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Gentoo's Bugzilla – Attachment 821371 Details for
Bug 875476
sci-biology/eugene-4.1d-r1 - ./.../markov.cc: error: cannot initialize a variable of type char with
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sci-biology:eugene-4.1d-r1:20221005-153636.log
sci-biology:eugene-4.1d-r1:20221005-153636.log (text/plain), 22.85 KB, created by
Toralf Förster
on 2022-10-05 18:14:17 UTC
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hide
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Description:
sci-biology:eugene-4.1d-r1:20221005-153636.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2022-10-05 18:14:17 UTC
Size:
22.85 KB
patch
obsolete
> * Package: sci-biology/eugene-4.1d-r1:0 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > >>>> Unpacking source... >>>> Unpacking eugene-4.1d.tar.gz to /var/tmp/portage/sci-biology/eugene-4.1d-r1/work >>>> Source unpacked in /var/tmp/portage/sci-biology/eugene-4.1d-r1/work >>>> Preparing source in /var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d ... > * Applying eugene-3.6-overflow.patch ... > [ ok ] > * Applying eugene-3.6-plugins.patch ... > [ ok ] > * Applying eugene-4.1-format-security.patch ... > [ ok ] > * Applying eugene-4.1d-fix-c++14.patch ... > [ ok ] > * Applying eugene-4.1d-Wformat.patch ... > [ ok ] > * Applying eugene-4.1d-portable-getopt.patch ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d' ... > * Running 'aclocal --system-acdir=/var/tmp/portage/sci-biology/eugene-4.1d-r1/temp/aclocal' ... > [ ok ] > * Running 'autoconf --force' ... > [ ok ] > * Running 'autoheader' ... > [ ok ] > * Running 'automake --add-missing --copy --force-missing' ... > [ ok ] > * Running elibtoolize in: eugene-4.1d/ >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d ... > * econf: updating eugene-4.1d/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating eugene-4.1d/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating eugene-4.1d/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating eugene-4.1d/config/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/eugene-4.1d-r1 --htmldir=/usr/share/doc/eugene-4.1d-r1/html --libdir=/usr/lib64 >checking for a BSD-compatible install... /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a race-free mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether the C++ compiler works... yes >checking for C++ compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether the compiler supports GNU C++... yes >checking whether clang++ accepts -g... yes >checking for clang++ option to enable C++11 features... none needed >checking whether make supports the include directive... yes (GNU style) >checking dependency style of clang++... none >checking for x86_64-pc-linux-gnu-gcc... clang >checking whether the compiler supports GNU C... yes >checking whether clang accepts -g... yes >checking for clang option to enable C11 features... none needed >checking whether clang understands -c and -o together... yes >checking dependency style of clang... none >checking for gawk... (cached) gawk >checking whether ln -s works... yes >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking the archiver (x86_64-pc-linux-gnu-ar) interface... ar >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking for main in -lc... yes >checking for main in -ldl... yes >checking for main in -lgcc... yes >checking for main in -lgd... yes >checking for main in -lm... yes >checking for main in -lpng... yes >checking for main in -lz... yes >checking for stdio.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for strings.h... yes >checking for sys/stat.h... yes >checking for sys/types.h... yes >checking for unistd.h... yes >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for netdb.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for strings.h... (cached) yes >checking for unistd.h... (cached) yes >checking for values.h... yes >checking for getopt.h... yes >checking for an ANSI C-conforming const... yes >checking for inline... inline >checking whether struct tm is in sys/time.h or time.h... time.h >checking for size_t... yes >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking for GNU libc compatible malloc... yes >checking whether lstat correctly handles trailing slash... yes >checking whether stat accepts an empty string... no >checking for floor... yes >checking for pow... yes >checking for sqrt... yes >checking for strchr... yes >checking for strspn... yes >checking for uname... yes >checking for getopt... yes >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating README >config.status: creating src/Makefile >config.status: creating src/GDIF/Makefile >config.status: creating src/Parametrization/Makefile >config.status: creating src/SensorPlugins/Makefile >config.status: creating src/SensorPlugins/0_SensorTk/Makefile >config.status: creating src/SensorPlugins/0_SensorTk/GetData/Makefile >config.status: creating src/SensorPlugins/AnnotaStruct/Makefile >config.status: creating src/SensorPlugins/BlastX/Makefile >config.status: creating src/SensorPlugins/Est/Makefile >config.status: creating src/SensorPlugins/EuStop/Makefile >config.status: creating src/SensorPlugins/FrameShift/Makefile >config.status: creating src/SensorPlugins/GCPlot/Makefile >config.status: creating src/SensorPlugins/GFF/Makefile >config.status: creating src/SensorPlugins/GSplicer/Makefile >config.status: creating src/SensorPlugins/Homology/Makefile >config.status: creating src/SensorPlugins/IfElse/Makefile >config.status: creating src/SensorPlugins/MarkovConst/Makefile >config.status: creating src/SensorPlugins/MarkovIMM/Makefile >config.status: creating src/SensorPlugins/MarkovIMM/GetData/Makefile >config.status: creating src/SensorPlugins/MarkovProt/Makefile >config.status: creating src/SensorPlugins/MarkovProt/GetData/Makefile >config.status: creating src/SensorPlugins/NcRNA/Makefile >config.status: creating src/SensorPlugins/NG2/Makefile >config.status: creating src/SensorPlugins/NStart/Makefile >config.status: creating src/SensorPlugins/NStretch/Makefile >config.status: creating src/SensorPlugins/PatConst/Makefile >config.status: creating src/SensorPlugins/PepSignal/Makefile >config.status: creating src/SensorPlugins/ProStart/Makefile >config.status: creating src/SensorPlugins/Plotter/Makefile >config.status: creating src/SensorPlugins/QualData/Makefile >config.status: creating src/SensorPlugins/Repeat/Makefile >config.status: creating src/SensorPlugins/RibosomalFrameShift/Makefile >config.status: creating src/SensorPlugins/Riken/Makefile >config.status: creating src/SensorPlugins/SMachine/Makefile >config.status: creating src/SensorPlugins/SPred/Makefile >config.status: creating src/SensorPlugins/SpliceWAM/Makefile >config.status: creating src/SensorPlugins/StartWAM/Makefile >config.status: creating src/SensorPlugins/Tester/Makefile >config.status: creating src/SensorPlugins/Transcript/Makefile >config.status: creating plugins/Makefile >config.status: creating doc/Makefile >config.status: creating config.h >config.status: executing depfiles commands >>>> Source configured. >'/var/tmp/portage/sci-biology/eugene-4.1d-r1/temp/clang14.log' -> '/var/tmp/clang/sci-biology/eugene-4.1d-r1/clang14.log' >'/var/tmp/portage/sci-biology/eugene-4.1d-r1/temp/clang15.log' -> '/var/tmp/clang/sci-biology/eugene-4.1d-r1/clang15.log' >>>> Compiling source in /var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d ... >make -j4 >make all-recursive >make[1]: Entering directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d' >Making all in src >make[2]: Entering directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src' >Making all in Parametrization >make[3]: Entering directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src/Parametrization' >clang++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -pipe -march=native -fno-diagnostics-color -O2 -c -o ParaOptimization.o ParaOptimization.cc >clang++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -pipe -march=native -fno-diagnostics-color -O2 -c -o OptiAlgorithm.o OptiAlgorithm.cc >clang++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -pipe -march=native -fno-diagnostics-color -O2 -c -o Random.o Random.cc >clang++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -pipe -march=native -fno-diagnostics-color -O2 -c -o LineSearch.o LineSearch.cc >clang-15clang-15clang-15: : : warning: warning: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument]argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument]argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] > > >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -pipe -march=native -fno-diagnostics-color -O2 -c -o Genetic.o Genetic.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -pipe -march=native -fno-diagnostics-color -O2 -c -o CrossingOver.o CrossingOver.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -pipe -march=native -fno-diagnostics-color -O2 -c -o Mutating.o Mutating.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -pipe -march=native -fno-diagnostics-color -O2 -c -o Scaling.o Scaling.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -pipe -march=native -fno-diagnostics-color -O2 -c -o Selecting.o Selecting.cc >clang++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -pipe -march=native -fno-diagnostics-color -O2 -c -o Sharing.o Sharing.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -pipe -march=native -fno-diagnostics-color -O2 -c -o SimulatedAnnealing.o SimulatedAnnealing.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -pipe -march=native -fno-diagnostics-color -O2 -c -o Chromosome.o Chromosome.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >rm -f libParametrization.a >x86_64-pc-linux-gnu-ar cru libParametrization.a ParaOptimization.o OptiAlgorithm.o Random.o LineSearch.o Genetic.o CrossingOver.o Mutating.o Scaling.o Selecting.o Sharing.o SimulatedAnnealing.o Chromosome.o >x86_64-pc-linux-gnu-ranlib libParametrization.a >make[3]: Leaving directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src/Parametrization' >Making all in GDIF >make[3]: Entering directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src/GDIF' >clang -DHAVE_CONFIG_H -I. -I../.. -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o gdIF.o gdIF.c >rm -f libGDIF.a >x86_64-pc-linux-gnu-ar cru libGDIF.a gdIF.o >x86_64-pc-linux-gnu-ranlib libGDIF.a >make[3]: Leaving directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src/GDIF' >Making all in . >make[3]: Entering directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src' >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o AltEst.o AltEst.cc >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o Attributes.o Attributes.cc >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o BackP.o BackP.cc >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o DAG.o DAG.cc >clang-15clang-15: : warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >AltEst.cc:317:13: warning: add explicit braces to avoid dangling else > [-Wdangling-else] > else return false; > ^ >DAG.cc:1309:17: warning: equality comparison with extraneous parentheses > [-Wparentheses-equality] > if ((FrameF == k)) > ~~~~~~~^~~~ >DAG.cc:1309:17: note: remove extraneous parentheses around the comparison to > silence this warning > if ((FrameF == k)) > ~ ^ ~ >DAG.cc:1309:17: note: use '=' to turn this equality comparison into an > assignment > if ((FrameF == k)) > ^~ > = >DAG.cc:1511:17: warning: equality comparison with extraneous parentheses > [-Wparentheses-equality] > if ((FrameR == k)) > ~~~~~~~^~~~ >DAG.cc:1511:17: note: remove extraneous parentheses around the comparison to > silence this warning > if ((FrameR == k)) > ~ ^ ~ >DAG.cc:1511:17: note: use '=' to turn this equality comparison into an > assignment > if ((FrameR == k)) > ^~ > = >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o DNASeq.o DNASeq.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o Dll.o Dll.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >1 warning generated. >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o EuGene.o EuGene.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o Gap.o Gap.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o GeneFeature.o GeneFeature.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o GeneFeatureSet.o GeneFeatureSet.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o Gff3Line.o Gff3Line.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >2 warnings generated. >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o Hits.o Hits.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o Locus.o Locus.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o MSensor.o MSensor.cc >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o Param.o Param.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o PenaltyDist.o PenaltyDist.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o Prediction.o Prediction.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o Range.o Range.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o Sensor.o Sensor.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o State.o State.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >Prediction.cc:2459:12: warning: data argument not used by format string > [-Wformat-extra-args] > PAR.getC ( "EuGene.version" ), PAR.getC ( "EuGene.orga... > ^ >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o SoTerms.o SoTerms.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o System.o System.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >State.cc:399:1: warning: non-void function does not return a value in all > control paths [-Wreturn-type] >} >^ >State.cc:418:1: warning: non-void function does not return a value in all > control paths [-Wreturn-type] >} >^ >2 warnings generated. >clang++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -c -o Target.o Target.cc >clang-15: warning: argument unused during compilation: '-rdynamic' [-Wunused-command-line-argument] >1 warning generated. >clang++ -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -DLIB_DIR=\"/usr/lib64\" -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o eugene AltEst.o Attributes.o BackP.o DAG.o DNASeq.o Dll.o EuGene.o Gap.o GeneFeature.o GeneFeatureSet.o Gff3Line.o Hits.o Locus.o MSensor.o Param.o PenaltyDist.o Prediction.o Range.o Sensor.o State.o SoTerms.o System.o Target.o Parametrization/libParametrization.a GDIF/libGDIF.a -ldl -lz -lpng -lm -lgd -lgcc -ldl -lc >make[3]: Leaving directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src' >Making all in SensorPlugins >make[3]: Entering directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src/SensorPlugins' >Making all in 0_SensorTk >make[4]: Entering directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src/SensorPlugins/0_SensorTk' >Making all in GetData >make[5]: Entering directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src/SensorPlugins/0_SensorTk/GetData' >clang++ -DHAVE_CONFIG_H -I. -I../../../.. -pipe -march=native -fno-diagnostics-color -O2 -c -o WAMbuilder.o WAMbuilder.cc >In file included from WAMbuilder.cc:31: >./../markov.cc:793:9: error: cannot initialize a variable of type 'char *' with > an lvalue of type 'const char *' > char* codegenetique=CODEGENETIQUE; > ^ ~~~~~~~~~~~~~ >1 error generated. >make[5]: *** [Makefile:393: WAMbuilder.o] Error 1 >make[5]: Leaving directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src/SensorPlugins/0_SensorTk/GetData' >make[4]: *** [Makefile:435: all-recursive] Error 1 >make[4]: Leaving directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src/SensorPlugins/0_SensorTk' >make[3]: *** [Makefile:348: all-recursive] Error 1 >make[3]: Leaving directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src/SensorPlugins' >make[2]: *** [Makefile:511: all-recursive] Error 1 >make[2]: Leaving directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src' >make[1]: *** [Makefile:479: all-recursive] Error 1 >make[1]: Leaving directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d' >make: *** [Makefile:418: all] Error 2 > * ERROR: sci-biology/eugene-4.1d-r1::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=sci-biology/eugene-4.1d-r1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-biology/eugene-4.1d-r1::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-biology:eugene-4.1d-r1:20221005-153636.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/eugene-4.1d-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/eugene-4.1d-r1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d' > * S: '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d' >
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