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Gentoo's Bugzilla – Attachment 843219 Details for
Bug 886478
sci-biology/embassy-signature-0.1.660-r1 - file collision with app-admin/tripwire-2.4.3.7
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sci-biology:embassy-signature-0.1.660-r1:20221217-115316.log
sci-biology:embassy-signature-0.1.660-r1:20221217-115316.log (text/plain), 26.68 KB, created by
Toralf Förster
on 2022-12-17 13:22:32 UTC
(
hide
)
Description:
sci-biology:embassy-signature-0.1.660-r1:20221217-115316.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2022-12-17 13:22:32 UTC
Size:
26.68 KB
patch
obsolete
> * Package: sci-biology/embassy-signature-0.1.660-r1:0 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > >>>> Unpacking source... >>>> Unpacking embassy-signature-0.1.660.tar.gz to /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work >>>> Source unpacked in /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work >>>> Preparing source in /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650 ... > * Applying embassy-signature-0.1.650_fix-build-system.patch ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650' ... > * Running 'libtoolize --install --copy --force --automake' ... > [ ok ] > * Running 'aclocal -I m4 --system-acdir=/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/temp/aclocal' ... > [ ok ] > * Moving configure.in to configure.ac (bug #426262) > * Running 'autoconf --force' ... > [ ok ] > * Running 'autoheader' ... > [ ok ] > * Running 'automake --add-missing --copy --force-missing' ... > [ ok ] > * Running elibtoolize in: SIGNATURE-0.1.650/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650 ... > * econf: updating SIGNATURE-0.1.650/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating SIGNATURE-0.1.650/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-dependency-tracking --disable-silent-rules --disable-static --docdir=/usr/share/doc/embassy-signature-0.1.660-r1 --htmldir=/usr/share/doc/embassy-signature-0.1.660-r1/html --with-sysroot=/ --libdir=/usr/lib64 --enable-shared --without-x --without-pngdriver --without-hpdf --without-mysql --without-postgresql --enable-large --without-java --enable-systemlibs >checking for gawk... gawk >checking for x86_64-pc-linux-gnu-icc... no >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether the compiler supports GNU C... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to enable C11 features... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking for x86_64-pc-linux-gnu-icpc... no >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether the compiler supports GNU C++... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking for x86_64-pc-linux-gnu-g++ option to enable C++11 features... none needed >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for a BSD-compatible install... /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c >checking whether ln -s works... yes >checking whether make sets $(MAKE)... yes >checking for a race-free mkdir -p... /usr/sbin/mkdir -p >checking whether build environment is sane... yes >checking whether make supports the include directive... yes (GNU style) >checking whether make supports nested variables... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking dependency style of x86_64-pc-linux-gnu-g++... none >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for a sed that does not truncate output... /usr/sbin/sed >checking for grep that handles long lines and -e... /usr/sbin/grep >checking for egrep... /usr/sbin/grep -E >checking for fgrep... /usr/sbin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/sbin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/sbin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-file... no >checking for file... file >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... x86_64-pc-linux-gnu-dlltool >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/sbin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... / >checking for a working dd... /usr/sbin/dd >checking how to truncate binary pipes... /usr/sbin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... mt >checking if mt is a manifest tool... no >checking for stdio.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for strings.h... yes >checking for sys/stat.h... yes >checking for sys/types.h... yes >checking for unistd.h... yes >checking for vfork.h... no >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for X... disabled >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking for egrep... (cached) /usr/sbin/grep -E >checking for unistd.h... (cached) yes >checking for TargetConfig.h... no >checking whether byte ordering is bigendian... no >checking for an ANSI C-conforming const... yes >checking for inline... inline >checking for pid_t... yes >checking for size_t... yes >checking whether struct tm is in sys/time.h or time.h... time.h >checking whether getpgrp requires zero arguments... yes >checking for strftime... yes >checking for fork... yes >checking for vfork... yes >checking for vprintf... yes >checking for working fork... yes >checking for working vfork... (cached) yes >checking for strdup... yes >checking for strstr... yes >checking for strchr... yes >checking for erand48... yes >checking for memmove... yes >checking for socket in -lc... yes >checking for main in -lm... yes >checking if docroot is given... no >checking if gcc profiling is selected... no >checking for Java JNI... no >checking for Java JNI OS... no >checking for authorisation type... no >checking for threading type... no >checking whether to look for pdf support... no >checking if png driver is wanted... no >checking for large file support... yes >checking for x86_64-pc-linux-gnu-pkg-config... /usr/sbin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking for PLPLOT... no >checking for PLPLOT... yes >checking for purify... no >checking for cygwin... no >checking for savestats... no >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating emboss_acd/Makefile >config.status: creating emboss_doc/Makefile >config.status: creating emboss_doc/html/Makefile >config.status: creating emboss_doc/text/Makefile >config.status: creating src/config.h >config.status: executing depfiles commands >config.status: executing libtool commands >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650 ... >make -j4 >Making all in src >make[1]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/src' >make all-am >make[2]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/src' >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/plplot -I/usr/include/emboss -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -pipe -march=native -fno-diagnostics-color -O2 -O2 -c -o libgen.o libgen.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/plplot -I/usr/include/emboss -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -pipe -march=native -fno-diagnostics-color -O2 -O2 -c -o matgen3d.o matgen3d.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/plplot -I/usr/include/emboss -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -pipe -march=native -fno-diagnostics-color -O2 -O2 -c -o rocplot.o rocplot.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/plplot -I/usr/include/emboss -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -pipe -march=native -fno-diagnostics-color -O2 -O2 -c -o rocon.o rocon.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/plplot -I/usr/include/emboss -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -pipe -march=native -fno-diagnostics-color -O2 -O2 -c -o siggen.o siggen.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/plplot -I/usr/include/emboss -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -pipe -march=native -fno-diagnostics-color -O2 -O2 -c -o siggenlig.o siggenlig.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/plplot -I/usr/include/emboss -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -pipe -march=native -fno-diagnostics-color -O2 -O2 -c -o sigscan.o sigscan.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/usr/include -I/usr/include/plplot -I/usr/include/emboss -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -pipe -march=native -fno-diagnostics-color -O2 -O2 -c -o sigscanlig.o sigscanlig.c >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libgen libgen.o -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o matgen3d matgen3d.o -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >libtool: link: x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o libgen libgen.o -Wl,--as-needed -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >libtool: link: x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o matgen3d matgen3d.o -Wl,--as-needed -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o rocplot rocplot.o -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o rocon rocon.o -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >libtool: link: x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o rocplot rocplot.o -Wl,--as-needed -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o siggenlig siggenlig.o -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >libtool: link: x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o rocon rocon.o -Wl,--as-needed -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o sigscan sigscan.o -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >libtool: link: x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o siggenlig siggenlig.o -Wl,--as-needed -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o sigscanlig sigscanlig.o -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >libtool: link: x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o sigscan sigscan.o -Wl,--as-needed -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >libtool: link: x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o sigscanlig sigscanlig.o -Wl,--as-needed -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o siggen siggen.o -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >libtool: link: x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -O2 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o siggen siggen.o -Wl,--as-needed -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm >make[2]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/src' >make[1]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/src' >Making all in emboss_acd >make[1]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_acd' >make[1]: Nothing to be done for 'all'. >make[1]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_acd' >Making all in emboss_doc >make[1]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc' >Making all in html >make[2]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc/html' >make[2]: Nothing to be done for 'all'. >make[2]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc/html' >Making all in text >make[2]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc/text' >make[2]: Nothing to be done for 'all'. >make[2]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc/text' >make[2]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc' >make[2]: Nothing to be done for 'all-am'. >make[2]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc' >make[1]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc' >make[1]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650' >make[1]: Nothing to be done for 'all-am'. >make[1]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650' >>>> Source compiled. >>>> Test phase [not enabled]: sci-biology/embassy-signature-0.1.660-r1 > >>>> Install sci-biology/embassy-signature-0.1.660-r1 into /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image >make -j4 DESTDIR=/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image install >Making install in src >make[1]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/src' >make[2]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/src' >make[2]: Nothing to be done for 'install-data-am'. > /usr/sbin/mkdir -p '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/bin' > /bin/sh ../libtool --mode=install /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c libgen matgen3d rocplot rocon siggen siggenlig sigscan sigscanlig '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/bin' >libtool: install: /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c libgen /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/bin/libgen >libtool: install: /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c matgen3d /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/bin/matgen3d >libtool: install: /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c rocplot /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/bin/rocplot >libtool: install: /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c rocon /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/bin/rocon >libtool: install: /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c siggen /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/bin/siggen >libtool: install: /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c siggenlig /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/bin/siggenlig >libtool: install: /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c sigscan /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/bin/sigscan >libtool: install: /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c sigscanlig /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/bin/sigscanlig >make[2]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/src' >make[1]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/src' >Making install in emboss_acd >make[1]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_acd' >make[2]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_acd' >make[2]: Nothing to be done for 'install-exec-am'. > /usr/sbin/mkdir -p '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/share/EMBOSS/acd' > /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c -m 644 libgen.acd matgen3d.acd rocplot.acd rocon.acd siggen.acd siggenlig.acd sigscan.acd sigscanlig.acd '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/share/EMBOSS/acd' >make[2]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_acd' >make[1]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_acd' >Making install in emboss_doc >make[1]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc' >Making install in html >make[2]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc/html' >make[3]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc/html' >make[3]: Nothing to be done for 'install-exec-am'. > /usr/sbin/mkdir -p '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/share/EMBOSS/doc/html/embassy/signature' > /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c -m 644 index.html libgen.html matgen3d.html rocon.html rocplot.html siggen.html siggenlig.html sigscan.html sigscanlig.html '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/share/EMBOSS/doc/html/embassy/signature' >make[3]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc/html' >make[2]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc/html' >Making install in text >make[2]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc/text' >make[3]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc/text' >make[3]: Nothing to be done for 'install-exec-am'. > /usr/sbin/mkdir -p '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/share/EMBOSS/doc/programs/text' > /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c -m 644 libgen.txt matgen3d.txt rocon.txt rocplot.txt siggen.txt siggenlig.txt sigscan.txt sigscanlig.txt '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image/usr/share/EMBOSS/doc/programs/text' >make[3]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc/text' >make[2]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc/text' >make[2]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc' >make[3]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc' >make[3]: Nothing to be done for 'install-exec-am'. >make[3]: Nothing to be done for 'install-data-am'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc' >make[2]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc' >make[1]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650/emboss_doc' >make[1]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650' >make[2]: Entering directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650' >make[2]: Nothing to be done for 'install-exec-am'. >make[2]: Nothing to be done for 'install-data-am'. >make[2]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650' >make[1]: Leaving directory '/var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/work/SIGNATURE-0.1.650' >>>> Completed installing sci-biology/embassy-signature-0.1.660-r1 into /var/tmp/portage/sci-biology/embassy-signature-0.1.660-r1/image > > * Final size of build directory: 8120 KiB (7.9 MiB) > * Final size of installed tree: 1072 KiB (1.0 MiB) > >strip: x86_64-pc-linux-gnu-strip --strip-unneeded -N __gentoo_check_ldflags__ -R .comment -R .GCC.command.line -R .note.gnu.gold-version > /usr/bin/libgen > /usr/bin/matgen3d > /usr/bin/rocon > /usr/bin/rocplot > /usr/bin/siggen > /usr/bin/siggenlig > /usr/bin/sigscan > /usr/bin/sigscanlig > * checking 34 files for package collisions > * This package will overwrite one or more files that may belong to other > * packages (see list below). You can use a command such as `portageq > * owners / <filename>` to identify the installed package that owns a > * file. If portageq reports that only one package owns a file then do > * NOT file a bug report. A bug report is only useful if it identifies at > * least two or more packages that are known to install the same file(s). > * If a collision occurs and you can not explain where the file came from > * then you should simply ignore the collision since there is not enough > * information to determine if a real problem exists. Please do NOT file > * a bug report at https://bugs.gentoo.org/ unless you report exactly > * which two packages install the same file(s). See > * https://wiki.gentoo.org/wiki/Knowledge_Base:Blockers for tips on how > * to solve the problem. And once again, please do NOT file a bug report > * unless you have completely understood the above message. > * > * Detected file collision(s): > * > * /usr/bin/siggen > * > * Searching all installed packages for file collisions... > * > * Press Ctrl-C to Stop > * > * app-admin/tripwire-2.4.3.7:0::gentoo > * /usr/sbin/siggen > * > * Package 'sci-biology/embassy-signature-0.1.660-r1' NOT merged due to > * file collisions. If necessary, refer to your elog messages for the > * whole content of the above message.
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