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Gentoo's Bugzilla – Attachment 840843 Details for
Bug 884769
sys-cluster/pmix-4.2.2 - configure: error: Cannot continue.
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sys-cluster:pmix-4.2.2:20221207-194012.log
sys-cluster:pmix-4.2.2:20221207-194012.log (text/plain), 21.63 KB, created by
Toralf Förster
on 2022-12-07 19:41:55 UTC
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hide
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Description:
sys-cluster:pmix-4.2.2:20221207-194012.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2022-12-07 19:41:55 UTC
Size:
21.63 KB
patch
obsolete
> * Package: sys-cluster/pmix-4.2.2:0 > * Repository: gentoo > * Maintainer: cluster@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux pmi userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > >>>> Unpacking source... >>>> Unpacking pmix-4.2.2.tar.bz2 to /var/tmp/portage/sys-cluster/pmix-4.2.2/work >>>> Source unpacked in /var/tmp/portage/sys-cluster/pmix-4.2.2/work >>>> Preparing source in /var/tmp/portage/sys-cluster/pmix-4.2.2/work/pmix-4.2.2 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sys-cluster/pmix-4.2.2/work/pmix-4.2.2 ... > * econf: updating pmix-4.2.2/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating pmix-4.2.2/config/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-dependency-tracking --disable-silent-rules --disable-static --docdir=/usr/share/doc/pmix-4.2.2 --htmldir=/usr/share/doc/pmix-4.2.2/html --with-sysroot=/ --libdir=/usr/lib64 --disable-werror --disable-debug --without-munge >checking for a sed that does not truncate output... /bin/sed >configure: builddir: /var/tmp/portage/sys-cluster/pmix-4.2.2/work/pmix-4.2.2 >configure: srcdir: /var/tmp/portage/sys-cluster/pmix-4.2.2/work/pmix-4.2.2 > >============================================================================ >== Configuring PMIx >============================================================================ >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking target system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a race-free mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether make supports nested variables... (cached) yes >checking for grep that handles long lines and -e... /bin/grep >checking whether make supports the include directive... yes (GNU style) >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether the compiler supports GNU C... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to enable C11 features... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking for stdio.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for strings.h... yes >checking for sys/stat.h... yes >checking for sys/types.h... yes >checking for unistd.h... yes >checking for wchar.h... yes >checking for minix/config.h... no >checking whether it is safe to define __EXTENSIONS__... yes >checking whether _XOPEN_SOURCE should be defined... no >checking directory of build tree... /var/tmp/portage/sys-cluster/pmix-4.2.2/work/pmix-4.2.2 >checking directory of prefix... /usr >checking directory of source tree... . >checking if want wrapper compiler rpath support... yes >checking if want wrapper compiler runpath support... yes >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking the archiver (x86_64-pc-linux-gnu-ar) interface... ar >checking for flex... flex >checking for lex output file root... lex.yy >checking for lex library... none needed >checking whether yytext is a pointer... yes >checking if want dlopen support... yes >checking if want developer-level compiler pickyness... no >checking if want memory sanitizers... no >checking if want developer-level debugging code... no >checking if want to install PMIx header files... yes >checking if tests and examples are to be installed... yes >checking if want pretty-print stacktrace... yes >checking if want dstore pthread-based locking... yes >checking if want ident string... >checking if want developer-level timing support... no >checking if want to disable binaries... yes >checking if want install Python bindings... no >checking python... checking for python... /usr/bin/python >checking for python version... 3.10 >checking for python platform... linux >checking for GNU default python prefix... ${prefix} >checking for GNU default python exec_prefix... ${exec_prefix} >checking for python script directory (pythondir)... ${PYTHON_PREFIX}/lib/python3.10/site-packages >checking for python extension module directory (pyexecdir)... ${PYTHON_EXEC_PREFIX}/lib/python3.10/site-packages >/usr/bin/python >checking if want to support dlopen of non-global namespaces... yes >checking if want pty support... yes >checking if want build psec/dummy_handshake... no >checking if want IPv6 support... no >installing to directory "/usr" >checking how to print strings... printf >checking for a sed that does not truncate output... (cached) /bin/sed >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-file... no >checking for file... file >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... x86_64-pc-linux-gnu-dlltool >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... (cached) x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... / >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... mt >checking if mt is a manifest tool... no >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no > >*** C compiler and preprocessor >checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc >checking whether the compiler supports GNU C... (cached) yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes >checking for x86_64-pc-linux-gnu-gcc option to enable C11 features... (cached) none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... (cached) yes >checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none >checking for x86_64-pc-linux-gnu-gcc options needed to detect all undeclared functions... none needed >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for static linker flag... no >checking for pkg-config... pkg-config >checking __NetBSD__... no >checking __FreeBSD__... no >checking __OpenBSD__... no >checking __DragonFly__... no >checking __386BSD__... no >checking __bsdi__... no >checking __APPLE__... no >checking __linux__... yes >checking __sun__... no >checking __sun... no >checking for netdb.h... yes >checking for netinet/in.h... yes >checking for netinet/tcp.h... yes >checking for struct sockaddr_in... yes >checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >configure: pmix builddir: /var/tmp/portage/sys-cluster/pmix-4.2.2/work/pmix-4.2.2 >configure: pmix srcdir: /var/tmp/portage/sys-cluster/pmix-4.2.2/work/pmix-4.2.2 >checking for pmix version... 4.2.2 >checking for pmix standard version... 4.2 >checking for pmix standard stable ABI version(s)... 0.0 >checking for pmix standard provisional ABI version(s)... 0.0 >checking if want pmix maintainer support... disabled >checking for pmix directory prefix... (none) >checking if want package/brand string... PMIx portage@localhost Distribution > >============================================================================ >== Compiler and preprocessor tests >============================================================================ >checking if x86_64-pc-linux-gnu-gcc requires a flag for C11... no >configure: verifying x86_64-pc-linux-gnu-gcc supports C11 without a flag >checking if x86_64-pc-linux-gnu-gcc supports C11 _Thread_local... yes >checking if x86_64-pc-linux-gnu-gcc supports C11 atomic variables... yes >checking if x86_64-pc-linux-gnu-gcc supports C11 _Atomic keyword... yes >checking if x86_64-pc-linux-gnu-gcc supports C11 _c11_atomic functions... no >checking if x86_64-pc-linux-gnu-gcc supports C11 _Generic keyword... yes >checking if x86_64-pc-linux-gnu-gcc supports C11 _Static_assert... yes >checking if x86_64-pc-linux-gnu-gcc supports C11 atomic_fetch_xor_explicit... yes >configure: no flag required for C11 support >checking for x86_64-pc-linux-gnu-gcc option to add a directory only to the search path for the quote form of include... -iquote >checking if x86_64-pc-linux-gnu-gcc supports __thread... yes >checking if x86_64-pc-linux-gnu-gcc supports C11 _Thread_local... yes >checking for the C compiler vendor... gnu >checking if x86_64-pc-linux-gnu-gcc supports (-finline-functions)... yes >CFLAGS result: -DNDEBUG -pipe -march=native -fno-diagnostics-color -O2 -finline-functions >checking if x86_64-pc-linux-gnu-gcc supports __builtin_expect... >checking if x86_64-pc-linux-gnu-gcc supports __builtin_prefetch... >checking if x86_64-pc-linux-gnu-gcc supports __builtin_clz... >checking for C optimization flags... -DNDEBUG -pipe -march=native -fno-diagnostics-color -O2 -finline-functions >checking for int8_t... yes >checking for uint8_t... yes >checking for int16_t... yes >checking for uint16_t... yes >checking for int32_t... yes >checking for uint32_t... yes >checking for int64_t... yes >checking for uint64_t... yes >checking for __int128... yes >checking for uint128_t... no >checking for long long... yes >checking for intptr_t... yes >checking for uintptr_t... yes >checking for ptrdiff_t... yes >checking size of _Bool... 1 >checking size of short... 2 >checking size of int... 4 >checking size of long... 8 >checking size of void *... 8 >checking size of size_t... 8 >checking size of pid_t... 4 >checking alignment of bool... 1 >checking alignment of int... 4 >checking alignment of long... 8 >checking alignment of size_t... 8 >checking alignment of long long... 8 >checking alignment of double... 8 >checking for C bool type... no >checking size of _Bool... (cached) 1 >checking for inline... __inline__ > >*** Compiler characteristics >checking for __attribute__... yes >checking for __attribute__(aligned)... yes >checking for __attribute__(always_inline)... yes >checking for __attribute__(cold)... yes >checking for __attribute__(const)... yes >checking for __attribute__(deprecated)... yes >checking for __attribute__(deprecated_argument)... yes >checking for __attribute__(format)... yes >checking for __attribute__(format_funcptr)... yes >checking for __attribute__(hot)... yes >checking for __attribute__(malloc)... yes >checking for __attribute__(may_alias)... yes >checking for __attribute__(no_instrument_function)... yes >checking for __attribute__(nonnull)... yes >checking for __attribute__(noreturn)... yes >checking for __attribute__(noreturn_funcptr)... yes >checking for __attribute__(packed)... yes >checking for __attribute__(pure)... yes >checking for __attribute__(sentinel)... yes >checking for __attribute__(unused)... yes >checking for __attribute__(visibility)... yes >checking for __attribute__(warn_unused_result)... yes >checking for __attribute__(destructor)... yes >checking for __attribute__(optnone)... no >checking for __attribute__(extension)... yes >checking for compiler familyid... 0 >checking for compiler version... 0 > >*** Atomics >checking for 32-bit GCC built-in atomics... yes >checking for 64-bit GCC built-in atomics... yes >checking if 64-bit GCC built-in atomics are lock-free... yes >checking for x86_64 architecture... yes >checking for atomics style... c11 > >============================================================================ >== Header file tests >============================================================================ >checking for arpa/inet.h... yes >checking for fcntl.h... yes >checking for ifaddrs.h... yes >checking for inttypes.h... (cached) yes >checking for libgen.h... yes >checking for net/uio.h... no >checking for netinet/in.h... (cached) yes >checking for stdint.h... (cached) yes >checking for stddef.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for strings.h... (cached) yes >checking for sys/ioctl.h... yes >checking for sys/param.h... yes >checking for sys/select.h... yes >checking for sys/socket.h... yes >checking for sys/sockio.h... no >checking for stdarg.h... yes >checking for sys/stat.h... (cached) yes >checking for sys/time.h... yes >checking for sys/types.h... (cached) yes >checking for sys/un.h... yes >checking for sys/uio.h... yes >checking for sys/wait.h... yes >checking for syslog.h... yes >checking for time.h... yes >checking for unistd.h... (cached) yes >checking for dirent.h... yes >checking for crt_externs.h... no >checking for signal.h... yes >checking for ioLib.h... no >checking for sockLib.h... no >checking for hostLib.h... no >checking for limits.h... yes >checking for sys/fcntl.h... yes >checking for sys/statfs.h... yes >checking for sys/statvfs.h... yes >checking for netdb.h... (cached) yes >checking for ucred.h... no >checking for zlib.h... yes >checking for sys/auxv.h... yes >checking for sys/sysctl.h... no >checking for termio.h... yes >checking for termios.h... yes >checking for pty.h... yes >checking for libutil.h... no >checking for util.h... no >checking for grp.h... yes >checking for sys/cdefs.h... yes >checking for utmp.h... yes >checking for stropts.h... no >checking for sys/utsname.h... yes >checking for sys/mount.h... yes >checking for sys/sysctl.h... (cached) no >checking for net/if.h... yes >checking for stdbool.h... yes >checking if <stdbool.h> works... yes > >============================================================================ >== Type tests >============================================================================ >checking for socklen_t... yes >checking for struct sockaddr_in... (cached) yes >checking for struct sockaddr_un... yes >checking for struct sockaddr_in6... yes >checking for struct sockaddr_storage... yes >checking whether AF_UNSPEC is declared... yes >checking whether PF_UNSPEC is declared... yes >checking whether AF_INET6 is declared... yes >checking whether PF_INET6 is declared... yes >checking if SA_RESTART defined in signal.h... yes >checking for struct sockaddr.sa_len... no >checking for struct dirent.d_type... yes >checking for siginfo_t.si_fd... yes >checking for siginfo_t.si_band... yes >checking for struct statfs.f_type... yes >checking for struct statfs.f_fstypename... no >checking for struct statvfs.f_basetype... no >checking for struct statvfs.f_fstypename... no >checking for struct ucred.uid... yes >checking for struct ucred.cr_uid... no >checking for struct sockpeercred.uid... no >checking for pointer diff type... ptrdiff_t (size: ) >checking the linker for support for the -fini option... yes > >============================================================================ >== Library and Function tests >============================================================================ >checking for library containing openpty... none required >checking for library containing gethostbyname... none required >checking for library containing socket... none required >checking for library containing dirname... none required >checking for library containing ceil... -lm >checking for library containing clock_gettime... none required >checking for asprintf... yes >checking for snprintf... yes >checking for vasprintf... yes >checking for vsnprintf... yes >checking for strsignal... yes >checking for socketpair... yes >checking for strncpy_s... no >checking for usleep... yes >checking for statfs... yes >checking for statvfs... yes >checking for getpeereid... no >checking for getpeerucred... no >checking for strnlen... yes >checking for posix_fallocate... yes >checking for tcgetpgrp... yes >checking for setpgid... yes >checking for ptsname... yes >checking for openpty... yes >checking for setenv... yes >checking for fork... yes >checking for execve... yes >checking for waitpid... yes >checking for atexit... yes >checking for htonl define... no >checking for htonl... yes >checking whether va_copy is declared... yes >checking whether __va_copy is declared... yes >checking whether __func__ is declared... yes > >============================================================================ >== System-specific tests >============================================================================ >checking whether byte ordering is bigendian... no >checking if C compiler and POSIX threads work as is... yes >checking for PTHREAD_MUTEX_ERRORCHECK_NP... yes >checking for PTHREAD_MUTEX_ERRORCHECK... yes >checking for working POSIX threads package... yes >checking if threads have different pids (pthreads on linux)... no >checking whether ln -s works... yes >checking for grep that handles long lines and -e... (cached) /bin/grep >checking for egrep... (cached) /bin/grep -E >checking for pthread_setaffinity_np... yes > >============================================================================ >== Symbol visibility feature >============================================================================ >checking if x86_64-pc-linux-gnu-gcc supports -fvisibility=hidden... yes >checking whether to enable symbol visibility... yes (via -fvisibility=hidden) > >============================================================================ >== Event libraries >============================================================================ >configure: Searching for libevent in default search paths >checking for libevent cppflags... >checking for libevent ldflags... >checking for libevent libs... -levent_core -levent_pthreads >checking for libevent static libs... -levent_core -levent_pthreads >checking for event.h... yes >checking for event_config_new... yes >checking if libevent threads enabled... yes >checking for libevent pthreads support... yes >checking if libevent version is 2.0.21 or greater... yes >checking will libevent support be built... yes > >============================================================================ >== HWLOC >============================================================================ >checking for hwloc pkg-config name... hwloc >checking if hwloc pkg-config module exists... no >configure: Searching for hwloc in default search paths >checking for hwloc cppflags... >checking for hwloc ldflags... >checking for hwloc libs... -lhwloc >checking for hwloc static libs... -lhwloc >checking for hwloc.h... no >configure: WARNING: PMIx requires HWLOC topology library support, but >configure: WARNING: an adequate version of that library was not found. >configure: WARNING: Please reconfigure and point to a location where >configure: WARNING: the HWLOC library can be found. >configure: error: Cannot continue. > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sys-cluster/pmix-4.2.2/work/pmix-4.2.2/config.log > * ERROR: sys-cluster/pmix-4.2.2::gentoo failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 136: Called src_configure > * environment, line 562: Called econf '--disable-werror' '--disable-debug' '--without-munge' > * phase-helpers.sh, line 730: Called __helpers_die 'econf failed' > * isolated-functions.sh, line 112: Called die > * The specific snippet of code: > * die "$@" > * > * If you need support, post the output of `emerge --info '=sys-cluster/pmix-4.2.2::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sys-cluster/pmix-4.2.2::gentoo'`. > * The complete build log is located at '/var/log/portage/sys-cluster:pmix-4.2.2:20221207-194012.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sys-cluster/pmix-4.2.2/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sys-cluster/pmix-4.2.2/temp/environment'. > * Working directory: '/var/tmp/portage/sys-cluster/pmix-4.2.2/work/pmix-4.2.2' > * S: '/var/tmp/portage/sys-cluster/pmix-4.2.2/work/pmix-4.2.2' >
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