sci-chemistry:prekin-6.51.081122-r1:20220918-151754.log

sci-chemistry:prekin-6.51.081122-r1:20220918-151754.log (text/plain), 8.61 KB, created by Toralf Förster on 2022-09-18 16:09:27 UTC

 * Package:    sci-chemistry/prekin-6.51.081122-r1:0
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking prekin.6.51.081122.src.tgz to /var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work/prekin.6.51.081122 ...
 * Applying 6.51.081122-Makefile.patch ...
 [ ok ]
 * Applying 6.51.081122-overflow.patch ...
 [ ok ]
 * Applying prekin-6.51.081122-fno-common.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work/prekin.6.51.081122 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work/prekin.6.51.081122 ...
make -j4 nogui 
clang -pipe -march=native -fno-diagnostics-color -O2 -D_GLIBCXX_ASSERTIONS -Werror=implicit-function-declaration -Werror=implicit-int -I/usr/X11R6/include   -D NOGUI -I/usr/X11R6/include   -c -o PKINANGL.o PKINANGL.c
clang -pipe -march=native -fno-diagnostics-color -O2 -D_GLIBCXX_ASSERTIONS -Werror=implicit-function-declaration -Werror=implicit-int -I/usr/X11R6/include   -D NOGUI -I/usr/X11R6/include   -c -o PKINCRTL.o PKINCRTL.c
clang -pipe -march=native -fno-diagnostics-color -O2 -D_GLIBCXX_ASSERTIONS -Werror=implicit-function-declaration -Werror=implicit-int -I/usr/X11R6/include   -D NOGUI -I/usr/X11R6/include   -c -o PKINCSBS.o PKINCSBS.c
clang -pipe -march=native -fno-diagnostics-color -O2 -D_GLIBCXX_ASSERTIONS -Werror=implicit-function-declaration -Werror=implicit-int -I/usr/X11R6/include   -D NOGUI -I/usr/X11R6/include   -c -o PKINCSUB.o PKINCSUB.c
In file included from PKINCRTL.c:3:
./PKIN.h:279:71: warning: '/*' within block comment [-Wcomment]
EXTERN int    Lribidentity; /*SHEET (HELIX) identities, need colorsets/*060929*/
                                                                      ^
In file included from PKINANGL.c:1:
./PKIN.h:279:71: warning: '/*' within block comment [-Wcomment]
EXTERN int    Lribidentity; /*SHEET (HELIX) identities, need colorsets/*060929*/
                                                                      ^
PKINCRTL.c:59:20: error: call to undeclared function 'TickCount'; ISO C99 and
      later do not support implicit function declarations
      [-Werror,-Wimplicit-function-declaration]
OldTickCounts[0] = TickCount(); 
                   ^
In file included from PKINCSUB.c:12:
./PKIN.h:279:71: warning: '/*' within block comment [-Wcomment]
EXTERN int    Lribidentity; /*SHEET (HELIX) identities, need colorsets/*060929*/
                                                                      ^
PKINANGL.c:155:25: warning: equality comparison with extraneous parentheses
      [-Wparentheses-equality]
         if( (atom[j][4]==' ') ) /*alt char in 5th place (index==4) of name*/
              ~~~~~~~~~~^~~~~
PKINANGL.c:155:25: note: remove extraneous parentheses around the comparison to
      silence this warning
         if( (atom[j][4]==' ') ) /*alt char in 5th place (index==4) of name*/
             ~          ^    ~
PKINANGL.c:155:25: note: use '=' to turn this equality comparison into an
      assignment
         if( (atom[j][4]==' ') ) /*alt char in 5th place (index==4) of name*/
                        ^~
                        =
PKINCRTL.c:709:42: warning: '/*' within block comment [-Wcomment]
      if(maxatm > 0) /*guess residuetype /*P,N,H,W,U, , 061006*/
                                         ^
PKINCRTL.c:1277:11: error: call to undeclared function 'getkeydownstate'; ISO
      C99 and later do not support implicit function declarations
      [-Werror,-Wimplicit-function-declaration]
      if( getkeydownstate() ) /*PKMCMAIN.C PKPCMAIN.C*/
          ^
PKINCRTL.c:1697:8: error: call to undeclared function 'AdjustMenus'; ISO C99 and
      later do not support implicit function declarations
      [-Werror,-Wimplicit-function-declaration]
       AdjustMenus();          /*____MENU.c*/
       ^
2 warnings and 3 errors generated.
In file included from PKINCSBS.c:3:
./PKIN.h:279:71: warning: '/*' within block comment [-Wcomment]
EXTERN int    Lribidentity; /*SHEET (HELIX) identities, need colorsets/*060929*/
                                                                      ^
PKINANGL.c:1443:1: error: type specifier missing, defaults to 'int'; ISO C99 and
      later do not support implicit int [-Werror,-Wimplicit-int]
constructcircle(float Cxyz[SEGMENTS][3], float Axyz[3], float Bxyz[3], f...
^
int
2 warnings and 1 error generated.
make: *** [<builtin>: PKINCRTL.o] Error 1
make: *** Waiting for unfinished jobs....
PKINCSUB.c:1945:35: warning: '/*' within block comment [-Wcomment]
   /*&&(sub[n][1]  != oldsub[1])) /*char chainID  070926*/
                                  ^
PKINCSBS.c:175:7: warning: array index 2 is past the end of the array (which
      contains 2 elements) [-Warray-bounds]
      resatomptr->subc[2] = '\0';
      ^                ~
PKINCSBS.c:8:6: note: array 'subc' declared here
     char subc[2];
     ^
PKINCSBS.c:181:7: warning: array index 2 is past the end of the array (which
      contains 2 elements) [-Warray-bounds]
      resatomptr->subc[2] = '\0';
      ^                ~
PKINCSBS.c:8:6: note: array 'subc' declared here
     char subc[2];
     ^
PKINCSBS.c:187:3: warning: array index 4 is past the end of the array (which
      contains 4 elements) [-Warray-bounds]
make: *** [<builtin>: PKINANGL.o] Error 1
  resatomptr->resc[4] = '\0';
  ^                ~
PKINCSBS.c:9:6: note: array 'resc' declared here
     char resc[4];
     ^
PKINCSUB.c:2730:30: warning: format specifies type 'int' but the argument has
      type 'char *' [-Wformat]
                 ,sub[natom],rins[natom],x[natom],y[natom],z[natom]);
                             ^~~~~~~~~~~
PKINCSBS.c:1179:33: warning: '/*' within block comment [-Wcomment]
           sprintf(cntl,"scv ");/*goes with sidechain vectors*/
                                ^
PKINCSBS.c:2808:26: warning: format string is not a string literal
      (potentially insecure) [-Wformat-security]
            sprintf(colr,colorscale[Ncolorscale].color); /*high value default*/
                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PKINCSBS.c:2808:26: note: treat the string as an argument to avoid this
            sprintf(colr,colorscale[Ncolorscale].color); /*high value default*/
                         ^
                         "%s", 
PKINCSBS.c:2813:32: warning: format string is not a string literal
      (potentially insecure) [-Wformat-security]
                  sprintf(colr,colorscale[j].color);
                               ^~~~~~~~~~~~~~~~~~~
PKINCSBS.c:2813:32: note: treat the string as an argument to avoid this
                  sprintf(colr,colorscale[j].color);
                               ^
                               "%s", 
PKINCSBS.c:3196:22: warning: format string is not a string literal
      (potentially insecure) [-Wformat-security]
       sprintf(color,colorscale[Ncolorscale].color); /*high value default*/
                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PKINCSBS.c:3196:22: note: treat the string as an argument to avoid this
       sprintf(color,colorscale[Ncolorscale].color); /*high value default*/
                     ^
                     "%s", 
PKINCSBS.c:3201:28: warning: format string is not a string literal
      (potentially insecure) [-Wformat-security]
             sprintf(color,colorscale[ncol].color);
                           ^~~~~~~~~~~~~~~~~~~~~~
PKINCSBS.c:3201:28: note: treat the string as an argument to avoid this
             sprintf(color,colorscale[ncol].color);
                           ^
                           "%s", 
3 warnings generated.
9 warnings generated.
 * ERROR: sci-chemistry/prekin-6.51.081122-r1::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-chemistry/prekin-6.51.081122-r1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-chemistry/prekin-6.51.081122-r1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-chemistry:prekin-6.51.081122-r1:20220918-151754.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work/prekin.6.51.081122'
 * S: '/var/tmp/portage/sci-chemistry/prekin-6.51.081122-r1/work/prekin.6.51.081122'