* Package: dev-libs/igraph-0.9.4:0/0 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking igraph-0.9.4.tar.gz to /var/tmp/portage/dev-libs/igraph-0.9.4/work >>> Source unpacked in /var/tmp/portage/dev-libs/igraph-0.9.4/work >>> Preparing source in /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4 ... * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4" * Build directory (BUILD_DIR): "/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build" * Applying igraph-0.9.2-disable-broken-tests.patch ... [ ok ] >>> Source prepared. * Clang 16 testing: this build is using a /etc/portage/bashrc hook! >>> Configuring source in /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4 ... * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4" * Build directory (BUILD_DIR): "/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build" cmake -C /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DUSE_CCACHE=OFF -DIGRAPH_GLPK_SUPPORT=ON -DIGRAPH_GRAPHML_SUPPORT=ON -DIGRAPH_USE_INTERNAL_ARPACK=OFF -DIGRAPH_USE_INTERNAL_BLAS=OFF -DIGRAPH_USE_INTERNAL_CXSPARSE=OFF -DIGRAPH_USE_INTERNAL_GLPK=OFF -DIGRAPH_USE_INTERNAL_GMP=OFF -DIGRAPH_USE_INTERNAL_LAPACK=OFF -DIGRAPH_ENABLE_TLS=no -DBUILD_TESTING=no -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build/gentoo_toolchain.cmake /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4 loading initial cache file /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build/gentoo_common_config.cmake -- Version number: 0.9.4 -- The C compiler identification is Clang 15.0.4 -- The CXX compiler identification is Clang 15.0.4 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /var/tmp/portage/dev-libs/igraph-0.9.4/temp/clang-wrappers/clang - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/lib/llvm/15/bin/clang++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test COMPILER_SUPPORTS_NO_VARARGS_FLAG -- Performing Test COMPILER_SUPPORTS_NO_VARARGS_FLAG - Success -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found OpenMP_C: -fopenmp=libomp (found version "5.0") -- Found OpenMP_CXX: -fopenmp=libomp (found version "5.0") -- Found OpenMP: TRUE (found version "5.0") -- Found CXSparse: /usr/include (found version "3.2.0") -- Found ARPACK: /usr/lib64/libarpack.so -- Found GMP: /usr/lib64/libgmp.so -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.10.3") -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Found BISON: /usr/bin/bison (found version "3.8.2") -- Looking for expm1 -- Looking for expm1 - not found -- Looking for fmin -- Looking for fmin - not found -- Looking for finite -- Looking for finite - found -- Looking for isfinite -- Looking for isfinite - found -- Looking for log2 -- Looking for log2 - not found -- Looking for log1p -- Looking for log1p - not found -- Looking for rint -- Looking for rint - not found -- Looking for rintf -- Looking for rintf - not found -- Looking for round -- Looking for round - not found -- Looking for stpcpy -- Looking for stpcpy - found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for _stricmp -- Looking for _stricmp - not found -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found Python3: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter -- -- -----[ Build configuration ]---- -- Version: 0.9.4 -- CMake build type: Gentoo -- Library type: shared -- Compiler cache: disabled -- -- ----------[ Features ]---------- -- GLPK for optimization: yes -- Reading GraphML files: yes -- Thread-local storage: no -- Link-time optimization: no -- -- --------[ Dependencies ]-------- -- ARPACK: yes -- BISON: yes -- BLAS: yes -- CXSparse: yes -- FLEX: yes -- GLPK: yes -- GMP: yes -- LAPACK: yes -- LibXml2: yes -- OpenMP: yes -- -- -----------[ Testing ]---------- -- Diff tool: not found -- Sanitizers: none -- Code coverage: no -- Verify 'finally' stack: no -- -- --------[ Documentation ]------- -- HTML: no -- PDF: no -- -- igraph configured successfully. -- -- <<< Gentoo configuration >>> Build type Gentoo Install path /usr Compiler flags: C -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int C++ -pipe -march=native -fno-diagnostics-color -O2 Linker flags: Executable -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 Module -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 Shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -- Configuring done -- Generating done -- Build files have been written to: /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build >>> Source configured. '/var/tmp/portage/dev-libs/igraph-0.9.4/temp/clang16-errors.log' -> '/var/tmp/clang/dev-libs/igraph-0.9.4/clang16-errors.log' '/var/tmp/portage/dev-libs/igraph-0.9.4/temp/clang16-safe.log' -> '/var/tmp/clang/dev-libs/igraph-0.9.4/clang16-safe.log' >>> Compiling source in /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4 ... * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4" * Build directory (BUILD_DIR): "/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build" ninja -v -j4 -l0 [1/266] /var/tmp/portage/dev-libs/igraph-0.9.4/temp/clang-wrappers/clang -DIGRAPH_STATIC -I/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/include -I/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build/include -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -fPIC -fvisibility=hidden -fno-color-diagnostics -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -fopenmp=libomp -std=gnu99 -MD -MT vendor/plfit/CMakeFiles/plfit.dir/gss.c.o -MF vendor/plfit/CMakeFiles/plfit.dir/gss.c.o.d -o vendor/plfit/CMakeFiles/plfit.dir/gss.c.o -c /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/vendor/plfit/gss.c FAILED: vendor/plfit/CMakeFiles/plfit.dir/gss.c.o /var/tmp/portage/dev-libs/igraph-0.9.4/temp/clang-wrappers/clang -DIGRAPH_STATIC -I/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/include -I/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build/include -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -fPIC -fvisibility=hidden -fno-color-diagnostics -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -fopenmp=libomp -std=gnu99 -MD -MT vendor/plfit/CMakeFiles/plfit.dir/gss.c.o -MF vendor/plfit/CMakeFiles/plfit.dir/gss.c.o.d -o vendor/plfit/CMakeFiles/plfit.dir/gss.c.o -c /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/vendor/plfit/gss.c In file included from /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/vendor/plfit/gss.c:24: /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/vendor/plfit/gss.h:132:40: error: a function declaration without a prototype is deprecated in all versions of C [-Werror,-Wstrict-prototypes] unsigned short int gss_get_warning_flag(); ^ void /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/vendor/plfit/gss.c:60:40: error: a function declaration without a prototype is deprecated in all versions of C [-Werror,-Wstrict-prototypes] unsigned short int gss_get_warning_flag() { ^ void 2 errors generated. [2/266] /var/tmp/portage/dev-libs/igraph-0.9.4/temp/clang-wrappers/clang -DIGRAPH_STATIC -I/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/include -I/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build/include -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -fPIC -fvisibility=hidden -fno-color-diagnostics -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -fopenmp=libomp -std=gnu99 -MD -MT vendor/plfit/CMakeFiles/plfit.dir/kolmogorov.c.o -MF vendor/plfit/CMakeFiles/plfit.dir/kolmogorov.c.o.d -o vendor/plfit/CMakeFiles/plfit.dir/kolmogorov.c.o -c /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/vendor/plfit/kolmogorov.c [3/266] /var/tmp/portage/dev-libs/igraph-0.9.4/temp/clang-wrappers/clang -DIGRAPH_STATIC -I/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/include -I/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build/include -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -fPIC -fvisibility=hidden -fno-color-diagnostics -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -fopenmp=libomp -std=gnu99 -MD -MT vendor/plfit/CMakeFiles/plfit.dir/hzeta.c.o -MF vendor/plfit/CMakeFiles/plfit.dir/hzeta.c.o.d -o vendor/plfit/CMakeFiles/plfit.dir/hzeta.c.o -c /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/vendor/plfit/hzeta.c [4/266] /var/tmp/portage/dev-libs/igraph-0.9.4/temp/clang-wrappers/clang -DIGRAPH_STATIC -I/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/include -I/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build/include -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -fPIC -fvisibility=hidden -fno-color-diagnostics -Werror -Wall -Wextra -pedantic -Wno-unused-function -Wno-unused-parameter -Wno-sign-compare -Wno-varargs -fopenmp=libomp -std=gnu99 -MD -MT vendor/plfit/CMakeFiles/plfit.dir/lbfgs.c.o -MF vendor/plfit/CMakeFiles/plfit.dir/lbfgs.c.o.d -o vendor/plfit/CMakeFiles/plfit.dir/lbfgs.c.o -c /var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4/vendor/plfit/lbfgs.c ninja: build stopped: subcommand failed. * ERROR: dev-libs/igraph-0.9.4::gentoo failed (compile phase): * ninja -v -j4 -l0 failed * * Call stack: * ebuild.sh, line 122: Called src_compile * environment, line 2362: Called cmake_src_compile * environment, line 980: Called cmake_build * environment, line 949: Called eninja * environment, line 1411: Called die * The specific snippet of code: * "$@" || die "${nonfatal_args[@]}" "${*} failed" * * If you need support, post the output of `emerge --info '=dev-libs/igraph-0.9.4::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-libs/igraph-0.9.4::gentoo'`. * The complete build log is located at '/var/log/portage/dev-libs:igraph-0.9.4:20221110-195220.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-libs/igraph-0.9.4/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-libs/igraph-0.9.4/temp/environment'. * Working directory: '/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4_build' * S: '/var/tmp/portage/dev-libs/igraph-0.9.4/work/igraph-0.9.4'