* Package: sci-biology/stride-20011129-r1:0 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking stride-20011129.tar.gz to /var/tmp/portage/sci-biology/stride-20011129-r1/work >>> Unpacking stride-20060723-update.patch.bz2 to /var/tmp/portage/sci-biology/stride-20011129-r1/work >>> Source unpacked in /var/tmp/portage/sci-biology/stride-20011129-r1/work >>> Preparing source in /var/tmp/portage/sci-biology/stride-20011129-r1/work ... * Applying stride-20060723-update.patch ... [ ok ] * Applying stride-20011129-fix-buildsystem.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/stride-20011129-r1/work ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/stride-20011129-r1/work ... make -j4 clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o stride.o stride.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o splitstr.o splitstr.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o rdpdb.o rdpdb.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o initchn.o initchn.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o geometry.o geometry.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o thr2one.o thr2one.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o one2thr.o one2thr.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o filename.o filename.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o tolostr.o tolostr.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o strutil.o strutil.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o place_h.o place_h.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o hbenergy.o hbenergy.c place_h.c:19:2: warning: ignoring return value of function declared with pure attribute [-Wunused-value] strcmp(r->AtomType[H],"H"); ^~~~~~ ~~~~~~~~~~~~~~~~~~ clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o memory.o memory.c 1 warning generated. clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o helix.o helix.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o sheet.o sheet.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o rdmap.o rdmap.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o phipsi.o phipsi.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o command.o command.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o molscr.o molscr.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o die.o die.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o hydrbond.o hydrbond.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o mergepat.o mergepat.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o fillasn.o fillasn.c hydrbond.c:345:16: warning: passing arguments to a function without a prototype is deprecated in all versions of C and is not supported in C2x [-Wdeprecated-non-prototype] HBOND_Energy(Acc[ac]->Chain->Rsd[Acc[ac]->AA2_Res]->Coord[Acc[... ^ clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o escape.o escape.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o p_jrnl.o p_jrnl.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o p_rem.o p_rem.c 1 warning generated. clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o p_atom.o p_atom.c clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -c -o p_helix.o p_helix.c p_atom.c:12:12: error: type specifier missing, defaults to 'int'; ISO C99 and later do not support implicit int [-Werror,-Wimplicit-int] register i; ~~~~~~~~ ^ int 1 error generated. make: *** [: p_atom.o] Error 1 make: *** Waiting for unfinished jobs.... * ERROR: sci-biology/stride-20011129-r1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-biology/stride-20011129-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/stride-20011129-r1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-biology:stride-20011129-r1:20221002-134208.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/stride-20011129-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/stride-20011129-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/stride-20011129-r1/work' * S: '/var/tmp/portage/sci-biology/stride-20011129-r1/work'