* Package: sci-libs/h5part-1.6.6:0 * Repository: gentoo * Maintainer: junghans@gentoo.org sci@gentoo.org * USE: elibc_glibc kernel_linux ppc userland_GNU * FEATURES: compressdebug network-sandbox preserve-libs sandbox splitdebug test userpriv usersandbox >>> Unpacking source... >>> Unpacking H5Part-1.6.6.tar.gz to /var/tmp/portage/sci-libs/h5part-1.6.6/work >>> Source unpacked in /var/tmp/portage/sci-libs/h5part-1.6.6/work >>> Preparing source in /var/tmp/portage/sci-libs/h5part-1.6.6/work/H5Part-1.6.6 ... * Applying h5part-1.6.6-mpio.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-libs/h5part-1.6.6/work/H5Part-1.6.6 ... * econf: updating H5Part-1.6.6/config.guess with /usr/share/gnuconfig/config.guess * econf: updating H5Part-1.6.6/config.sub with /usr/share/gnuconfig/config.sub ./configure --prefix=/usr --build=powerpc-unknown-linux-gnu --host=powerpc-unknown-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --docdir=/usr/share/doc/h5part-1.6.6 --htmldir=/usr/share/doc/h5part-1.6.6/html --libdir=/usr/lib --enable-parallel --enable-shared --disable-static CC=mpicc CXX=mpicxx checking for a BSD-compatible install... /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking build system type... powerpc-unknown-linux-gnu checking host system type... powerpc-unknown-linux-gnu checking whether make sets $(MAKE)... (cached) yes checking for powerpc-unknown-linux-gnu-mpicc... mpicc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of mpicc... none checking whether we are using the GNU C++ compiler... yes checking whether mpicxx accepts -g... yes checking dependency style of mpicxx... none checking for a BSD-compatible install... /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c checking for gawk... (cached) gawk checking if debug is enabled... no checking if fortran interface enabled... no checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mpicc... /usr/powerpc-unknown-linux-gnu/bin/ld checking if the linker (/usr/powerpc-unknown-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/powerpc-unknown-linux-gnu/bin/ld option to reload object files... -r checking for powerpc-unknown-linux-gnu-objdump... powerpc-unknown-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for powerpc-unknown-linux-gnu-ar... powerpc-unknown-linux-gnu-ar checking for powerpc-unknown-linux-gnu-strip... powerpc-unknown-linux-gnu-strip checking for powerpc-unknown-linux-gnu-ranlib... powerpc-unknown-linux-gnu-ranlib checking command to parse /usr/bin/nm -B output from mpicc object... ok checking how to run the C preprocessor... mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... no checking for mpicc option to produce PIC... -fPIC -DPIC checking if mpicc PIC flag -fPIC -DPIC works... yes checking if mpicc static flag -static works... no checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/usr/powerpc-unknown-linux-gnu/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... mpicxx -E checking for ld used by mpicxx... /usr/powerpc-unknown-linux-gnu/bin/ld checking if the linker (/usr/powerpc-unknown-linux-gnu/bin/ld) is GNU ld... yes checking whether the mpicxx linker (/usr/powerpc-unknown-linux-gnu/bin/ld) supports shared libraries... yes checking for mpicxx option to produce PIC... -fPIC -DPIC checking if mpicxx PIC flag -fPIC -DPIC works... yes checking if mpicxx static flag -static works... no checking if mpicxx supports -c -o file.o... yes checking if mpicxx supports -c -o file.o... (cached) yes checking whether the mpicxx linker (/usr/powerpc-unknown-linux-gnu/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if parallel interface enabled... yes checking if we can compile MPI code without setting flags... yes checking whether tools are enabled... no checking for HDF5 root ... checking looking in /usr ... ... found checking if we need to link to libsz ... no checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for int64_t... yes checking for size_t... yes checking for ssize_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for memset... yes checking for pow... yes checking for strchr... yes checking for strdup... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating test/Makefile config.status: creating tools/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Summary: Host OS: linux-gnu Host CPU: powerpc Host vendor: unknown Build libraries: libH5Part Build test programs: test Build tools: CC = mpicc CXX = mpicxx FC = CFLAGS = -O2 -mcpu=powerpc -mtune=powerpc -pipe -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK CXXFLAGS = -O2 -mcpu=powerpc -mtune=powerpc -pipe -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK FFLAGS = -O2 -mcpu=powerpc -mtune=powerpc -pipe -DPARALLEL_IO INCLUDES = -I/usr/include LDFLAGS = -Wl,-O1 -Wl,--as-needed -L/usr/lib LIBS = -lhdf5 -lz -lm HDF5ROOT = /usr >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-libs/h5part-1.6.6/work/H5Part-1.6.6 ... make --jobs=16 --load-average=15 make all-recursive make[1]: Entering directory '/var/tmp/portage/sci-libs/h5part-1.6.6/work/H5Part-1.6.6' Making all in doc make[2]: Entering directory '/var/tmp/portage/sci-libs/h5part-1.6.6/work/H5Part-1.6.6/doc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sci-libs/h5part-1.6.6/work/H5Part-1.6.6/doc' Making all in src make[2]: Entering directory '/var/tmp/portage/sci-libs/h5part-1.6.6/work/H5Part-1.6.6/src' /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -O2 -mcpu=powerpc -mtune=powerpc -pipe -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK -c -o H5Part.lo H5Part.c libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -O2 -mcpu=powerpc -mtune=powerpc -pipe -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK -c H5Part.c -fPIC -DPIC -o .libs/H5Part.o In file included from /usr/include/H5public.h:32, from /usr/include/hdf5.h:22, from H5Part.c:82: H5Part.c: In function '_H5Part_iteration_operator2': H5Part.c:2095:11: error: too few arguments to function 'H5Oget_info_by_name3' 2095 | if( H5Oget_info_by_name( group_id, member_name, &objinfo, H5P_DEFAULT ) < 0 ) { | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/H5Apublic.h:22, from /usr/include/hdf5.h:23: /usr/include/H5Opublic.h:521:15: note: declared here 521 | H5_DLL herr_t H5Oget_info_by_name3(hid_t loc_id, const char *name, H5O_info2_t *oinfo, unsigned fields, | ^~~~~~~~~~~~~~~~~~~~ H5Part.c:2145:21: error: too few arguments to function 'H5Oget_info3' 2145 | else if ( H5Oget_info ( obj_id, &objinfo ) < 0 ) { | ^~~~~~~~~~~ /usr/include/H5Opublic.h:484:15: note: declared here 484 | H5_DLL herr_t H5Oget_info3(hid_t loc_id, H5O_info2_t *oinfo, unsigned fields); | ^~~~~~~~~~~~ make[2]: *** [Makefile:385: H5Part.lo] Error 1 make[2]: Leaving directory '/var/tmp/portage/sci-libs/h5part-1.6.6/work/H5Part-1.6.6/src' make[1]: *** [Makefile:284: all-recursive] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-libs/h5part-1.6.6/work/H5Part-1.6.6' make: *** [Makefile:214: all] Error 2 * ERROR: sci-libs/h5part-1.6.6::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-libs/h5part-1.6.6::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-libs/h5part-1.6.6::gentoo'`. * The complete build log is located at '/var/tmp/portage/sci-libs/h5part-1.6.6/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/h5part-1.6.6/temp/environment'. * Working directory: '/var/tmp/portage/sci-libs/h5part-1.6.6/work/H5Part-1.6.6' * S: '/var/tmp/portage/sci-libs/h5part-1.6.6/work/H5Part-1.6.6'