dev-python:netcdf4-python-1.5.8:20221108-114045.log

dev-python:netcdf4-python-1.5.8:20221108-114045.log (text/plain), 5.42 KB, created by Toralf Förster on 2022-11-08 11:48:10 UTC

 * Package:    dev-python/netcdf4-python-1.5.8:0
 * Repository: gentoo
 * Maintainer: [e-mail] [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python3_10 userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking netCDF4-1.5.8.tar.gz to /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work
>>> Source unpacked in /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work
>>> Preparing source in /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8 ...
 * Build system packages:
 *   dev-python/setuptools         : 65.5.1
>>> Source prepared.
 * Clang 16 testing: this build is using a /etc/portage/bashrc hook!
>>> Configuring source in /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8 ...
 * python3_10: running distutils-r1_run_phase distutils-r1_python_compile
python3.10 setup.py build -j 4
Package hdf5 was not found in the pkg-config search path.
Perhaps you should add the directory containing `hdf5.pc'
to the PKG_CONFIG_PATH environment variable
Package 'hdf5', required by 'virtual:world', not found
reading from setup.cfg...
using nc-config...
checking /usr/include ...
HDF5 library version: 1.12.2 headers found in /usr/include
using netcdf library version b'4.9.0'
using Cython to compile netCDF4.pyx...
netcdf lib has group rename capability
netcdf lib has nc_inq_path function
netcdf lib has nc_inq_format_extended function
netcdf lib has nc_open_mem function
netcdf lib has nc_create_mem function
netcdf lib has cdf-5 format capability
netcdf lib does not have netcdf4 parallel functions
netcdf lib does not have pnetcdf parallel functions
running build
running build_py
creating /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8-python3_10/lib/netCDF4
copying src/netCDF4/utils.py -> /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8-python3_10/lib/netCDF4
copying src/netCDF4/__init__.py -> /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8-python3_10/lib/netCDF4
warning: build_py: byte-compiling is disabled, skipping.

running build_ext
cythoning src/netCDF4/_netCDF4.pyx to src/netCDF4/_netCDF4.c
INFO: Disabling color, you really want to install colorlog.
Disabling color, you really want to install colorlog.
INFO: Pythran support for package 'scipy' will be reduced: this module is not available at runtime.
Pythran support for package 'scipy' will be reduced: this module is not available at runtime.
INFO: Pythran support for package 'scipy.special' will be reduced: this module is not available at runtime.
Pythran support for package 'scipy.special' will be reduced: this module is not available at runtime.
/usr/lib/python3.10/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8/src/netCDF4/_netCDF4.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
error: Command "clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/include -I/usr/lib/python3.10/site-packages/numpy/core/include -Iinclude -I/usr/include/python3.10 -c src/netCDF4/_netCDF4.c -o /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8-python3_10/temp.linux-x86_64-3.10/src/netCDF4/_netCDF4.o" failed with exit status 1
 * ERROR: dev-python/netcdf4-python-1.5.8::gentoo failed (compile phase):
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line  122:  Called src_compile
 *   environment, line 3528:  Called distutils-r1_src_compile
 *   environment, line 1592:  Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile'
 *   environment, line  725:  Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 3211:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 2617:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 2615:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 1052:  Called distutils-r1_run_phase 'distutils-r1_python_compile'
 *   environment, line 1574:  Called distutils-r1_python_compile
 *   environment, line 1383:  Called esetup.py 'build' '-j' '4'
 *   environment, line 2156:  Called die
 * The specific snippet of code:
 *       "${@}" || die -n;
 * 
 * If you need support, post the output of `emerge --info '=dev-python/netcdf4-python-1.5.8::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=dev-python/netcdf4-python-1.5.8::gentoo'`.
 * The complete build log is located at '/var/log/portage/dev-python:netcdf4-python-1.5.8:20221108-114045.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-python/netcdf4-python-1.5.8/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-python/netcdf4-python-1.5.8/temp/environment'.
 * Working directory: '/var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8'
 * S: '/var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8'