sci-biology:poa-2-r1:20221004-100428.log

sci-biology:poa-2-r1:20221004-100428.log (text/plain), 35.46 KB, created by Toralf Förster on 2022-10-04 16:39:05 UTC

 * Package:    sci-biology/poa-2-r1:0
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking poaV2.tar.gz to /var/tmp/portage/sci-biology/poa-2-r1/work
>>> Source unpacked in /var/tmp/portage/sci-biology/poa-2-r1/work
>>> Preparing source in /var/tmp/portage/sci-biology/poa-2-r1/work/poaV2 ...
 * Applying poa-2-respect-flags.patch ...
 [ ok ]
 * Applying poa-2-fno-common.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/poa-2-r1/work/poaV2 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/poa-2-r1/work/poaV2 ...
make -j4 poa 
x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.  -c -o align_score.o align_score.c
x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.  -c -o main.o main.c
x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.  -c -o black_flag.o black_flag.c
x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.  -c -o seq_util.o seq_util.c
In file included from black_flag.c:4:
black_flag.c: In function ‘black_flag_init_args’:
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
black_flag.c:109:3: note: in expansion of macro ‘CALLOC’
  109 |   CALLOC(Program_name,len,char);
      |   ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
In file included from lpo.h:6,
                 from main.c:3:
main.c: In function ‘main’:
./default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
main.c:183:3: note: in expansion of macro ‘CALLOC’
  183 |   CALLOC (input_seqs, max_input_seqs, LPOSequence_T *);
      |   ^~~~~~
./default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
./default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
main.c:221:9: note: in expansion of macro ‘REALLOC’
  221 |         REALLOC (input_seqs, max_input_seqs, LPOSequence_T *);
      |         ^~~~~~~
./default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
In file included from ./default.h:16:
main.c:225:30: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘FILE *’ [-Wformat=]
  225 |       WARN_MSG(USERR,(ERRTXT,"Error reading PO list file %s.\nExiting",
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  226 |                       po_list_file),"$Revision: 1.2.2.9 $");
      |                       ~~~~~~~~~~~~
      |                       |
      |                       FILE *
./black_flag.h:212:10: note: in definition of macro ‘WARN_MSG’
  212 | (sprintf MESSAGE,\
      |          ^~~~~~~
main.c:225:59: note: format string is defined here
  225 |       WARN_MSG(USERR,(ERRTXT,"Error reading PO list file %s.\nExiting",
      |                                                          ~^
      |                                                           |
      |                                                           char *
./default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
main.c:254:9: note: in expansion of macro ‘REALLOC’
  254 |         REALLOC (input_seqs, max_input_seqs, LPOSequence_T *);
      |         ^~~~~~~
./default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
In file included from seq_util.c:2:
seq_util.c: In function ‘read_score_matrix’:
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
seq_util.c:170:3: note: in expansion of macro ‘CALLOC’
  170 |   CALLOC (m->gap_penalty_x, m->max_gap_length+2, LPOScore_T);
      |   ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
seq_util.c:171:3: note: in expansion of macro ‘CALLOC’
  171 |   CALLOC (m->gap_penalty_y, m->max_gap_length+2, LPOScore_T);
      |   ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.  -c -o fasta_format.o fasta_format.c
x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.  -c -o msa_format.o msa_format.c
fasta_format.c: In function ‘read_fasta’:
fasta_format.c:48:9: error: implicit declaration of function ‘stringptr_cat_pos’; did you mean ‘stringptr_cat’? [-Werror=implicit-function-declaration]
   48 |         stringptr_cat_pos(&tmp_seq,line,&length);
      |         ^~~~~~~~~~~~~~~~~
      |         stringptr_cat
cc1: some warnings being treated as errors
In file included from msa_format.h:17,
                 from msa_format.c:17:
msa_format.c: In function ‘read_clustal’:
make: *** [<builtin>: fasta_format.o] Error 1
make: *** Waiting for unfinished jobs....
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
msa_format.c:169:7: note: in expansion of macro ‘REALLOC’
  169 |       REALLOC (seq_names, n_seqs, char *);
      |       ^~~~~~~
default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
msa_format.c:171:7: note: in expansion of macro ‘REALLOC’
  171 |       REALLOC (seq_titles, n_seqs, char *);
      |       ^~~~~~~
default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
msa_format.c:174:7: note: in expansion of macro ‘REALLOC’
  174 |       REALLOC (aln_mat, n_seqs, char *);
      |       ^~~~~~~
default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
msa_format.c:176:7: note: in expansion of macro ‘REALLOC’
  176 |       REALLOC (aln_lengths, n_seqs, int);
      |       ^~~~~~~
default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
default.h:184:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
  184 |       fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  185 |               __FILE__,__LINE__,STRINGIFY(memptr),(NUM));   \
      |                                                   ~~~~~
      |                                                       |
      |                                                       size_t {aka long unsigned int}
default.h:184:22: note: in definition of macro ‘REALLOC’
  184 |       fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
default.h:184:68: note: format string is defined here
  184 |   fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
      |                                                               ~^
      |                                                                |
      |                                                                int
      |                                                               %ld
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
msa_format.c:185:5: note: in expansion of macro ‘REALLOC’
  185 |     REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
      |     ^~~~~~~
default.h:196:34: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                 ~^
      |                                  |
      |                                  int
      |                                 %ld
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
msa_format.c:185:5: note: in expansion of macro ‘REALLOC’
  185 |     REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
      |     ^~~~~~~
default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
msa_format.c: In function ‘read_pir’:
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
msa_format.c:248:7: note: in expansion of macro ‘REALLOC’
  248 |       REALLOC (seq_names, n_seqs, char *);
      |       ^~~~~~~
default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
msa_format.c:250:7: note: in expansion of macro ‘REALLOC’
  250 |       REALLOC (seq_titles, n_seqs, char *);
      |       ^~~~~~~
default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
msa_format.c:252:7: note: in expansion of macro ‘REALLOC’
  252 |       REALLOC (aln_mat, n_seqs, char *);
      |       ^~~~~~~
default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
msa_format.c:254:7: note: in expansion of macro ‘REALLOC’
  254 |       REALLOC (aln_lengths, n_seqs, int);
      |       ^~~~~~~
default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
default.h:184:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
  184 |       fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  185 |               __FILE__,__LINE__,STRINGIFY(memptr),(NUM));   \
      |                                                   ~~~~~
default.h:184:22: note: in definition of macro ‘REALLOC’
  184 |       fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
default.h:184:68: note: format string is defined here
  184 |   fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\
      |                                                               ~^
      |                                                                |
      |                                                                int
      |                                                               %ld
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~
msa_format.c:268:7: note: in expansion of macro ‘REALLOC’
  268 |       REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
      |       ^~~~~~~
default.h:196:34: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                 ~^
      |                                  |
      |                                  int
      |                                 %ld
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
msa_format.c:268:7: note: in expansion of macro ‘REALLOC’
  268 |       REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char);
      |       ^~~~~~~
default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
msa_format.c: In function ‘lpo_from_aln_mat’:
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
msa_format.c:318:3: note: in expansion of macro ‘CALLOC’
  318 |   CALLOC (column_ids, n_seqs+1, int *);
      |   ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
msa_format.c:319:3: note: in expansion of macro ‘CALLOC’
  319 |   CALLOC (res_ids, n_seqs+1, int *);
      |   ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
msa_format.c:326:5: note: in expansion of macro ‘CALLOC’
  326 |     CALLOC (column_ids[i], max_aln_length, int);
      |     ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
msa_format.c:327:5: note: in expansion of macro ‘CALLOC’
  327 |     CALLOC (res_ids[i], max_aln_length, int);
      |     ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
msa_format.c:334:3: note: in expansion of macro ‘CALLOC’
  334 |   CALLOC (consens_row, max_aln_length, char);
      |   ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
msa_format.c:347:3: note: in expansion of macro ‘CALLOC’
  347 |   CALLOC (lposeq, 1, LPOSequence_T);
      |   ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
msa_format.c:351:3: note: in expansion of macro ‘CALLOC’
  351 |   CALLOC (lposeq->sequence, max_aln_length+1, char);
      |   ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
msa_format.c:369:3: note: in expansion of macro ‘REALLOC’
  369 |   REALLOC (lposeq->sequence, len+1, char);
      |   ^~~~~~~
default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
msa_format.c:375:5: note: in expansion of macro ‘CALLOC’
  375 |     CALLOC (curr_seq, 1, LPOSequence_T);
      |     ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
msa_format.c:380:5: note: in expansion of macro ‘CALLOC’
  380 |     CALLOC (curr_seq->sequence, aln_lengths[i]+1, char);
      |     ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~       ~~~~~~~~~~~~~
      |                                                         |
      |                                                         long unsigned int
msa_format.c:398:5: note: in expansion of macro ‘REALLOC’
  398 |     REALLOC (curr_seq->sequence, len+1, char);
      |     ^~~~~~~
default.h:196:39: note: format string is defined here
  196 |       fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE));   \
      |                                      ~^
      |                                       |
      |                                       int
      |                                      %ld
msa_format.c:404:5: error: implicit declaration of function ‘build_seq_to_po_index’ [-Werror=implicit-function-declaration]
  404 |     build_seq_to_po_index (lposeq);
      |     ^~~~~~~~~~~~~~~~~~~~~
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
msa_format.c:406:5: note: in expansion of macro ‘CALLOC’
  406 |     CALLOC (al_x, len, int);
      |     ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
msa_format.c:407:5: note: in expansion of macro ‘CALLOC’
  407 |     CALLOC (al_y, lposeq->length, int);
      |     ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
msa_format.c:428:5: error: implicit declaration of function ‘fuse_ring_identities’ [-Werror=implicit-function-declaration]
  428 |     fuse_ring_identities (lposeq->length, lposeq->letter,
      |     ^~~~~~~~~~~~~~~~~~~~
msa_format.c: In function ‘filter_sequence_set’:
default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~     ~~~~~~~~~~~~~
      |                                                     |
      |                                                     long unsigned int
msa_format.c:485:3: note: in expansion of macro ‘CALLOC’
  485 |   CALLOC (keep_seq, n_seqs, int);
      |   ^~~~~~
default.h:155:37: note: format string is defined here
  155 |     fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE));   \
      |                                    ~^
      |                                     |
      |                                     int
      |                                    %ld
cc1: some warnings being treated as errors
make: *** [<builtin>: msa_format.o] Error 1
 * ERROR: sci-biology/poa-2-r1::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/poa-2-r1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/poa-2-r1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:poa-2-r1:20221004-100428.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/poa-2-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/poa-2-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/poa-2-r1/work/poaV2'
 * S: '/var/tmp/portage/sci-biology/poa-2-r1/work/poaV2'