Go to:
Gentoo Home
Documentation
Forums
Lists
Bugs
Planet
Store
Wiki
Get Gentoo!
Gentoo's Bugzilla – Attachment 842785 Details for
Bug 886105
sci-chemistry/mdtraj-1.9.7 fails to compile (CLANG-STRICTER-SYSTEM): tng_io.c:1064:57: error: incompatible function pointer types assigning to tng_function_status ()(const tng_trajectory_t, int32_t ) (aka tng_function_status ()(struct tng_trajectory cons
Home
|
New
–
[Ex]
|
Browse
|
Search
|
Privacy Policy
|
[?]
|
Reports
|
Requests
|
Help
|
New Account
|
Log In
[x]
|
Forgot Password
Login:
[x]
build.log
build.log (text/plain), 129.32 KB, created by
Agostino Sarubbo
on 2022-12-15 09:34:06 UTC
(
hide
)
Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2022-12-15 09:34:06 UTC
Size:
129.32 KB
patch
obsolete
> * Package: sci-chemistry/mdtraj-1.9.7:0 > * Repository: gentoo > * Maintainer: sci@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/71d1f6f160a106b4da17e0a396f375ebaa2c5dc0 (Thu Dec 15 08:02:04 UTC 2022) >@@@@@ END @@@@@ > > > >################## ># emerge --info: # >################## >Portage 3.0.41 (python 3.10.9-final-0, default/linux/amd64/17.1, gcc-12, glibc-2.36-r6, 5.15.77-gentoo-dist x86_64) >================================================================= >System uname: Linux-5.15.77-gentoo-dist-x86_64-AMD_EPYC_7513_32-Core_Processor-with-glibc2.36 >KiB Mem: 263533016 total, 196900004 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Thu, 15 Dec 2022 08:02:04 +0000 >sh bash 5.2_p15 >ld GNU ld (Gentoo 2.39 p5) 2.39.0 >app-misc/pax-utils: 1.3.5::gentoo >app-shells/bash: 5.2_p15::gentoo >dev-lang/perl: 5.36.0-r1::gentoo >dev-lang/python: 3.8.16::gentoo, 3.9.16::gentoo, 3.10.9::gentoo, 3.11.1::gentoo >dev-util/cmake: 3.25.1::gentoo >dev-util/meson: 0.64.1::gentoo >sys-apps/baselayout: 2.9::gentoo >sys-apps/openrc: 0.45.2-r2::gentoo >sys-apps/sandbox: 2.29::gentoo >sys-devel/autoconf: 2.71-r5::gentoo >sys-devel/automake: 1.16.5::gentoo >sys-devel/binutils: 2.39-r4::gentoo >sys-devel/binutils-config: 5.4.1::gentoo >sys-devel/clang: 15.0.6::gentoo >sys-devel/gcc: 12.2.1_p20221210::gentoo >sys-devel/gcc-config: 2.8::gentoo >sys-devel/libtool: 2.4.7-r1::gentoo >sys-devel/llvm: 15.0.6::gentoo >sys-devel/make: 4.4::gentoo >sys-kernel/linux-headers: 6.0::gentoo (virtual/os-headers) >sys-libs/glibc: 2.36-r6::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-extra-opts: > sync-rsync-verify-max-age: 24 > sync-rsync-verify-jobs: 1 > sync-rsync-verify-metamanifest: yes > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* LGPL-2.1+" >CBUILD="x86_64-pc-linux-gnu" >CC="clang" >CFLAGS="-O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXX="clang++" >CXXFLAGS="-O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types" >DISTDIR="/var/tmp/portage/sci-chemistry/mdtraj-1.9.7/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" >FCFLAGS="-O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types" >GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" >LANG="C.UTF8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >LEX="flex" >MAKEOPTS="-j16" >PKGDIR="/root/tbci/binpkg" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >SHELL="/bin/bash" >USE="acl amd64 bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl test-rust unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" PYTHON_TARGETS="python3_8 python3_9 python3_10" USERLAND="GNU" >Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS > > > > > >############################## ># emerge history (qlop -mv): # >############################## >2022-12-15T09:59:29 >>> sci-libs/suitesparseconfig-5.4.0 >2022-12-15T09:59:30 >>> dev-util/b2-4.9.3 >2022-12-15T09:59:31 >>> dev-util/patchelf-0.17.0 >2022-12-15T09:59:32 >>> app-arch/lz4-1.9.4 >2022-12-15T09:59:33 >>> dev-cpp/eigen-3.4.0-r1 >2022-12-15T09:59:34 >>> media-libs/libjpeg-turbo-2.1.4 >2022-12-15T09:59:35 >>> sci-libs/metis-5.1.0-r5 >2022-12-15T09:59:36 >>> app-arch/snappy-1.1.9-r1 >2022-12-15T09:59:38 >>> virtual/fortran-0-r1 >2022-12-15T09:59:39 >>> dev-python/gast-0.5.3-r1 >2022-12-15T09:59:37 >>> dev-lang/swig-4.1.1 >2022-12-15T09:59:40 >>> dev-python/ply-3.11-r2 >2022-12-15T09:59:42 >>> dev-python/olefile-0.46-r2 >2022-12-15T09:59:41 >>> dev-python/pyproject-metadata-0.6.1 >2022-12-15T09:59:44 >>> dev-python/python-dateutil-2.8.2-r1 >2022-12-15T09:59:45 >>> dev-python/pytz-2022.6 >2022-12-15T09:59:46 >>> dev-lang/nasm-2.15.05 >2022-12-15T09:59:47 >>> dev-python/astunparse-1.6.3 >2022-12-15T09:59:47 >>> dev-python/astor-0.8.1-r1 >2022-12-15T09:59:50 >>> sci-libs/colamd-2.9.6 >2022-12-15T09:59:52 >>> sci-libs/camd-2.4.6-r1 >2022-12-15T09:59:51 >>> sci-libs/ccolamd-2.9.6 >2022-12-15T09:59:48 >>> dev-python/networkx-2.8.8 >2022-12-15T09:59:57 >>> dev-libs/boost-1.80.0-r1 >2022-12-15T10:00:04 >>> dev-python/pybind11-2.10.1 >2022-12-15T10:00:12 >>> dev-libs/c-blosc-1.21.2 >2022-12-15T10:00:14 >>> sci-libs/lapack-3.11 >2022-12-15T10:00:15 >>> sci-libs/amd-2.4.6-r1 >2022-12-15T10:00:18 >>> sci-libs/hdf5-1.12.2-r5 >2022-12-15T10:00:20 >>> dev-python/beniget-0.4.1-r1 >2022-12-15T10:00:28 >>> dev-python/meson-python-0.11.0 >2022-12-15T10:00:35 >>> dev-python/pillow-9.3.0 >2022-12-15T10:01:02 >>> virtual/blas-3.8 >2022-12-15T10:01:00 >>> virtual/lapack-3.10 >2022-12-15T10:01:01 >>> virtual/cblas-3.8 >2022-12-15T10:01:14 >>> sci-libs/arpack-3.8.0 >2022-12-15T10:01:13 >>> sci-libs/cholmod-3.0.14 >2022-12-15T10:01:15 >>> dev-python/numpy-1.23.5 >2022-12-15T10:01:20 >>> sci-libs/umfpack-5.7.9 >2022-12-15T10:01:24 >>> dev-python/pythran-0.12.0-r2 >2022-12-15T10:01:25 >>> dev-python/bottleneck-1.3.5 >2022-12-15T10:01:23 >>> dev-python/numexpr-2.8.4 >2022-12-15T10:01:33 >>> dev-python/scipy-1.9.3 >2022-12-15T10:01:37 >>> dev-python/pandas-1.5.2 >2022-12-15T10:01:38 >>> dev-python/pytables-3.7.0 >2022-12-15T10:03:03 >>> sci-chemistry/mdtraj-1.9.7 > > > > >####################################### ># installed packages (qlist -ICvUSS): # >####################################### >acct-group/audio-0-r1:0 >acct-group/cdrom-0-r1:0 >acct-group/dialout-0-r1:0 >acct-group/disk-0-r1:0 >acct-group/input-0-r1:0 >acct-group/kmem-0-r1:0 >acct-group/kvm-0-r1:0 >acct-group/lp-0-r1:0 >acct-group/man-0-r1:0 >acct-group/messagebus-0-r1:0 >acct-group/polkitd-0-r1:0 >acct-group/portage-0:0 >acct-group/render-0-r1:0 >acct-group/sgx-0:0 >acct-group/sshd-0-r1:0 >acct-group/tape-0-r1:0 >acct-group/tty-0-r1:0 >acct-group/video-0-r1:0 >acct-user/man-1-r1:0 >acct-user/messagebus-0-r1:0 >acct-user/polkitd-0-r1:0 >acct-user/portage-0:0 >acct-user/sshd-0-r1:0 >app-admin/eselect-1.4.20:0 -doc -emacs -vim-syntax >app-admin/perl-cleaner-2.30:0 >app-alternatives/awk-3:0 -busybox gawk -mawk -nawk split-usr >app-alternatives/bc-0:0 -gh gnu >app-alternatives/bzip2-1:0 -lbzip2 -pbzip2 reference split-usr >app-alternatives/gzip-0:0 -pigz reference split-usr >app-alternatives/lex-0-r1:0 flex -reflex >app-alternatives/tar-0:0 gnu -libarchive split-usr >app-alternatives/yacc-1-r2:0 bison -byacc -reference >app-arch/bzip2-1.0.8-r4:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs -verify-sig >app-arch/gzip-1.12-r3:0 -pic -static -verify-sig >app-arch/libarchive-3.6.1-r1:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd >app-arch/lz4-1.9.4:0/r132 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >app-arch/snappy-1.1.9-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -test >app-arch/tar-1.34-r2:0 acl -minimal nls -selinux -verify-sig xattr >app-arch/unzip-6.0_p27-r1:0 bzip2 -natspec unicode >app-arch/xz-utils-5.4.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 extra-filters nls split-usr -static-libs -verify-sig >app-arch/zstd-1.5.2-r3:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 split-usr -static-libs >app-crypt/gnupg-2.3.8:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server >app-crypt/gpgme-1.18.0-r2:1/11.6.15.1 -common-lisp cxx -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -qt5 -static-libs -test -verify-sig >app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs >app-crypt/pinentry-1.2.1-r1:0 -caps -efl -emacs -gnome-keyring -gtk ncurses -qt5 -verify-sig >app-crypt/rhash-1.4.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls ssl -static-libs >app-editors/nano-7.1:0 -debug -justify -magic -minimal ncurses nls spell -static unicode >app-eselect/eselect-fontconfig-20220403:0 >app-eselect/eselect-iptables-20220320:0 >app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0 >app-eselect/eselect-pinentry-0.7.2:0 >app-i18n/man-pages-ja-20180315-r1:0 >app-i18n/man-pages-l10n-4.14.0-r1:0 l10n_cs l10n_da l10n_de l10n_el l10n_es l10n_fi l10n_fr l10n_hu l10n_id l10n_it l10n_mk l10n_nb l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_sr l10n_sv l10n_uk l10n_vi >app-i18n/man-pages-ru-5.03.2390.2390.20191017-r1:0 >app-i18n/man-pages-zh_CN-1.6.3.6:0 >app-misc/c_rehash-1.7-r1:0 >app-misc/ca-certificates-20211016.3.86:0 -cacert >app-misc/editor-wrapper-4-r1:0 >app-misc/mime-types-2.1.53:0 -nginx >app-misc/pax-utils-1.3.5:0 -caps man -python python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_8 -python_single_target_python3_9 seccomp -test >app-misc/tmux-3.3a-r1:0 -debug -selinux -systemd -utempter -vim-syntax >app-portage/eix-0.36.5:0 -debug -doc nls -sqlite >app-portage/elt-patches-20221210:0 >app-portage/gemato-17.0:0 gpg -pretty-log python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test -tools >app-portage/gentoolkit-0.6.1-r3:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >app-portage/portage-utils-0.94.4:0 openmp qmanifest qtegrity -static >app-shells/bash-5.2_p15:0 -afs -bashlogger -examples -mem-scramble net nls -pgo -plugins readline -verify-sig >app-shells/bash-completion-2.11:0 eselect -test >app-shells/gentoo-bashcomp-20190211-r1:0 >app-shells/push-3.4:0 >app-shells/quoter-4.2:0 >app-text/ansifilter-2.18:0 -qt5 >app-text/build-docbook-catalog-2.3-r1:0 >app-text/docbook-xml-dtd-4.5-r2:4.5 >app-text/docbook-xml-dtd-4.4-r3:4.4 >app-text/docbook-xml-dtd-4.2-r3:4.2 >app-text/docbook-xml-dtd-4.1.2-r7:4.1.2 >app-text/docbook-xsl-stylesheets-1.79.1-r3:0 -ruby >app-text/manpager-1:0 >app-text/opensp-1.5.2-r9:0 -doc nls -static-libs -test >app-text/po4a-0.68:0 -test -test >app-text/sgml-common-0.6.3-r7:0 >app-text/xmlto-0.0.28-r10:0 -latex text >dev-cpp/eigen-3.4.0-r1:3 -cpu_flags_arm_neon -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx -cuda -debug -doc openmp -test >dev-db/sqlite-3.40.0:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools >dev-lang/duktape-2.7.0-r3:0/2.7.0 >dev-lang/nasm-2.15.05:0 -doc >dev-lang/perl-5.36.0-r1:0/5.36 -berkdb -debug -doc gdbm ithreads -minimal -quadmath >dev-lang/python-3.11.1:3.11 -bluetooth -build ensurepip -examples gdbm -hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig >dev-lang/python-3.10.9:3.10 -bluetooth -build ensurepip -examples gdbm -hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig xml >dev-lang/python-3.9.16:3.9 -bluetooth -build ensurepip -examples gdbm -hardened -lto ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig xml >dev-lang/python-3.8.16:3.8 -bluetooth -build ensurepip -examples gdbm -hardened -lto ncurses -pgo readline sqlite ssl -test -tk -valgrind -verify-sig -wininst xml >dev-lang/python-exec-2.4.9:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-lang/python-exec-conf-2.4.6:2 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >dev-lang/swig-4.1.1:0 -ccache -doc pcre -test >dev-lang/tcl-8.6.13:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug threads >dev-libs/boehm-gc-8.2.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx large -static-libs threads >dev-libs/boost-1.80.0-r1:0/1.80.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -context -debug -doc -icu -lzma -mpi nls -numpy python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -tools zlib -zstd >dev-libs/c-blosc-1.21.2:0/1 lz4 snappy -test zlib -zstd >dev-libs/elfutils-0.188:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma nls -static-libs -test utils -valgrind -verify-sig -zstd >dev-libs/expat-2.5.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs unicode >dev-libs/glib-2.74.3-r2:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus -debug elf -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr >dev-libs/gmp-6.2.1-r5:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpudetection cxx -doc -pic -static-libs >dev-libs/gobject-introspection-1.74.0:0 -doctool -gtk-doc python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_8 -python_single_target_python3_9 -test >dev-libs/gobject-introspection-common-1.74.0:0 >dev-libs/isl-0.24-r2:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/jsoncpp-1.9.5:0/25 -doc -test >dev-libs/libassuan-2.5.5:0 >dev-libs/libatomic_ops-7.6.14:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >dev-libs/libevent-2.1.12:0/2.1-7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 clock-gettime -debug -malloc-replacement ssl -static-libs -test threads -verbose-debug >dev-libs/libffi-3.4.4:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -exec-static-trampoline -pax-kernel -static-libs -test >dev-libs/libgcrypt-1.10.1-r3:0/20 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_padlock -cpu_flags_x86_sha cpu_flags_x86_sse4_1 -doc getentropy -static-libs -verify-sig >dev-libs/libgpg-error-1.46-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -common-lisp nls -static-libs -test -verify-sig >dev-libs/libksba-1.6.2:0 -static-libs -verify-sig >dev-libs/libltdl-2.4.7:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/libpcre2-10.42:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode -verify-sig zlib >dev-libs/libpipeline-1.5.7:0 -test >dev-libs/libtasn1-4.19.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test -valgrind -verify-sig >dev-libs/libunistring-1.1-r1:0/5 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs >dev-libs/libuv-1.44.2-r1:0/1 >dev-libs/libxml2-2.10.3-r1:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -examples ftp -icu -lzma python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 readline -static-libs -test >dev-libs/libxslt-1.1.37-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 crypt -debug -examples -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -static-libs >dev-libs/lzo-2.10:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples split-usr -static-libs >dev-libs/mpc-1.3.1_rc1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/mpfr-4.1.1_p1:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/nettle-3.8.1:0/8-6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec cpu_flags_x86_aes cpu_flags_x86_pclmul -cpu_flags_x86_sha -doc gmp -static-libs -verify-sig >dev-libs/npth-1.6-r1:0 -test >dev-libs/openssl-3.0.7-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpu_flags_x86_sse2 -fips -ktls -rfc3779 -sctp -static-libs -test -tls-compression -vanilla -verify-sig -verify-sig -weak-ssl-ciphers >dev-libs/popt-1.19:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs >dev-perl/Clone-0.460.0:0 -test >dev-perl/Devel-CheckLib-1.160.0:0 -test >dev-perl/Encode-EUCJPASCII-0.30.0-r1:0 -test >dev-perl/Encode-HanExtra-0.230.0-r3:0 >dev-perl/Encode-Locale-1.50.0-r1:0 -test >dev-perl/ExtUtils-CChecker-0.110.0:0 -test >dev-perl/File-BaseDir-0.90.0:0 -test >dev-perl/File-DesktopEntry-0.220.0-r1:0 -test >dev-perl/File-Listing-6.150.0:0 -test -test >dev-perl/File-MimeInfo-0.300.0:0 -test >dev-perl/HTML-Parser-3.760.0:0 -test >dev-perl/HTML-Tagset-3.200.0-r2:0 >dev-perl/HTTP-Cookies-6.100.0:0 -test >dev-perl/HTTP-Date-6.50.0:0 >dev-perl/HTTP-Message-6.440.0:0 -test -test >dev-perl/HTTP-Negotiate-6.10.0-r2:0 -test >dev-perl/IO-HTML-1.4.0:0 -test >dev-perl/IO-Socket-INET6-2.720.0-r2:0 -test >dev-perl/IO-Socket-SSL-2.78.0:0 -examples -idn -test >dev-perl/IPC-System-Simple-1.300.0:0 -test >dev-perl/libwww-perl-6.600.0-r1:0 ssl -test >dev-perl/Locale-gettext-1.70.0-r1:0 -test >dev-perl/LWP-MediaTypes-6.40.0:0 -test >dev-perl/LWP-Protocol-https-6.100.0:0 -test >dev-perl/MIME-Charset-1.12.2-r1:0 l10n_ja l10n_zh -test >dev-perl/Module-Build-0.423.100:0 -test >dev-perl/Mozilla-CA-20999999-r1:0 -test >dev-perl/Net-HTTP-6.210.0:0 -minimal -test >dev-perl/Net-SSLeay-1.920.0:0 -examples -examples -minimal -test >dev-perl/Pod-Parser-1.630.0-r1:0 -test >dev-perl/SGMLSpm-1.1-r2:0 -test >dev-perl/Socket6-0.290.0:0 -test >dev-perl/Sub-Name-0.260.0:0 -suggested -test >dev-perl/Syntax-Keyword-Try-0.270.0:0 -test >dev-perl/TermReadKey-2.380.0-r1:0 -examples -test >dev-perl/Text-CharWidth-0.40.0-r2:0 -test >dev-perl/Text-WrapI18N-0.60.0-r2:0 -test >dev-perl/TimeDate-2.330.0-r1:0 -test >dev-perl/Try-Tiny-0.310.0:0 -minimal -test >dev-perl/Unicode-LineBreak-2019.1.0:0 >dev-perl/URI-5.110.0:0 -test >dev-perl/WWW-RobotRules-6.20.0-r2:0 -test >dev-perl/XML-Parser-2.460.0-r2:0 >dev-perl/XS-Parse-Keyword-0.250.0:0 -test >dev-perl/YAML-Tiny-1.730.0-r1:0 -minimal -test >dev-python/appdirs-1.4.4-r2:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >dev-python/astor-0.8.1-r1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/astunparse-1.6.3:0 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/autocommand-2.2.2:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/beniget-0.4.1-r1:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/bottleneck-1.3.5:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/certifi-3021.3.16-r3:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/charset_normalizer-3.0.1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/cython-0.29.32:0 -doc -emacs python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/ensurepip-pip-22.3.1:0 >dev-python/ensurepip-setuptools-65.6.3:0 >dev-python/ensurepip-wheels-100:0 >dev-python/flit_core-3.8.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/gast-0.5.3-r1:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/gpep517-13:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/idna-3.4:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/importlib_metadata-5.1.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/importlib_resources-5.10.1:0 python_targets_pypy3 python_targets_python3_8 -test >dev-python/inflect-6.0.2:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/installer-0.6.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/jaraco-context-4.2.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/jaraco-functools-3.5.2:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/jaraco-text-3.11.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/jinja-3.1.2:0 -doc -examples python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/markupsafe-2.1.1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/meson-python-0.11.0:0 -doc python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/more-itertools-9.0.0:0 -doc python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/networkx-2.8.8:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test -test >dev-python/nspektr-0.4.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/numexpr-2.8.4:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >dev-python/numpy-1.23.5:0 -doc lapack python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/olefile-0.46-r2:0 -doc python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/ordered-set-4.1.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/packaging-21.3-r2:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/pandas-1.5.2:0 -X -doc -full-support -minimal python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/pillow-9.3.0:0 -examples -imagequant jpeg -jpeg2k -lcms python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test -test -tiff -tk -truetype -webp -xcb zlib >dev-python/ply-3.11-r2:0/3.11 -examples python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >dev-python/pybind11-2.10.1:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/pydantic-1.10.2:0 native-extensions python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/pyparsing-3.0.9:0 -examples python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/pyproject-metadata-0.6.1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/pypy3-7.3.10_p1:0/pypy39-pp73-336 ensurepip gdbm jit ncurses sqlite -tk >dev-python/pypy3-exe-bin-7.3.10:3.9-7.3.10 >dev-python/PySocks-1.7.1-r2:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >dev-python/pytables-3.7.0:0 -examples python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/python-dateutil-2.8.2-r1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/pythran-0.12.0-r2:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/pytz-2022.6:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >dev-python/requests-2.28.1-r1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -socks5 -test test-rust >dev-python/scipy-1.9.3:0 -doc fortran python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/setuptools-65.6.3:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/setuptools_scm-7.0.5:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/six-1.16.0-r1:0 -doc python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/tomli-2.0.1-r1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/typing-extensions-4.3.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >dev-python/urllib3-1.26.13:0 -brotli python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/wheel-0.38.4:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-python/zipp-3.11.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-util/b2-4.9.3:0 -examples >dev-util/checkbashisms-2.22.2:0 >dev-util/cmake-3.25.1:0 -doc -emacs ncurses -qt5 -test -test -verify-sig >dev-util/desktop-file-utils-0.26-r2:0 -emacs >dev-util/glib-utils-2.74.3:0 python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_8 -python_single_target_python3_9 >dev-util/gperf-3.1-r1:0 >dev-util/gtk-doc-am-1.33.2:0 >dev-util/intltool-0.51.0-r3:0 >dev-util/meson-0.64.1:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-util/meson-format-array-0:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >dev-util/ninja-1.11.1-r2:0 -doc -emacs -test >dev-util/patchelf-0.17.0:0 >dev-util/pkgconf-1.8.0-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -test >dev-util/re2c-2.2:0 -debug -test >dev-vcs/git-2.39.0:0 blksha1 -cgi curl -cvs -doc -gnome-keyring gpg -highlight iconv -mediawiki -mediawiki-experimental nls pcre -perforce -perl python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_8 -python_single_target_python3_9 safe-directory -selinux -subversion -test -tk webdav -xinetd >media-fonts/liberation-fonts-2.1.5:0 -X -X -fontforge >media-gfx/graphite2-1.3.14_p20210810-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -perl -test >media-libs/fontconfig-2.14.1-r1:1.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc nls -test >media-libs/freetype-2.12.1-r2:2 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adobe-cff -brotli bzip2 cleartype-hinting -debug -doc -fontforge harfbuzz -infinality png -static-libs -svg -utils >media-libs/harfbuzz-5.3.1-r1:0/4.0.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 cairo -debug -doc -experimental glib graphite -icu introspection -test truetype >media-libs/libjpeg-turbo-2.1.4:0/0.2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_neon -java -java -static-libs >media-libs/libpng-1.6.39:0/16 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -apng -cpu_flags_arm_neon cpu_flags_x86_sse -static-libs >net-dns/c-ares-1.18.1:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test >net-dns/libidn2-2.3.4:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs -verify-sig >net-firewall/iptables-1.8.8-r5:0/1.8.3 -conntrack -netlink -nftables -pcap split-usr -static-libs >net-libs/gnutls-3.7.8:0/30.30 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -brotli cxx -dane -doc -examples -guile idn nls openssl -pkcs11 seccomp -sslv2 -sslv3 -static-libs -test -test-full tls-heartbeat -tools -valgrind -verify-sig zlib -zstd >net-libs/libmnl-1.0.5:0/0.2.0 -examples -verify-sig >net-libs/libnsl-2.0.0-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >net-libs/libtirpc-1.3.3:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -kerberos split-usr -static-libs >net-libs/nghttp2-1.51.0:0/1.14 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx -debug -hpack-tools -jemalloc -static-libs -test -utils -xml >net-misc/curl-7.86.0-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adns -alt-svc -brotli -curl_ssl_gnutls -curl_ssl_mbedtls -curl_ssl_nss curl_ssl_openssl -curl_ssl_rustls ftp -gnutls -gopher -hsts http2 -idn imap ipv6 -kerberos -ldap -mbedtls -nghttp3 -nss openssl pop3 progress-meter -quiche -rtmp -rustls -samba smtp -ssh ssl -sslv3 -static-libs -telnet -test tftp -verify-sig -websockets -zstd >net-misc/dhcpcd-9.4.1:0 -debug embedded ipv6 -privsep udev >net-misc/iputils-20221126:0 arping -caps -clockdiff -doc filecaps -idn nls -test -tracepath >net-misc/netifrc-0.7.3-r1:0 dhcp >net-misc/openssh-9.1_p1:0 -X -X509 -abi_mips_n32 -audit -debug -hpn -kerberos -ldns -libedit -livecd pam pie -sctp -security-key -selinux ssl -static -test -verify-sig -xmss >net-misc/rsync-3.2.7-r1:0 acl -examples iconv -lz4 python_single_target_python3_10 -python_single_target_python3_8 -python_single_target_python3_9 -rrsync ssl -stunnel -system-zlib -verify-sig xattr -xxhash -zstd >net-misc/wget-1.21.3-r1:0 -cookie-check -debug -gnutls -idn ipv6 -metalink nls -ntlm pcre ssl -static -test -uuid -verify-sig zlib >perl-core/Compress-Raw-Zlib-2.202.0:0 >perl-core/File-Temp-0.231.100:0 >sci-chemistry/mdtraj-1.9.7:0 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >sci-libs/amd-2.4.6-r1:0 -doc fortran >sci-libs/arpack-3.8.0:0 -doc -examples -mpi >sci-libs/camd-2.4.6-r1:0 -doc >sci-libs/ccolamd-2.9.6:0 >sci-libs/cholmod-3.0.14:0 -cuda -doc lapack matrixops modify partition >sci-libs/colamd-2.9.6:0 >sci-libs/hdf5-1.12.2-r5:0/1.12.2 cxx -debug -examples fortran hl -mpi -szip -threads -unsupported zlib >sci-libs/lapack-3.11:0 -deprecated -doc -eselect-ldso -lapacke -test >sci-libs/metis-5.1.0-r5:0 -doc -double-precision -examples -int64 openmp >sci-libs/suitesparseconfig-5.4.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >sci-libs/umfpack-5.7.9:0 cholmod -doc >sec-keys/openpgp-keys-gentoo-release-20220101:0 -test >sys-apps/acl-2.3.1-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls split-usr -static-libs >sys-apps/attr-2.5.1-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls split-usr -static-libs >sys-apps/baselayout-2.9:0 -build split-usr >sys-apps/coreutils-9.1-r2:0 acl -caps -gmp -hostname -kill -multicall nls openssl -selinux split-usr -static -test -vanilla -verify-sig xattr >sys-apps/dbus-1.15.2:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc elogind -selinux -static-libs -systemd -test -test >sys-apps/debianutils-5.7:0 installkernel -static >sys-apps/diffutils-3.8:0 nls -static -verify-sig >sys-apps/file-5.43-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -seccomp -static-libs -verify-sig zlib >sys-apps/findutils-4.9.0-r2:0 nls -selinux -static -test -verify-sig >sys-apps/gawk-5.2.1:0 -mpfr nls -pma readline -verify-sig >sys-apps/gentoo-functions-0.17:0 >sys-apps/grep-3.8-r1:0 egrep-fgrep nls pcre -static -verify-sig >sys-apps/groff-1.22.4:0 -X -examples -uchardet >sys-apps/help2man-1.49.2:0 nls >sys-apps/install-xattr-0.8:0 >sys-apps/iproute2-6.1.0:0 -atm -berkdb -bpf -caps -elf iptables -libbsd -minimal -nfs -selinux split-usr >sys-apps/kbd-2.5.1:0 nls pam -test >sys-apps/kmod-30:0 -debug -doc lzma -pkcs7 -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs tools zlib zstd >sys-apps/less-608-r1:0 pcre unicode >sys-apps/man-db-2.11.1:0 manpager nls seccomp -selinux -static-libs zlib >sys-apps/man-pages-6.01:0 l10n_cs l10n_da l10n_de l10n_el l10n_es l10n_fi l10n_fr l10n_hu l10n_id l10n_it l10n_ja l10n_mk l10n_nb l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_ru l10n_sr l10n_sv l10n_uk l10n_vi l10n_zh-CN >sys-apps/miscfiles-1.5-r4:0 -minimal >sys-apps/net-tools-2.10:0 arp hostname ipv6 -nis nls -plipconfig -selinux -slattach -static >sys-apps/openrc-0.45.2-r2:0 -audit -bash -debug ncurses netifrc -newnet pam -selinux -sysv-utils unicode >sys-apps/portage-3.0.41:0 -apidoc -build -doc -gentoo-dev ipc native-extensions python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 rsync-verify -selinux -test xattr >sys-apps/sandbox-2.29:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 nnp >sys-apps/sed-4.9:0 acl nls -selinux -static -verify-sig >sys-apps/shadow-4.13-r1:0/4 acl -audit -bcrypt -cracklib nls pam -selinux -skey split-usr -su -verify-sig xattr >sys-apps/systemd-utils-251.9:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -boot kmod -selinux split-usr -split-usr -sysusers -test tmpfiles udev >sys-apps/sysvinit-3.05:0 -ibm nls -selinux -static -verify-sig >sys-apps/texinfo-7.0.1:0 nls standalone -static >sys-apps/util-linux-2.38.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -build -caps cramfs -cryptsetup -fdformat hardlink -kill logger -magic ncurses nls pam -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 readline -rtas -selinux -slang split-usr -static-libs su suid -systemd -test -tty-helpers -udev unicode -verify-sig >sys-apps/which-2.21:0 >sys-auth/elogind-246.10-r2:0 acl -audit cgroup-hybrid -debug -doc pam policykit -selinux -test >sys-auth/pambase-20220214:0 -caps -debug elogind -gnome-keyring -homed -minimal -mktemp nullok -pam_krb5 -pam_ssh passwdqc -pwhistory -pwquality -securetty -selinux sha512 -systemd -yescrypt >sys-auth/passwdqc-2.0.2-r1:0 >sys-auth/polkit-122:0 daemon duktape -examples -gtk introspection -kde pam -selinux -systemd -test >sys-devel/autoconf-2.71-r5:2.71 -emacs >sys-devel/autoconf-archive-2022.09.03:0 >sys-devel/autoconf-wrapper-20221207:0 >sys-devel/automake-1.16.5:1.16 -test >sys-devel/automake-wrapper-11-r1:0 >sys-devel/bc-1.07.1-r6:0 -libedit readline -static >sys-devel/binutils-2.39-r4:2.39 -cet -default-gold -doc -gold -gprofng -multitarget nls -pgo plugins -static-libs -test -vanilla >sys-devel/binutils-config-5.4.1:0 native-symlinks >sys-devel/bison-3.8.2-r2:0 -examples nls -static -test -verify-sig >sys-devel/clang-15.0.6:15/15 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -doc extra llvm_targets_AArch64 llvm_targets_AMDGPU -llvm_targets_ARC llvm_targets_ARM llvm_targets_AVR llvm_targets_BPF -llvm_targets_CSKY -llvm_targets_DirectX llvm_targets_Hexagon llvm_targets_Lanai -llvm_targets_LoongArch -llvm_targets_M68k llvm_targets_MSP430 llvm_targets_Mips llvm_targets_NVPTX llvm_targets_PowerPC llvm_targets_RISCV -llvm_targets_SPIRV llvm_targets_Sparc llvm_targets_SystemZ llvm_targets_VE llvm_targets_WebAssembly llvm_targets_X86 llvm_targets_XCore pie python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_8 -python_single_target_python3_9 static-analyzer -test -test -verify-sig -xml >sys-devel/clang-common-15.0.6:0 -default-compiler-rt -default-libcxx -default-lld -llvm-libunwind -stricter -verify-sig >sys-devel/clang-runtime-15.0.6:15.0.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 compiler-rt -libcxx openmp sanitize >sys-devel/clang-toolchain-symlinks-15-r2:15 -gcc-symlinks -multilib-symlinks native-symlinks >sys-devel/flex-2.6.4-r5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static -test >sys-devel/gcc-12.2.1_p20221210:12 -ada -cet -custom-cflags cxx -d -debug -default-stack-clash-protection -default-znow -doc -fixed-point fortran -go graphite -hardened -ieee-long-double -jit -libssp lto multilib nls nptl -objc -objc++ -objc-gc openmp -pch -pgo pie sanitize ssp -systemtap -test -valgrind -vanilla -vtv -zstd >sys-devel/gcc-config-2.8:0 cc-wrappers native-symlinks >sys-devel/gettext-0.21.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -cvs cxx -doc -emacs -git -java -java ncurses nls openmp -static-libs -verify-sig >sys-devel/gnuconfig-20221007:0 >sys-devel/libtool-2.4.7-r1:2 -vanilla >sys-devel/llvm-15.0.6:15/15 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 binutils-plugin -debug -doc -doc -exegesis -libedit libffi llvm_targets_AArch64 llvm_targets_AMDGPU -llvm_targets_ARC llvm_targets_ARM llvm_targets_AVR llvm_targets_BPF -llvm_targets_CSKY -llvm_targets_DirectX llvm_targets_Hexagon llvm_targets_Lanai -llvm_targets_LoongArch -llvm_targets_M68k llvm_targets_MSP430 llvm_targets_Mips llvm_targets_NVPTX llvm_targets_PowerPC llvm_targets_RISCV -llvm_targets_SPIRV llvm_targets_Sparc llvm_targets_SystemZ llvm_targets_VE llvm_targets_WebAssembly llvm_targets_X86 llvm_targets_XCore ncurses -test -verify-sig -xar -xml -z3 -zstd >sys-devel/llvm-common-15.0.6:0 -verify-sig >sys-devel/llvm-toolchain-symlinks-15-r1:15 -multilib-symlinks native-symlinks >sys-devel/llvmgold-15:0 >sys-devel/m4-1.4.19:0 -examples nls -verify-sig >sys-devel/make-4.4:0 -guile nls -static -verify-sig >sys-devel/patch-2.7.6-r5:0 -static -test -verify-sig xattr >sys-fs/e2fsprogs-1.46.5-r4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse -lto nls split-usr -static-libs -test tools >sys-fs/udev-init-scripts-35:0 >sys-kernel/installkernel-gentoo-5:0 -grub >sys-kernel/linux-headers-6.0:0 -headers-only >sys-libs/binutils-libs-2.39-r4:0/2.39 -64-bit-bfd -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cet -multitarget nls -static-libs >sys-libs/compiler-rt-15.0.6:15.0.6 abi_x86_32 abi_x86_64 clang -debug -test -verify-sig >sys-libs/compiler-rt-sanitizers-15.0.6:15.0.6 abi_x86_32 abi_x86_64 asan cfi clang -debug dfsan gwp-asan hwasan libfuzzer lsan memprof msan orc profile safestack scudo -shadowcallstack -test -test tsan ubsan -verify-sig xray >sys-libs/gdbm-1.23:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs -test -verify-sig >sys-libs/glibc-2.36-r6:2.2 -audit -caps -cet -compile-locales -crypt -custom-cflags -doc -gd -hash-sysv-compat -headers-only multiarch multilib -multilib-bootstrap -nscd -profile -selinux ssp stack-realign static-libs -suid -systemd -systemtap -test -vanilla >sys-libs/libcap-2.66:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam split-usr -static-libs -tools >sys-libs/libomp-15.0.6:0/15 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -hwloc -llvm_targets_AMDGPU -llvm_targets_NVPTX -offload -ompt -test -verify-sig >sys-libs/libseccomp-2.5.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -experimental-loong -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs -test >sys-libs/libxcrypt-4.4.33:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 compat -headers-only split-usr -static-libs system -test >sys-libs/ncurses-6.3_p20221203:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx -debug -doc -gpm -minimal -profile split-usr -split-usr stack-realign -static-libs -test tinfo -trace -verify-sig >sys-libs/pam-1.5.2-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug filecaps -nis -selinux split-usr >sys-libs/readline-8.2_p1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static-libs unicode -utils -verify-sig >sys-libs/timezone-data-2022g:0 -leaps-timezone nls -zic-slim >sys-libs/zlib-1.2.13-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs -verify-sig >sys-process/procps-3.3.17-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode >sys-process/psmisc-23.6:0 -X -apparmor nls -selinux -test >virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/blas-3.8:0 -eselect-ldso >virtual/cblas-3.8:0 -eselect-ldso >virtual/dev-manager-0-r2:0 >virtual/editor-0-r4:0 >virtual/fortran-0-r1:0 openmp >virtual/lapack-3.10:0 -eselect-ldso >virtual/libc-1-r1:0 >virtual/libcrypt-2-r1:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/libelf-3-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libudev-232-r7:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd >virtual/man-0-r4:0 >virtual/os-headers-0-r2:0 >virtual/package-manager-1:0 >virtual/pager-0-r1:0 >virtual/perl-Carp-1.520.0-r2:0 >virtual/perl-Compress-Raw-Bzip2-2.103.0-r3:0 >virtual/perl-Compress-Raw-Zlib-2.202.0:0 >virtual/perl-CPAN-2.330.0:0 >virtual/perl-CPAN-Meta-2.150.10-r6:0 >virtual/perl-CPAN-Meta-Requirements-2.140.0-r8:0 >virtual/perl-CPAN-Meta-YAML-0.18.0-r8:0 >virtual/perl-Data-Dumper-2.184.0:0 >virtual/perl-Digest-MD5-2.580.0-r1:0 >virtual/perl-Encode-3.170.0:0 >virtual/perl-Exporter-5.770.0:0 >virtual/perl-ExtUtils-CBuilder-0.280.236-r1:0 >virtual/perl-ExtUtils-Install-2.200.0-r1:0 >virtual/perl-ExtUtils-MakeMaker-7.640.0:0 >virtual/perl-ExtUtils-Manifest-1.730.0-r1:0 >virtual/perl-ExtUtils-ParseXS-3.450.0:0 >virtual/perl-File-Path-2.180.0-r1:0 >virtual/perl-File-Spec-3.840.0:0 >virtual/perl-File-Temp-0.231.100:0 >virtual/perl-Getopt-Long-2.520.0-r1:0 >virtual/perl-IO-1.500.0:0 >virtual/perl-IO-Compress-2.106.0:0 >virtual/perl-IO-Socket-IP-0.410.0-r1:0 >virtual/perl-JSON-PP-4.70.0:0 >virtual/perl-libnet-3.140.0:0 ssl >virtual/perl-MIME-Base64-3.160.0-r1:0 >virtual/perl-Module-Metadata-1.0.37-r2:0 >virtual/perl-parent-0.238.0-r2:0 >virtual/perl-Parse-CPAN-Meta-2.150.10-r6:0 >virtual/perl-Perl-OSType-1.10.0-r6:0 >virtual/perl-podlators-4.140.0-r3:0 >virtual/perl-Scalar-List-Utils-1.620.0:0 >virtual/perl-Test-Harness-3.440.0:0 >virtual/perl-Text-ParseWords-3.310.0:0 >virtual/perl-Time-Local-1.300.0-r1:0 >virtual/perl-version-0.992.900:0 >virtual/perl-XSLoader-0.310.0:0 >virtual/pkgconfig-2-r1:0 >virtual/service-manager-1-r1:0 >virtual/ssh-0-r1:0 -minimal >virtual/tmpfiles-0-r3:0 >virtual/ttf-fonts-1-r2:0 >virtual/udev-217-r5:0 >virtual/w3m-1:0 >www-client/pybugz-0.13-r2:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >www-client/w3m-0.5.3_p20220429-r1:0 -X -fbcon -gdk-pixbuf -gpm -imlib l10n_ja -lynxkeymap nls -nntp ssl unicode -xface >x11-apps/xprop-1.2.6:0 >x11-apps/xset-1.2.5:0 >x11-base/xcb-proto-1.15.2:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >x11-base/xorg-proto-2022.2:0 -test >x11-libs/cairo-1.17.6:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug -gles2-only -gles3 glib -gtk-doc -opengl -test >x11-libs/libICE-1.1.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/libSM-1.2.3-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc ipv6 uuid >x11-libs/libX11-1.8.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/libXau-1.0.11:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libxcb-1.15-r1:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb >x11-libs/libXdmcp-1.1.4-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXext-1.3.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXmu-1.1.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXt-1.2.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/pixman-0.42.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test >x11-libs/xtrans-1.4.0:0 -doc >x11-misc/compose-tables-1.8.2:0 >x11-misc/shared-mime-info-2.2:0 -test >x11-misc/xdg-utils-1.1.3_p20210805-r1:0 -dbus -doc -gnome > > >####################### ># build.log # >####################### >>>> Unpacking source... >>>> Unpacking mdtraj-1.9.7.tar.gz to /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work >>>> Source unpacked in /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work >>>> Preparing source in /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7 ... > * Build system packages: > * dev-python/setuptools : 65.6.3 >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7 ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7 ... > * python3_8: running distutils-r1_run_phase distutils-r1_python_compile >python3.8 setup.py build -j 16 >clang version 15.0.6 >Target: x86_64-pc-linux-gnu >Thread model: posix >InstalledDir: /usr/lib/llvm/15/bin >Configuration file: /etc/clang/clang.cfg >System configuration file directory: /etc/clang >Selected GCC installation: /usr/lib/gcc/x86_64-pc-linux-gnu/12 >Candidate multilib: .;@m64 >Candidate multilib: 32;@m32 >Selected multilib: .;@m64 >C compiler: >Attempting to autodetect OpenMP support... Compiler supports OpenMP >Attempting to autodetect SSE3 support... Compiler supports SSE3 >Attempting to autodetect SSE4.1 support... Compiler supports SSE4.1 >Attempting to autodetect NEON support... Did not detect NEON support > >Compiling mdtraj/formats/xtc/xtc.pyx because it depends on /usr/lib/python3.8/site-packages/Cython/Includes/libc/string.pxd. >Compiling mdtraj/formats/xtc/trr.pyx because it depends on /usr/lib/python3.8/site-packages/Cython/Includes/libc/string.pxd. >Compiling mdtraj/formats/tng/tng.pyx because it depends on /usr/lib/python3.8/site-packages/Cython/Includes/libc/string.pxd. >Compiling mdtraj/formats/dcd/dcd.pyx because it depends on /usr/lib/python3.8/site-packages/Cython/Includes/libc/string.pxd. >Compiling mdtraj/formats/binpos/binpos.pyx because it depends on /usr/lib/python3.8/site-packages/Cython/Includes/libc/string.pxd. >Compiling mdtraj/formats/dtr/dtr.pyx because it depends on /usr/lib/python3.8/site-packages/Cython/Includes/libc/string.pxd. >Compiling mdtraj/rmsd/_rmsd.pyx because it depends on /usr/lib/python3.8/site-packages/Cython/Includes/libc/string.pxd. >Compiling mdtraj/rmsd/_lprmsd.pyx because it depends on /usr/lib/python3.8/site-packages/Cython/Includes/libcpp/vector.pxd. >Compiling mdtraj/geometry/src/_geometry.pyx because it depends on /usr/lib/python3.8/site-packages/Cython/Includes/libcpp/vector.pxd. >Compiling mdtraj/geometry/neighbors.pyx because it depends on /usr/lib/python3.8/site-packages/Cython/Includes/libcpp/vector.pxd. >Compiling mdtraj/geometry/neighborlist.pyx because it depends on /usr/lib/python3.8/site-packages/Cython/Includes/libcpp/vector.pxd. >[ 1/11] Cythonizing mdtraj/formats/dcd/dcd.pyx >[ 2/11] Cythonizing mdtraj/geometry/neighborlist.pyx >[ 3/11] Cythonizing mdtraj/geometry/neighbors.pyx >[ 4/11] Cythonizing mdtraj/geometry/src/_geometry.pyx >[ 5/11] Cythonizing mdtraj/rmsd/_lprmsd.pyx >[ 6/11] Cythonizing mdtraj/formats/binpos/binpos.pyx >[ 7/11] Cythonizing mdtraj/formats/dtr/dtr.pyx >[ 8/11] Cythonizing mdtraj/formats/tng/tng.pyx >[ 9/11] Cythonizing mdtraj/formats/xtc/trr.pyx >[10/11] Cythonizing mdtraj/formats/xtc/xtc.pyx >[11/11] Cythonizing mdtraj/rmsd/_rmsd.pyx >running build >running build_py >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj >copying mdtraj/version.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj >copying mdtraj/io.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj >copying mdtraj/__init__.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils >copying mdtraj/utils/zipped.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils >copying mdtraj/utils/validation.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils >copying mdtraj/utils/unitcell.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils >copying mdtraj/utils/six.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils >copying mdtraj/utils/singleton.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils >copying mdtraj/utils/rotation.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils >copying mdtraj/utils/delay_import.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils >copying mdtraj/utils/contextmanagers.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils >copying mdtraj/utils/__init__.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/testing >copying mdtraj/testing/testing.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/testing >copying mdtraj/testing/docstrings.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/testing >copying mdtraj/testing/docscrape.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/testing >copying mdtraj/testing/__init__.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/testing >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/scripts >copying mdtraj/scripts/mdinspect.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/scripts >copying mdtraj/scripts/mdconvert.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/scripts >copying mdtraj/scripts/__init__.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/scripts >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/reporters >copying mdtraj/reporters/xtcreporter.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/reporters >copying mdtraj/reporters/netcdfreporter.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/reporters >copying mdtraj/reporters/hdf5reporter.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/reporters >copying mdtraj/reporters/dcdreporter.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/reporters >copying mdtraj/reporters/basereporter.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/reporters >copying mdtraj/reporters/__init__.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/reporters >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/nmr >copying mdtraj/nmr/shift_wrappers.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/nmr >copying mdtraj/nmr/scalar_couplings.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/nmr >copying mdtraj/nmr/__init__.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/nmr >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/thermodynamic_properties.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/shape.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/sasa.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/rg.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/rdf.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/order.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/internal.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/hbond.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/dssp.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/distance.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/dihedral.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/contact.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/angle.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/alignment.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >copying mdtraj/geometry/__init__.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/xyzfile.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/registry.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/psf.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/prmtop.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/openmmxml.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/netcdf.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/mol2.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/mdcrd.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/lh5.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/lammpstrj.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/hoomdxml.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/hdf5.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/gsd.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/gro.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/arc.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/amberrst.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >copying mdtraj/formats/__init__.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/core >copying mdtraj/core/trajectory.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/core >copying mdtraj/core/topology.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/core >copying mdtraj/core/selection.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/core >copying mdtraj/core/residue_names.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/core >copying mdtraj/core/element.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/core >copying mdtraj/core/__init__.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/core >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/unit_operators.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/unit_math.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/unit_definitions.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/unit.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/standard_dimensions.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/quantity.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/prefix.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/mymatrix.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/doctests.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/constants.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/baseunit.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/basedimension.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >copying mdtraj/utils/unit/__init__.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/utils/unit >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats/pdb >copying mdtraj/formats/pdb/pdbstructure.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats/pdb >copying mdtraj/formats/pdb/pdbfile.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats/pdb >copying mdtraj/formats/pdb/__init__.py -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats/pdb >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats/pdb/data >copying mdtraj/formats/pdb/data/residues.xml -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats/pdb/data >copying mdtraj/formats/pdb/data/pdbNames.xml -> /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats/pdb/data >warning: build_py: byte-compiling is disabled, skipping. > >running build_ext >building 'mdtraj.formats.xtc' extension >building 'mdtraj.formats.trr' extension >building 'mdtraj.formats.tng' extension >building 'mdtraj.formats.dcd' extension >building 'mdtraj.formats.binpos' extension >building 'mdtraj.formats.dtr' extension >building 'mdtraj._rmsd' extension >building 'mdtraj._lprmsd' extension >building 'mdtraj.core.lib.libtheobald' extension >building 'mdtraj.geometry._geometry' extension >building 'mdtraj.geometry.drid' extension >building 'mdtraj.geometry.neighbors' extension >building 'mdtraj.geometry.neighborlist' extension >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8 >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8 >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/binpos >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/src >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/tng >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/src >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/dcd >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/xtc >INFO: compile options: '-Imdtraj/geometry/include -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >extra options: '-fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare' >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/src >INFO: C compiler: clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC > >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/dtr >INFO: compile options: '-Imdtraj/geometry/include -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >extra options: '-fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare' >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/dcd/src >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/xtc/src >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/src >INFO: compile options: '-Imdtraj/rmsd/include -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >extra options: '-fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare' >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/tng/src >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/dtr/src >INFO: compile options: '-Imdtraj/geometry/include -Imdtraj/geometry/src/kernels -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >extra options: '-fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare' >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/src >INFO: compile options: '-Imdtraj/geometry/include -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >extra options: '-fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare' >INFO: clang: mdtraj/geometry/neighborlist.cpp >INFO: compile options: '-Imdtraj/formats/dcd/include/ -Imdtraj/formats/dcd/ -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >extra options: '-Wno-unused-function -Wno-unreachable-code -Wno-sign-compare' >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/binpos/src >INFO: clang: mdtraj/geometry/neighbors.cpp >INFO: compile options: '-DDESRES_READ_TIMESTEP2=1 -Imdtraj/formats/dtr/include/ -Imdtraj/formats/dtr/ -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >extra options: '-Wno-unused-function -Wno-unreachable-code -Wno-sign-compare' >INFO: clang: mdtraj/geometry/src/neighborlist.cpp >INFO: clang: mdtraj/geometry/drid.cpp >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/xtc/src >INFO: clang: mdtraj/geometry/src/neighbors.cpp >INFO: clang: mdtraj/geometry/src/sasa.cpp >INFO: clang: mdtraj/geometry/src/dssp.cpp >INFO: clang: mdtraj/rmsd/src/theobald_rmsd.cpp >INFO: clang: mdtraj/geometry/src/dridkernels.cpp >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/tng/src/compression >INFO: clang: mdtraj/geometry/src/geometry.cpp >INFO: compile options: '-Imdtraj/rmsd -Imdtraj/rmsd/include -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >extra options: '-fopenmp -msse2 -mssse3 -O3 -funroll-loops --std=c++11 -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare' >INFO: clang: mdtraj/formats/dcd/dcd.c >INFO: clang: mdtraj/rmsd/src/center.cpp >INFO: clang: mdtraj/formats/dtr/dtr.cpp >INFO: clang: mdtraj/rmsd/_rmsd.cpp >INFO: compile options: '-Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >extra options: '-Wno-unused-function -Wno-unreachable-code -Wno-sign-compare' >INFO: compile options: '-Imdtraj/rmsd/include -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >extra options: '-msse2 -mssse3 -O3 -funroll-loops --std=c++11' >INFO: compile options: '-Imdtraj/formats/binpos/include/ -Imdtraj/formats/binpos/ -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >extra options: '-Wno-unused-function -Wno-unreachable-code -Wno-sign-compare' >INFO: clang: mdtraj/rmsd/src/rotation.cpp >INFO: compile options: '-Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >extra options: '-Wno-unused-function -Wno-unreachable-code -Wno-sign-compare' >creating /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/tng/src/lib >INFO: clang: mdtraj/geometry/src/_geometry.cpp >INFO: compile options: '-DUSE_ZLIB=1 -Imdtraj/formats/tng/include -I/usr/include -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c' >In file included from mdtraj/formats/dcd/dcd.c:776: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:5: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948: >/usr/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] >#warning "Using deprecated NumPy API, disable it with " \ > ^ >In file included from mdtraj/formats/dtr/dtr.cpp:797: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:5: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948: >/usr/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] >#warning "Using deprecated NumPy API, disable it with " \ > ^ >INFO: clang: mdtraj/geometry/src/moments.cpp >INFO: clang: mdtraj/formats/dcd/src/dcdplugin.c >INFO: clang: mdtraj/formats/dtr/src/dtrplugin.cxx >In file included from mdtraj/geometry/src/_geometry.cpp:810: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:5: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948: >/usr/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] >#warning "Using deprecated NumPy API, disable it with " \ > ^ >mdtraj/formats/dcd/dcd.c:9371:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >INFO: clang: mdtraj/rmsd/_lprmsd.cpp >INFO: clang: mdtraj/formats/xtc/trr.c >INFO: clang: mdtraj/rmsd/src/fancy_index.cpp >In file included from mdtraj/formats/xtc/trr.c:778: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:5: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948: >/usr/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] >#warning "Using deprecated NumPy API, disable it with " \ > ^ >INFO: clang: mdtraj/formats/xtc/src/xdrfile.c >mdtraj/geometry/drid.cpp:17146:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/drid.cpp:17260:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/drid.cpp:17449:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/drid.cpp:17568:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/drid.cpp:17829:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/drid.cpp:17975:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >In file included from mdtraj/rmsd/_lprmsd.cpp:808: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:5: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948: >/usr/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] >#warning "Using deprecated NumPy API, disable it with " \ > ^ >mdtraj/formats/xtc/src/xdrfile.c:1124:49: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] > (float)maxint[2] - (float)minint[2] >= INT_MAX-2) { > ~~ ~~~~~~~^~ >mdtraj/formats/xtc/src/xdrfile.c:1123:49: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] > (float)maxint[1] - (float)minint[1] >= INT_MAX-2 || > ~~ ~~~~~~~^~ >mdtraj/formats/xtc/src/xdrfile.c:1122:52: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] > if ((float)maxint[0] - (float)minint[0] >= INT_MAX-2 || > ~~ ~~~~~~~^~ >mdtraj/formats/xtc/src/xdrfile.c:1611:49: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] > (float)maxint[2] - (float)minint[2] >= INT_MAX-2) { > ~~ ~~~~~~~^~ >mdtraj/formats/xtc/src/xdrfile.c:1610:49: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] > (float)maxint[1] - (float)minint[1] >= INT_MAX-2 || > ~~ ~~~~~~~^~ >mdtraj/formats/xtc/src/xdrfile.c:1609:52: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] > if ((float)maxint[0] - (float)minint[0] >= INT_MAX-2 || > ~~ ~~~~~~~^~ >INFO: clang: mdtraj/rmsd/src/Munkres.cpp >mdtraj/geometry/drid.cpp:24322:5: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/neighborlist.cpp:16447:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/neighborlist.cpp:16569:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/neighborlist.cpp:16833:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/neighborlist.cpp:16982:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >INFO: clang: mdtraj/rmsd/src/euclidean_permutation.cpp >mdtraj/geometry/neighbors.cpp:17009:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/neighbors.cpp:17131:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/neighbors.cpp:17395:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/neighbors.cpp:17544:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/rmsd/_rmsd.cpp:23569:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/rmsd/_rmsd.cpp:23691:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/rmsd/_rmsd.cpp:23955:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/rmsd/_rmsd.cpp:24104:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/xtc/trr.c:14947:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/xtc/trr.c:15043:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/xtc/trr.c:15152:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/xtc/trr.c:15248:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/xtc/trr.c:15357:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/xtc/trr.c:15466:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/dtr/dtr.cpp:9687:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/xtc/trr.c:22454:5: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >INFO: clang: mdtraj/formats/xtc/src/xdr_seek.c >mdtraj/formats/dtr/src/dtrplugin.cxx:488:21: warning: format specifies type 'int' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] > keys[i].size(), m_framesize); > ^~~~~~~~~~~~~~ >mdtraj/formats/dtr/src/dtrplugin.cxx:488:37: warning: format specifies type 'int' but the argument has type 'uint64_t' (aka 'unsigned long') [-Wformat] > keys[i].size(), m_framesize); > ^~~~~~~~~~~ >mdtraj/formats/dtr/src/dtrplugin.cxx:680:44: warning: field 'eno' is uninitialized when used here [-Wuninitialized] > : std::runtime_error(text + strerror(eno)), eno(_eno){} > ^ >mdtraj/geometry/src/_geometry.cpp:22461:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/src/_geometry.cpp:22583:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/src/_geometry.cpp:22847:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/geometry/src/_geometry.cpp:22996:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >INFO: clang: mdtraj/formats/xtc/src/xdrfile_trr.c >INFO: clang: mdtraj/formats/xtc/xtc.c >INFO: clang: mdtraj/formats/binpos/binpos.c >In file included from mdtraj/formats/xtc/xtc.c:778: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:5: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948: >/usr/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] >#warning "Using deprecated NumPy API, disable it with " \ > ^ >INFO: clang: mdtraj/formats/binpos/src/binposplugin.c >In file included from mdtraj/formats/binpos/binpos.c:776: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:5: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948: >/usr/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] >#warning "Using deprecated NumPy API, disable it with " \ > ^ >INFO: clang: mdtraj/formats/tng/tng.c >mdtraj/formats/binpos/binpos.c:8333:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/xtc/xtc.c:13536:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/xtc/xtc.c:13632:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/xtc/xtc.c:13749:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >INFO: clang: mdtraj/formats/xtc/src/xdrfile_xtc.c >In file included from mdtraj/formats/tng/tng.c:804: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:5: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948: >/usr/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] >#warning "Using deprecated NumPy API, disable it with " \ > ^ >6 warnings generated. >mdtraj/formats/xtc/xtc.c:20952:5: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >INFO: clang: mdtraj/formats/tng/src/compression/xtc3.c >INFO: clang: mdtraj/formats/tng/src/compression/widemuldiv.c >INFO: clang: mdtraj/formats/tng/src/compression/xtc2.c >mdtraj/formats/tng/tng.c:11589:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/tng/tng.c:11707:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/tng/tng.c:11820:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/tng/tng.c:11933:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/tng/tng.c:12051:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/tng/tng.c:12164:3: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, /*tp_print*/ > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >mdtraj/formats/tng/tng.c:18585:5: warning: 'tp_print' is deprecated [-Wdeprecated-declarations] > 0, > ^ >/usr/include/python3.8/cpython/object.h:260:5: note: 'tp_print' has been explicitly marked deprecated here > Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); > ^ >/usr/include/python3.8/pyport.h:515:54: note: expanded from macro 'Py_DEPRECATED' >#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__)) > ^ >INFO: clang: mdtraj/formats/tng/src/compression/warnmalloc.c >INFO: clang: mdtraj/formats/tng/src/compression/vals16.c >INFO: clang: mdtraj/formats/tng/src/compression/tng_compress.c >INFO: clang: mdtraj/formats/tng/src/compression/rle.c >INFO: clang: mdtraj/formats/tng/src/compression/mtf.c >INFO: clang: mdtraj/formats/tng/src/compression/merge_sort.c >INFO: clang: mdtraj/formats/tng/src/compression/lz77.c >2 warnings generated. >INFO: clang: mdtraj/formats/tng/src/compression/huffmem.c >INFO: clang -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/dcd/dcd.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/dcd/src/dcdplugin.o -L/usr/lib64 -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats/dcd.cpython-38-x86_64-linux-gnu.so >INFO: clang: mdtraj/formats/tng/src/compression/huffman.c >INFO: clang: mdtraj/formats/tng/src/compression/fixpoint.c >INFO: clang: mdtraj/formats/tng/src/compression/dict.c >INFO: clang: mdtraj/formats/tng/src/compression/coder.c >INFO: clang: mdtraj/rmsd/src/rotation.cpp >INFO: clang: mdtraj/rmsd/src/center.cpp >INFO: clang: mdtraj/rmsd/src/theobald_rmsd.cpp >INFO: clang: mdtraj/formats/xtc/src/xdr_seek.c >INFO: clang: mdtraj/formats/xtc/src/xdrfile.c >INFO: clang: mdtraj/formats/tng/src/compression/bwt.c >INFO: clang: mdtraj/formats/tng/src/compression/bwlzh.c >mdtraj/formats/xtc/src/xdrfile.c:1124:49: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] > (float)maxint[2] - (float)minint[2] >= INT_MAX-2) { > ~~ ~~~~~~~^~ >mdtraj/formats/xtc/src/xdrfile.c:1123:49: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] > (float)maxint[1] - (float)minint[1] >= INT_MAX-2 || > ~~ ~~~~~~~^~ >mdtraj/formats/xtc/src/xdrfile.c:1122:52: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] > if ((float)maxint[0] - (float)minint[0] >= INT_MAX-2 || > ~~ ~~~~~~~^~ >mdtraj/formats/xtc/src/xdrfile.c:1611:49: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] > (float)maxint[2] - (float)minint[2] >= INT_MAX-2) { > ~~ ~~~~~~~^~ >mdtraj/formats/xtc/src/xdrfile.c:1610:49: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] > (float)maxint[1] - (float)minint[1] >= INT_MAX-2 || > ~~ ~~~~~~~^~ >mdtraj/formats/xtc/src/xdrfile.c:1609:52: warning: implicit conversion from 'int' to 'float' changes value from 2147483645 to 2147483648 [-Wimplicit-const-int-float-conversion] > if ((float)maxint[0] - (float)minint[0] >= INT_MAX-2 || > ~~ ~~~~~~~^~ >INFO: clang: mdtraj/formats/tng/src/lib/tng_io.c >2 warnings generated. >INFO: clang: mdtraj/formats/tng/src/lib/md5.c >mdtraj/formats/tng/src/lib/tng_io.c:1064:57: error: incompatible function pointer types assigning to 'tng_function_status (*)(const tng_trajectory_t, int32_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, int *)') from 'tng_function_status (*)(const tng_trajectory_t, uint32_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, unsigned int *)') [-Werror,-Wincompatible-function-pointer-types] > tng_data->input_endianness_swap_func_32 = > ^ >mdtraj/formats/tng/src/lib/tng_io.c:1073:57: error: incompatible function pointer types assigning to 'tng_function_status (*)(const tng_trajectory_t, int64_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, long *)') from 'tng_function_status (*)(const tng_trajectory_t, uint64_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, unsigned long *)') [-Werror,-Wincompatible-function-pointer-types] > tng_data->input_endianness_swap_func_64 = > ^ >mdtraj/formats/tng/src/lib/tng_io.c:1089:57: error: incompatible function pointer types assigning to 'tng_function_status (*)(const tng_trajectory_t, int32_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, int *)') from 'tng_function_status (*)(const tng_trajectory_t, uint32_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, unsigned int *)') [-Werror,-Wincompatible-function-pointer-types] > tng_data->input_endianness_swap_func_32 = > ^ >mdtraj/formats/tng/src/lib/tng_io.c:1098:57: error: incompatible function pointer types assigning to 'tng_function_status (*)(const tng_trajectory_t, int64_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, long *)') from 'tng_function_status (*)(const tng_trajectory_t, uint64_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, unsigned long *)') [-Werror,-Wincompatible-function-pointer-types] > tng_data->input_endianness_swap_func_64 = > ^ >INFO: clang: mdtraj/rmsd/src/center.cpp >mdtraj/formats/tng/src/lib/tng_io.c:9565:53: warning: comparison of distinct pointer types ('tng_function_status (*)(const tng_trajectory_t, int32_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, int *)') and 'tng_function_status (*)(const tng_trajectory_t, uint32_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, unsigned int *)')) [-Wcompare-distinct-pointer-types] > if(tng_data->output_endianness_swap_func_32 == > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ >mdtraj/formats/tng/src/lib/tng_io.c:9570:58: warning: comparison of distinct pointer types ('tng_function_status (*)(const tng_trajectory_t, int32_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, int *)') and 'tng_function_status (*)(const tng_trajectory_t, uint32_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, unsigned int *)')) [-Wcompare-distinct-pointer-types] > else if(tng_data->output_endianness_swap_func_32 == > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ >mdtraj/formats/tng/src/lib/tng_io.c:9588:53: warning: comparison of distinct pointer types ('tng_function_status (*)(const tng_trajectory_t, int64_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, long *)') and 'tng_function_status (*)(const tng_trajectory_t, uint64_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, unsigned long *)')) [-Wcompare-distinct-pointer-types] > if(tng_data->output_endianness_swap_func_64 == > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ >mdtraj/formats/tng/src/lib/tng_io.c:9593:58: warning: comparison of distinct pointer types ('tng_function_status (*)(const tng_trajectory_t, int64_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, long *)') and 'tng_function_status (*)(const tng_trajectory_t, uint64_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, unsigned long *)')) [-Wcompare-distinct-pointer-types] > else if(tng_data->output_endianness_swap_func_64 == > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ >mdtraj/formats/tng/src/lib/tng_io.c:9651:54: error: incompatible function pointer types assigning to 'tng_function_status (*)(const tng_trajectory_t, int32_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, int *)') from 'tng_function_status (*)(const tng_trajectory_t, uint32_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, unsigned int *)') [-Werror,-Wincompatible-function-pointer-types] > tng_data->output_endianness_swap_func_32 = > ^ >mdtraj/formats/tng/src/lib/tng_io.c:9660:54: error: incompatible function pointer types assigning to 'tng_function_status (*)(const tng_trajectory_t, int64_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, long *)') from 'tng_function_status (*)(const tng_trajectory_t, uint64_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, unsigned long *)') [-Werror,-Wincompatible-function-pointer-types] > tng_data->output_endianness_swap_func_64 = > ^ >mdtraj/formats/tng/src/lib/tng_io.c:9673:54: error: incompatible function pointer types assigning to 'tng_function_status (*)(const tng_trajectory_t, int32_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, int *)') from 'tng_function_status (*)(const tng_trajectory_t, uint32_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, unsigned int *)') [-Werror,-Wincompatible-function-pointer-types] > tng_data->output_endianness_swap_func_32 = > ^ >mdtraj/formats/tng/src/lib/tng_io.c:9682:54: error: incompatible function pointer types assigning to 'tng_function_status (*)(const tng_trajectory_t, int64_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, long *)') from 'tng_function_status (*)(const tng_trajectory_t, uint64_t *)' (aka 'tng_function_status (*)(struct tng_trajectory *const, unsigned long *)') [-Werror,-Wincompatible-function-pointer-types] > tng_data->output_endianness_swap_func_64 = > ^ >4 warnings and 8 errors generated. >INFO: clang: mdtraj/rmsd/src/theobald_rmsd.cpp >3 warnings generated. >INFO: clang++ -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/dtr/dtr.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/dtr/src/dtrplugin.o -L/usr/lib64 -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats/dtr.cpython-38-x86_64-linux-gnu.so >2 warnings generated. >INFO: clang -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/binpos/binpos.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/binpos/src/binposplugin.o -L/usr/lib64 -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats/binpos.cpython-38-x86_64-linux-gnu.so >4 warnings generated. >INFO: clang++ -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/neighborlist.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/src/neighborlist.o -L/usr/lib64 -lgomp -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry/neighborlist.cpython-38-x86_64-linux-gnu.so >1 warning generated. >INFO: clang++ -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/_lprmsd.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/src/theobald_rmsd.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/src/rotation.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/src/center.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/src/fancy_index.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/src/Munkres.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/src/euclidean_permutation.o -L/usr/lib64 -lgomp -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/_lprmsd.cpython-38-x86_64-linux-gnu.so >INFO: x86_64-pc-linux-gnu-ar: adding 2 object files to /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/core/lib/libtheobald.a >4 warnings generated. >INFO: clang++ -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/neighbors.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/src/neighbors.o -L/usr/lib64 -lgomp -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry/neighbors.cpython-38-x86_64-linux-gnu.so >6 warnings generated. >7 warnings generated. >INFO: clang++ -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/drid.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/src/dridkernels.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/src/moments.o -L/usr/lib64 -lgomp -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry/drid.cpython-38-x86_64-linux-gnu.so >8 warnings generated. >5 warnings generated. >INFO: clang++ -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/src/_geometry.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/src/sasa.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/src/dssp.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/geometry/src/geometry.o -L/usr/lib64 -lgomp -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/geometry/_geometry.cpython-38-x86_64-linux-gnu.so >4 warnings generated. >INFO: clang++ -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/_rmsd.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/src/theobald_rmsd.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/src/rotation.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/rmsd/src/center.o -L/usr/lib64 -lgomp -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/_rmsd.cpython-38-x86_64-linux-gnu.so >5 warnings generated. >INFO: clang -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/xtc/xtc.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/xtc/src/xdrfile.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/xtc/src/xdr_seek.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/xtc/src/xdrfile_xtc.o -L/usr/lib64 -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats/xtc.cpython-38-x86_64-linux-gnu.so >8 warnings generated. >INFO: clang -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/xtc/trr.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/xtc/src/xdrfile.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/xtc/src/xdr_seek.o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/xtc/src/xdrfile_trr.o -L/usr/lib64 -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/lib/mdtraj/formats/trr.cpython-38-x86_64-linux-gnu.so >warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. >warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. >warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. >error: Command "clang -O2 -g0 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Werror=implicit-function-declaration -Werror=implicit-int -Werror=incompatible-function-pointer-types -fPIC -DUSE_ZLIB=1 -Imdtraj/formats/tng/include -I/usr/include -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c mdtraj/formats/tng/src/lib/tng_io.c -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7-python3_8/temp.linux-x86_64-3.8/mdtraj/formats/tng/src/lib/tng_io.o" failed with exit status 1 > * ERROR: sci-chemistry/mdtraj-1.9.7::gentoo failed (compile phase): > * (no error message) > * > * Call stack: > * ebuild.sh, line 136: Called src_compile > * environment, line 3367: Called distutils-r1_src_compile > * environment, line 1527: Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile' > * environment, line 703: Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile' > * environment, line 3056: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' > * environment, line 2586: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' > * environment, line 2584: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile' > * environment, line 1014: Called distutils-r1_run_phase 'distutils-r1_python_compile' > * environment, line 1509: Called distutils-r1_python_compile > * environment, line 1315: Called esetup.py 'build' '-j' '16' > * environment, line 2118: Called die > * The specific snippet of code: > * "${@}" || die -n; > * > * If you need support, post the output of `emerge --info '=sci-chemistry/mdtraj-1.9.7::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-chemistry/mdtraj-1.9.7::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-chemistry/mdtraj-1.9.7:20221215-090347.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/mdtraj-1.9.7/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/mdtraj-1.9.7/temp/environment'. > * Working directory: '/var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7' > * S: '/var/tmp/portage/sci-chemistry/mdtraj-1.9.7/work/mdtraj-1.9.7' >
You cannot view the attachment while viewing its details because your browser does not support IFRAMEs.
View the attachment on a separate page
.
View Attachment As Raw
Actions:
View
Attachments on
bug 886105
: 842785