/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2/linux-gnu-c-debug/include mpif90 -show: Unavailable Fortran compiler version: GNU Fortran (Gentoo Hardened 12.2.1_p20230121-r1 p10) 12.2.1 20230121 ----------------------------------------- Using C/C++ linker: clang Using C/C++ flags: -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -g3 -O0 Using Fortran linker: x86_64-gentoo-linux-musl-gfortran Using Fortran flags: -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -march=x86-64 -pipe -pipe -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fPIC -g -O0 ----------------------------------------- Using system modules: Using mpi.h: mpiuni ----------------------------------------- Using libraries: -L/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2/linux-gnu-c-debug/lib -L/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2/linux-gnu-c-debug/lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/12 -L/usr/x86_64-gentoo-linux-musl/lib -lpetsc -lblas -llapack -lstdc++ -ldl -lgfortran -lm -lgfortran -lm -lssp_nonshared -lgcc_s -lquadmath -lstdc++ -ldl ------------------------------------------ Using mpiexec: /var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2/lib/petsc/bin/petsc-mpiexec.uni ------------------------------------------ Using MAKE: /usr/bin/gmake Using MAKEFLAGS: -j40 -l96.0 w -j16 --jobserver-auth=fifo:/var/tmp/portage/sci-mathematics/petsc-3.18.2/temp/GMfifo24451 -- PETSC_DIR=/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2 PETSC_ARCH=linux-gnu-c-debug ========================================== gmake[3]: Entering directory '/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2' /usr/bin/python3.11 ./config/gmakegen.py --petsc-arch=linux-gnu-c-debug /usr/bin/python3.11 /var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2/config/gmakegentest.py --petsc-dir=/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2 --petsc-arch=linux-gnu-c-debug --testdir=./linux-gnu-c-debug/tests gmake[3]: *** No rule to make target 'w'. Stop. gmake[3]: Leaving directory '/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2' gmake[2]: *** [/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2/lib/petsc/conf/rules:56: libs] Error 2 gmake[2]: Leaving directory '/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2' **************************ERROR************************************* Error during compile, check linux-gnu-c-debug/lib/petsc/conf/make.log Send it and linux-gnu-c-debug/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov ******************************************************************** gmake[1]: *** [makefile:34: all] Error 1 make: *** [GNUmakefile:9: all] Error 2 * ERROR: sci-mathematics/petsc-3.18.2::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-mathematics/petsc-3.18.2::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-mathematics/petsc-3.18.2::gentoo'`. * The complete build log is located at '/var/log/emerge-log/build/sci-mathematics/petsc-3.18.2:20230228-123348.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-mathematics/petsc-3.18.2/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/petsc-3.18.2/temp/environment'. * Working directory: '/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2' * S: '/var/tmp/portage/sci-mathematics/petsc-3.18.2/work/petsc-3.18.2'