sci-biology:clustalw-mpi-0.13-r3:20221005-145621.log

sci-biology:clustalw-mpi-0.13-r3:20221005-145621.log (text/plain), 6.21 KB, created by Toralf Förster on 2022-10-05 18:13:26 UTC

 * Package:    sci-biology/clustalw-mpi-0.13-r3:0
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking clustalw-mpi-0.13.tar.gz to /var/tmp/portage/sci-biology/clustalw-mpi-0.13-r3/work
>>> Source unpacked in /var/tmp/portage/sci-biology/clustalw-mpi-0.13-r3/work
>>> Preparing source in /var/tmp/portage/sci-biology/clustalw-mpi-0.13-r3/work/clustalw-mpi-0.13 ...
 * Applying clustalw-mpi-0.13-makefile.patch ...
 [ ok ]
 * Applying clustalw-mpi-0.13-fno-common.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/clustalw-mpi-0.13-r3/work/clustalw-mpi-0.13 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/clustalw-mpi-0.13-r3/work/clustalw-mpi-0.13 ...
make -j4 
mpicc  -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c clustalw-mpi.c
mpicc  -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c interface.c
mpicc  -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c sequence.c
mpicc  -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c showpair.c
interface.c:207:20: error: non-void function 'check_param' should return a value
      [-Wreturn-type]
        if(args[0]==NULL) return;
                          ^
interface.c:513:25: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                        else {
                        ^
interface.c:537:25: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                        else {
                        ^
interface.c:561:25: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                        else {
                        ^
interface.c:824:4: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                        else {
                        ^
interface.c:844:4: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                        else {
                        ^
interface.c:874:4: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                        else {
                        ^
interface.c:894:4: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                        else {
                        ^
interface.c:1484:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else 
                ^
interface.c:1493:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else {
                ^
interface.c:1510:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else 
                ^
interface.c:1519:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else 
                ^
interface.c:1528:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else  {
                ^
interface.c:1547:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else  {
                ^
interface.c:1566:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else if(profile_type == SEQUENCE) {
                ^
interface.c:1590:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else if(profile_type == SEQUENCE) {
                ^
interface.c:1613:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else if(profile_type == SEQUENCE) {
                ^
interface.c:1637:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else if(profile_type == SEQUENCE) {
                ^
mpicc  -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c malign.c
interface.c:3579:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else {
                ^
interface.c:3598:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else
                ^
interface.c:3608:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else
                ^
interface.c:3618:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else
                ^
interface.c:3628:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else
                ^
interface.c:3638:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else
                ^
interface.c:3949:3: warning: add explicit braces to avoid dangling else
      [-Wdangling-else]
                else           fprintf(parout,"-case=upper \\\n");
                ^
interface.c:3976:4: error: non-void function 'myexit' should return a value
      [-Wreturn-type]
   return;
   ^
24 warnings and 2 errors generated.
make: *** [Makefile:36: interface.o] Error 1
make: *** Waiting for unfinished jobs....
 * ERROR: sci-biology/clustalw-mpi-0.13-r3::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/clustalw-mpi-0.13-r3::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/clustalw-mpi-0.13-r3::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:clustalw-mpi-0.13-r3:20221005-145621.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/clustalw-mpi-0.13-r3/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/clustalw-mpi-0.13-r3/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/clustalw-mpi-0.13-r3/work/clustalw-mpi-0.13'
 * S: '/var/tmp/portage/sci-biology/clustalw-mpi-0.13-r3/work/clustalw-mpi-0.13'