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Gentoo's Bugzilla – Attachment 795967 Details for
Bug 862441
sci-chemistry/pymol-2.5.0-r4 fails to compile (lto): ReadPARM7.h:62:16: error: type struct parm violates the C++ One Definition Rule [-Werror=odr]
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build.log
build.log (text/plain), 426.95 KB, created by
Agostino Sarubbo
on 2022-07-31 07:29:46 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2022-07-31 07:29:46 UTC
Size:
426.95 KB
patch
obsolete
> * Package: sci-chemistry/pymol-2.5.0-r1 > * Repository: gentoo > * Maintainer: sci-chemistry@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux netcdf python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/4f0dedccd0fd2a6475f311861f0367b22111c1c0 (Sat Jul 30 20:01:47 UTC 2022) >@@@@@ END @@@@@ > > > >################## ># emerge --info: # >################## >Portage 3.0.34 (python 3.10.5-final-0, default/linux/amd64/17.1, gcc-12.1.1, glibc-2.35-r8, 5.10.133-gentoo x86_64) >================================================================= >System uname: Linux-5.10.133-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-glibc2.35 >KiB Mem: 264024340 total, 232241392 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Sat, 30 Jul 2022 20:01:47 +0000 >sh bash 5.1_p16 >ld GNU ld (Gentoo 2.38 p4) 2.38 >app-misc/pax-utils: 1.3.4::gentoo >app-shells/bash: 5.1_p16::gentoo >dev-lang/perl: 5.36.0::gentoo >dev-lang/python: 3.8.13_p2::gentoo, 3.9.13::gentoo, 3.10.5::gentoo, 3.11.0_beta5::gentoo >dev-lang/rust: 1.62.1::gentoo >dev-util/cmake: 3.23.3::gentoo >dev-util/meson: 0.63.0::gentoo >sys-apps/baselayout: 2.8-r2::gentoo >sys-apps/openrc: 0.45.2::gentoo >sys-apps/sandbox: 2.29::gentoo >sys-devel/autoconf: 2.71-r1::gentoo >sys-devel/automake: 1.16.5::gentoo >sys-devel/binutils: 2.38-r2::gentoo >sys-devel/binutils-config: 5.4.1::gentoo >sys-devel/gcc: 12.1.1_p20220625::gentoo >sys-devel/gcc-config: 2.5-r1::gentoo >sys-devel/libtool: 2.4.7::gentoo >sys-devel/llvm: 14.0.6-r2::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.18-r1::gentoo (virtual/os-headers) >sys-libs/glibc: 2.35-r8::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-verify-metamanifest: yes > sync-rsync-extra-opts: > sync-rsync-verify-jobs: 1 > sync-rsync-verify-max-age: 24 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* BSD BitstreamVera HPND OFL UoI-NCSA freedist public-domain" >CBUILD="x86_64-pc-linux-gnu" >CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing" >DISTDIR="/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing" >GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" >LANG="C.UTF8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >MAKEOPTS="-j16" >PKGDIR="/root/tbci/binpkg" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >SHELL="/bin/bash" >USE="acl amd64 bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses netcdf nls nptl openmp pam pcre readline seccomp split-usr ssl unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" PYTHON_TARGETS="python3_8 python3_9 python3_10" USERLAND="GNU" >Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS > > > > > >############################## ># emerge history (qlop -mv): # >############################## >2022-07-30T21:51:17 >>> sys-devel/llvm-common-14.0.6 >2022-07-30T21:51:18 >>> sys-apps/hwdata-0.361 >2022-07-30T21:51:20 >>> x11-misc/util-macros-1.19.3 >2022-07-30T21:51:23 >>> dev-libs/vala-common-0.56.2 >2022-07-30T21:51:09 >>> sys-libs/ncurses-6.3_p20220423-r1 >2022-07-30T21:51:12 >>> app-arch/bzip2-1.0.8-r1 >2022-07-30T21:51:13 >>> dev-libs/libffi-3.4.2-r2 >2022-07-30T21:51:15 >>> app-crypt/libmd-1.0.4 >2022-07-30T21:51:21 >>> app-arch/zstd-1.5.2-r1 >2022-07-30T21:52:27 >>> sys-libs/zlib-1.2.12-r2 >2022-07-30T21:52:36 >>> dev-libs/expat-2.4.8 >2022-07-30T21:52:46 >>> dev-libs/libbsd-0.11.6 >2022-07-30T21:52:56 >>> sys-libs/mtdev-1.1.6 >2022-07-30T21:52:58 >>> x11-libs/libXau-1.0.9-r1 >2022-07-30T21:53:12 >>> x11-libs/libXdmcp-1.1.3-r1 >2022-07-30T21:53:22 >>> x11-libs/libxcb-1.15-r1 >2022-07-30T21:53:33 >>> x11-libs/libX11-1.8.1 >2022-07-30T21:53:43 >>> x11-libs/libXext-1.3.4 >2022-07-30T21:53:52 >>> x11-libs/libXrender-0.9.10-r2 >2022-07-30T21:54:00 >>> app-eselect/eselect-blas-0.2 >2022-07-30T21:54:02 >>> app-eselect/eselect-lapack-0.2 >2022-07-30T21:54:04 >>> virtual/fortran-0-r1 >2022-07-30T21:54:05 >>> dev-libs/elfutils-0.187 >2022-07-30T21:54:30 >>> virtual/libelf-3-r1 >2022-07-30T21:54:40 >>> x11-libs/xcb-util-renderutil-0.3.9-r3 >2022-07-30T21:54:42 >>> dev-util/wayland-scanner-1.21.0 >2022-07-30T21:54:44 >>> dev-libs/msgpack-3.3.0 >2022-07-30T21:54:45 >>> x11-libs/libXfixes-6.0.0 >2022-07-30T21:54:47 >>> media-libs/libjpeg-turbo-2.1.3 >2022-07-30T21:54:48 >>> media-libs/libglvnd-1.4.0 >2022-07-30T21:54:50 >>> x11-libs/xcb-util-keysyms-0.4.0-r2 >2022-07-30T21:54:53 >>> x11-libs/libXrandr-1.5.2 >2022-07-30T21:54:52 >>> x11-libs/xcb-util-wm-0.4.1-r3 >2022-07-30T21:54:55 >>> x11-libs/libXxf86vm-1.1.4-r2 >2022-07-30T21:54:56 >>> sci-libs/lapack-3.10.1 >2022-07-30T21:54:58 >>> media-libs/glm-0.9.9.8-r1 >2022-07-30T21:55:00 >>> media-gfx/imagemagick-7.1.0.44 >2022-07-30T21:55:01 >>> sci-libs/hdf5-1.12.2-r4 >2022-07-30T21:55:03 >>> dev-libs/libevdev-1.12.1 >2022-07-30T21:55:05 >>> dev-libs/double-conversion-3.2.0 >2022-07-30T21:55:08 >>> x11-libs/libxshmfence-1.3-r2 >2022-07-30T21:55:06 >>> dev-libs/icu-71.1-r1 >2022-07-30T21:55:11 >>> dev-libs/fribidi-1.0.12 >2022-07-30T21:55:13 >>> app-eselect/eselect-rust-20210703 >2022-07-30T21:55:16 >>> dev-lang/nasm-2.15.05 >2022-07-30T21:55:10 >>> x11-libs/libpciaccess-0.16-r1 >2022-07-30T21:55:15 >>> sys-apps/lsb-release-3.2 >2022-07-30T21:55:18 >>> sys-devel/llvm-14.0.6-r2 >2022-07-30T21:55:20 >>> dev-lang/python-3.10.5 >2022-07-30T21:57:55 >>> x11-libs/libXi-1.8 >2022-07-30T21:57:58 >>> virtual/jpeg-100-r1 >2022-07-30T21:58:04 >>> virtual/cblas-3.8 >2022-07-30T21:58:09 >>> media-video/mpeg-tools-1.5b-r5 >2022-07-30T21:58:15 >>> virtual/lapack-3.10 >2022-07-30T21:58:20 >>> dev-libs/mmtf-cpp-1.0.0-r1 >2022-07-30T21:58:25 >>> dev-libs/wayland-1.21.0 >2022-07-30T21:58:31 >>> dev-libs/wayland-protocols-1.26 >2022-07-30T21:58:36 >>> x11-libs/libdrm-2.4.112 >2022-07-30T21:58:41 >>> dev-lang/rust-1.62.1 >2022-07-30T21:58:47 >>> dev-qt/qtcore-5.15.5-r2 >2022-07-30T21:58:56 >>> virtual/rust-1.62.1 >2022-07-30T21:59:03 >>> dev-qt/qtxml-5.15.5 >2022-07-30T21:59:08 >>> dev-libs/libinput-1.21.0-r1 >2022-07-30T21:59:14 >>> dev-qt/qtdbus-5.15.5-r1 >2022-07-30T21:59:20 >>> sys-devel/llvmgold-14 >2022-07-30T21:59:25 >>> x11-libs/xcb-util-0.4.0-r2 >2022-07-30T21:59:31 >>> media-libs/mesa-22.1.3 >2022-07-30T21:59:36 >>> x11-libs/xcb-util-image-0.4.0-r2 >2022-07-30T21:59:43 >>> virtual/opengl-7.0-r2 >2022-07-30T21:59:49 >>> x11-libs/xcb-util-cursor-0.1.3-r4 >2022-07-30T21:59:54 >>> media-libs/glu-9.0.2 >2022-07-30T21:59:59 >>> dev-lang/tk-8.6.12 >2022-07-30T22:00:10 >>> virtual/glu-9.0-r2 >2022-07-30T22:00:13 >>> dev-tcltk/blt-2.5.3-r1 >2022-07-30T22:00:23 >>> media-libs/glew-2.2.0 >2022-07-30T22:00:27 >>> media-libs/freeglut-3.2.2 >2022-07-30T22:00:33 >>> dev-tcltk/tix-8.4.3-r2 >2022-07-30T22:00:43 >>> x11-libs/cairo-1.16.0-r5 >2022-07-30T22:00:54 >>> dev-lang/python-3.8.13_p2 >2022-07-30T22:01:13 >>> dev-lang/python-3.9.13 >2022-07-30T22:01:34 >>> app-text/docbook-xml-dtd-4.3-r2 >2022-07-30T22:01:36 >>> sci-libs/netcdf-4.9.0 >2022-07-30T22:01:38 >>> media-fonts/font-util-1.3.3 >2022-07-30T22:01:39 >>> x11-libs/libXft-2.3.4 >2022-07-30T22:01:43 >>> x11-libs/libxkbcommon-1.4.1 >2022-07-30T22:01:41 >>> dev-lang/vala-0.56.2 >2022-07-30T22:01:44 >>> dev-python/numpy-1.23.1 >2022-07-30T22:01:48 >>> dev-python/PyQt5-sip-12.10.1 >2022-07-30T22:01:46 >>> dev-python/pmw-2.0.1-r3 >2022-07-30T22:01:50 >>> dev-python/ply-3.11-r2 >2022-07-30T22:01:51 >>> dev-python/toml-0.10.2-r1 >2022-07-30T22:01:53 >>> dev-python/pygments-2.12.0-r1 >2022-07-30T22:01:57 >>> dev-python/mako-1.2.1 >2022-07-30T22:01:55 >>> dev-python/cython-0.29.32 >2022-07-30T22:02:16 >>> x11-libs/gdk-pixbuf-2.42.8 >2022-07-30T22:02:30 >>> x11-libs/pango-1.50.8 >2022-07-30T22:03:12 >>> dev-python/sip-6.6.2 >2022-07-30T22:03:20 >>> dev-python/docutils-0.19 >2022-07-30T22:03:41 >>> dev-util/gtk-update-icon-cache-3.24.31 >2022-07-30T22:03:53 >>> dev-python/PyQt-builder-1.12.2 >2022-07-30T22:04:03 >>> sci-chemistry/chemical-mime-data-0.1.94-r4 >2022-07-30T22:04:01 >>> dev-python/pyopengl-3.1.6 >2022-07-30T22:04:05 >>> gnome-base/librsvg-2.54.4 >2022-07-30T22:04:13 >>> dev-qt/qtgui-5.15.5-r1 >2022-07-30T22:05:08 >>> dev-qt/qtwidgets-5.15.5-r1 >2022-07-30T22:05:17 >>> dev-qt/qtopengl-5.15.5 >2022-07-30T22:05:28 >>> dev-python/PyQt5-5.15.6 > > > > >####################################### ># installed packages (qlist -ICvUSS): # >####################################### >acct-group/audio-0-r1:0 >acct-group/cdrom-0-r1:0 >acct-group/dialout-0-r1:0 >acct-group/disk-0-r1:0 >acct-group/input-0-r1:0 >acct-group/kmem-0-r1:0 >acct-group/kvm-0-r1:0 >acct-group/lp-0-r1:0 >acct-group/man-0-r1:0 >acct-group/messagebus-0-r1:0 >acct-group/polkitd-0-r1:0 >acct-group/portage-0:0 >acct-group/render-0-r1:0 >acct-group/sgx-0:0 >acct-group/sshd-0-r1:0 >acct-group/tape-0-r1:0 >acct-group/tty-0-r1:0 >acct-group/video-0-r1:0 >acct-user/man-1-r1:0 >acct-user/messagebus-0-r1:0 >acct-user/polkitd-0-r1:0 >acct-user/portage-0:0 >acct-user/sshd-0-r1:0 >app-admin/eselect-1.4.20:0 -doc -emacs -vim-syntax >app-admin/perl-cleaner-2.30:0 >app-arch/bzip2-1.0.8-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs -verify-sig >app-arch/gzip-1.12:0 -pic -static -verify-sig >app-arch/libarchive-3.6.1:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd >app-arch/tar-1.34:0 acl -minimal nls -selinux -verify-sig xattr >app-arch/unzip-6.0_p26:0 bzip2 -natspec unicode >app-arch/xz-utils-5.2.5-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 extra-filters nls split-usr -static-libs -verify-sig >app-arch/zstd-1.5.2-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 split-usr -static-libs threads >app-crypt/gnupg-2.3.7-r1:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server >app-crypt/gpgme-1.17.1-r1:1/11.6.15 -common-lisp cxx -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -qt5 -static-libs -test -verify-sig >app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs >app-crypt/libmd-1.0.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 >app-crypt/pinentry-1.2.0-r1:0 -caps -efl -emacs -gnome-keyring -gtk ncurses -qt5 >app-crypt/rhash-1.4.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls ssl -static-libs >app-editors/nano-6.3:0 -debug -justify -magic -minimal ncurses nls spell split-usr -static unicode >app-eselect/eselect-blas-0.2:0 >app-eselect/eselect-fontconfig-20220403:0 >app-eselect/eselect-iptables-20220320:0 >app-eselect/eselect-lapack-0.2:0 >app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0 >app-eselect/eselect-pinentry-0.7.2:0 >app-eselect/eselect-rust-20210703:0 >app-i18n/man-pages-ja-20180315-r1:0 >app-i18n/man-pages-l10n-4.14.0-r1:0 l10n_cs l10n_da l10n_de l10n_el l10n_es l10n_fi l10n_fr l10n_hu l10n_id l10n_it l10n_mk l10n_nb l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_sr l10n_sv l10n_uk l10n_vi >app-i18n/man-pages-ru-5.03.2390.2390.20191017-r1:0 >app-i18n/man-pages-zh_CN-1.6.3.6:0 >app-misc/c_rehash-1.7-r1:0 >app-misc/ca-certificates-20211016.3.80:0 -cacert >app-misc/editor-wrapper-4-r1:0 >app-misc/mime-types-2.1.53:0 -nginx >app-misc/pax-utils-1.3.4:0 -caps -debug -python python_single_target_python3_10 -python_single_target_python3_8 -python_single_target_python3_9 seccomp >app-misc/tmux-3.3a:0 -debug -selinux -systemd -utempter -vim-syntax >app-portage/eix-0.36.4:0 -debug -doc nls -sqlite >app-portage/elt-patches-20211104:0 >app-portage/gemato-16.2:0 gpg python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test -tools >app-portage/gentoolkit-0.6.1-r3:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >app-portage/portage-utils-0.94.1:0 nls openmp qmanifest qtegrity -static >app-shells/bash-5.1_p16:0 -afs -bashlogger -examples -mem-scramble net nls -plugins readline -verify-sig >app-shells/bash-completion-2.11:0 eselect -test >app-shells/gentoo-bashcomp-20190211-r1:0 >app-shells/push-3.4:0 >app-shells/quoter-4.2:0 >app-text/ansifilter-2.18:0 -qt5 >app-text/build-docbook-catalog-2.3-r1:0 >app-text/docbook-xml-dtd-4.5-r2:4.5 >app-text/docbook-xml-dtd-4.4-r3:4.4 >app-text/docbook-xml-dtd-4.3-r2:4.3 >app-text/docbook-xml-dtd-4.2-r3:4.2 >app-text/docbook-xml-dtd-4.1.2-r7:4.1.2 >app-text/docbook-xsl-stylesheets-1.79.1-r3:0 -ruby >app-text/manpager-1:0 >app-text/opensp-1.5.2-r7:0 -doc nls -static-libs -test >app-text/po4a-0.66:0 -test 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>sys-apps/dbus-1.14.0-r4:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc elogind -selinux -static-libs -systemd -test -test >sys-apps/debianutils-5.7:0 installkernel -static >sys-apps/diffutils-3.8:0 nls -static -verify-sig >sys-apps/file-5.42:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -seccomp -static-libs -verify-sig zlib >sys-apps/findutils-4.9.0:0 nls -selinux -static -test -verify-sig >sys-apps/gawk-5.1.1-r2:0 -mpfr nls readline -verify-sig >sys-apps/gentoo-functions-0.17:0 >sys-apps/grep-3.7:0 nls pcre -static -verify-sig >sys-apps/groff-1.22.4:0 -X -examples -uchardet >sys-apps/help2man-1.48.5:0 nls >sys-apps/hwdata-0.361:0 >sys-apps/install-xattr-0.8:0 >sys-apps/iproute2-5.18.0-r1:0 -atm -berkdb -bpf -caps -elf iptables 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llvm_targets_Lanai -llvm_targets_M68k llvm_targets_MSP430 llvm_targets_Mips llvm_targets_NVPTX llvm_targets_PowerPC llvm_targets_RISCV llvm_targets_Sparc llvm_targets_SystemZ llvm_targets_VE llvm_targets_WebAssembly llvm_targets_X86 llvm_targets_XCore ncurses -test -verify-sig -xar -xml -z3 >sys-devel/llvm-common-14.0.6:0 -verify-sig >sys-devel/llvmgold-14:0 >sys-devel/m4-1.4.19:0 -examples nls -verify-sig >sys-devel/make-4.3:0 -guile nls -static -verify-sig >sys-devel/patch-2.7.6-r4:0 -static -test -verify-sig xattr >sys-fs/e2fsprogs-1.46.5-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse -lto nls split-usr -static-libs -test threads tools >sys-fs/udev-init-scripts-35:0 >sys-kernel/installkernel-gentoo-5:0 -grub >sys-kernel/linux-headers-5.18-r1:0 -experimental-loong -headers-only >sys-libs/binutils-libs-2.38-r2:0/2.38 -64-bit-bfd -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cet -multitarget nls -static-libs >sys-libs/gdbm-1.23:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs -verify-sig >sys-libs/glibc-2.35-r8:2.2 -audit -caps -cet clone3 -compile-locales -crypt -custom-cflags -doc -experimental-loong -gd -headers-only multiarch multilib -multilib-bootstrap -nscd -profile -selinux ssp stack-realign static-libs -suid -systemd -systemtap -test -vanilla >sys-libs/libcap-2.65:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam split-usr -static-libs -tools >sys-libs/libseccomp-2.5.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -experimental-loong -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs -test >sys-libs/libxcrypt-4.4.28-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 compat split-usr -static-libs system -test >sys-libs/mtdev-1.1.6:0 >sys-libs/ncurses-6.3_p20220423-r1:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx -debug -doc -gpm -minimal -profile split-usr stack-realign -static-libs -test tinfo -trace -verify-sig >sys-libs/pam-1.5.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug filecaps -nis -selinux >sys-libs/readline-8.1_p2:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static-libs unicode -utils -verify-sig >sys-libs/timezone-data-2022a:0 -leaps-timezone nls -zic-slim >sys-libs/zlib-1.2.12-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs -verify-sig >sys-process/procps-3.3.17-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode >sys-process/psmisc-23.4-r1:0 -X ipv6 nls -selinux >virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/awk-1:0 >virtual/cblas-3.8:0 -eselect-ldso >virtual/dev-manager-0-r2:0 >virtual/editor-0-r3:0 >virtual/fortran-0-r1:0 openmp >virtual/glu-9.0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/jpeg-100-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/lapack-3.10:0 -eselect-ldso >virtual/libc-1-r1:0 >virtual/libcrypt-2:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/libelf-3-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libudev-232-r7:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd >virtual/man-0-r4:0 >virtual/opengl-7.0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/os-headers-0-r2:0 >virtual/package-manager-1:0 >virtual/pager-0-r1:0 >virtual/perl-Carp-1.520.0-r2:0 >virtual/perl-Compress-Raw-Bzip2-2.103.0-r2:0 >virtual/perl-Compress-Raw-Zlib-2.202.0:0 >virtual/perl-CPAN-2.330.0:0 >virtual/perl-CPAN-Meta-2.150.10-r6:0 >virtual/perl-CPAN-Meta-Requirements-2.140.0-r8:0 >virtual/perl-CPAN-Meta-YAML-0.18.0-r8:0 >virtual/perl-Data-Dumper-2.184.0:0 >virtual/perl-Digest-MD5-2.580.0-r1:0 >virtual/perl-Encode-3.170.0:0 >virtual/perl-Exporter-5.770.0:0 >virtual/perl-ExtUtils-CBuilder-0.280.236-r1:0 >virtual/perl-ExtUtils-Install-2.200.0-r1:0 >virtual/perl-ExtUtils-MakeMaker-7.640.0:0 >virtual/perl-ExtUtils-Manifest-1.730.0-r1:0 >virtual/perl-ExtUtils-ParseXS-3.450.0:0 >virtual/perl-File-Path-2.180.0-r1:0 >virtual/perl-File-Spec-3.840.0:0 >virtual/perl-File-Temp-0.231.100:0 >virtual/perl-Getopt-Long-2.520.0-r1:0 >virtual/perl-IO-1.500.0:0 >virtual/perl-IO-Compress-2.106.0:0 >virtual/perl-IO-Socket-IP-0.410.0-r1:0 >virtual/perl-JSON-PP-4.70.0:0 >virtual/perl-libnet-3.140.0:0 ssl >virtual/perl-MIME-Base64-3.160.0-r1:0 >virtual/perl-Module-Metadata-1.0.37-r2:0 >virtual/perl-parent-0.238.0-r2:0 >virtual/perl-Parse-CPAN-Meta-2.150.10-r6:0 >virtual/perl-Perl-OSType-1.10.0-r6:0 >virtual/perl-podlators-4.140.0-r3:0 >virtual/perl-Scalar-List-Utils-1.620.0:0 >virtual/perl-Test-Harness-3.440.0:0 >virtual/perl-Text-ParseWords-3.310.0:0 >virtual/perl-Time-Local-1.300.0-r1:0 >virtual/perl-version-0.992.900:0 >virtual/perl-XSLoader-0.310.0:0 >virtual/pkgconfig-2-r1:0 >virtual/rust-1.62.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -rustfmt >virtual/service-manager-1:0 >virtual/ssh-0-r1:0 -minimal >virtual/tmpfiles-0-r3:0 >virtual/ttf-fonts-1-r1:0 >virtual/udev-217-r5:0 >virtual/w3m-1:0 >virtual/yacc-0:0 >www-client/pybugz-0.13-r2:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >www-client/w3m-0.5.3_p20220429:0 -X -fbcon -gdk-pixbuf -gpm -imlib l10n_ja -lynxkeymap nls -nntp ssl unicode -xface >x11-apps/xprop-1.2.5:0 >x11-apps/xset-1.2.4-r1:0 >x11-base/xcb-proto-1.15.2:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >x11-base/xorg-proto-2022.1:0 -test >x11-libs/cairo-1.16.0-r5:0 X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug -gles2-only glib -opengl -static-libs svg -utils -valgrind >x11-libs/gdk-pixbuf-2.42.8:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -gtk-doc introspection jpeg -tiff >x11-libs/libdrm-2.4.112:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -valgrind video_cards_amdgpu -video_cards_exynos -video_cards_freedreno video_cards_intel video_cards_nouveau -video_cards_omap video_cards_radeon -video_cards_tegra -video_cards_vc4 -video_cards_vivante -video_cards_vmware >x11-libs/libICE-1.0.10-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 ipv6 >x11-libs/libpciaccess-0.16-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 zlib >x11-libs/libSM-1.2.3-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc ipv6 uuid >x11-libs/libX11-1.8.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/libXau-1.0.9-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libxcb-1.15-r1:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb >x11-libs/libXdmcp-1.1.3-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXext-1.3.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXfixes-6.0.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXft-2.3.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXi-1.8:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libxkbcommon-1.4.1:0 X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs -test -test -tools -wayland >x11-libs/libXmu-1.1.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc ipv6 >x11-libs/libXrandr-1.5.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXrender-0.9.10-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/libxshmfence-1.3-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/libXt-1.2.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/libXxf86vm-1.1.4-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/pango-1.50.8:0 X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug introspection -sysprof -test >x11-libs/pixman-0.40.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test >x11-libs/xcb-util-0.4.0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/xcb-util-cursor-0.1.3-r4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/xcb-util-image-0.4.0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/xcb-util-keysyms-0.4.0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/xcb-util-renderutil-0.3.9-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/xcb-util-wm-0.4.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >x11-libs/xtrans-1.4.0:0 -doc >x11-misc/compose-tables-1.8.1:0 >x11-misc/shared-mime-info-2.2:0 -test >x11-misc/util-macros-1.19.3:0 >x11-misc/xdg-utils-1.1.3_p20210805:0 -dbus -doc -gnome > > >####################### ># build.log # >####################### >>>> Unpacking source... >>>> Unpacking pymol-1.8.4.0.png.xz to /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work >>>> Unpacking pymol-2.5.0.tar.gz to /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work >>>> Source unpacked in /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work >>>> Preparing source in /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0 ... > * Non-PEP517 builds are deprecated for ebuilds using plain distutils. > * Please migrate to DISTUTILS_USE_PEP517=setuptools. > * Please see Python Guide for more details: > * https://projects.gentoo.org/python/guide/distutils.html >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0 ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0 ... > * python3_8: running distutils-r1_run_phase distutils-r1_python_compile >python3.8 setup.py build -j 16 >fatal: not a git repository (or any parent up to mount point /var/tmp) >Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). >running build >running build_py >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol2 >copying modules/pymol2/cmd2.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol2 >copying modules/pymol2/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol2 >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/xwin.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/xray.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/wizarding.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/viewing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/vfont.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/util.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/shortcut_manager.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/shortcut_dict.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/shortcut.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/setting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/seqalign.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/selector.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/selecting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/save_shortcut.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/rpc.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/querying.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/pymolhttpd.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/preset.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/povray.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/parsing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/parser.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/mpeg_encode.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/moving.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/movie.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/morphing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/monitoring.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/menu.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/locking.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/lazyio.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/keywords.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/keyboard.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/invocation.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/internal.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/importing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/helping.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/headering.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/fitting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/feedingback.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/externing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/exporting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/experimenting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/editor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/editing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/diagnosing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/creating.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/controlling.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/constants_palette.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/constants.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/computing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/completing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/commanding.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/colorramping.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/colorprinting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/cmd.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/checking.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/cgo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/callback.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/api.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/__main__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >copying modules/pymol/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/toggle.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/stereodemo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/security.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/sculpting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/renaming.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/pseudoatom.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/pair_fit.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/openvr.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/nucmutagenesis.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/mutagenesis.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/message.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/measurement.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/label.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/filter.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/dragging.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/distance.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/density.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/demo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/command.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/cleanup.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/charge.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/box.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/benchmark.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/appearance.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/annotation.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >copying modules/pymol/wizard/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/stereochemistry >copying modules/pymol/stereochemistry/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/stereochemistry >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins >copying modules/pymol/plugins/repository.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins >copying modules/pymol/plugins/managergui_qt.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins >copying modules/pymol/plugins/managergui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins >copying modules/pymol/plugins/legacysupport.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins >copying modules/pymol/plugins/installation.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins >copying modules/pymol/plugins/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/Qt >copying modules/pymol/Qt/utils.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/Qt >copying modules/pymol/Qt/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/Qt >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk >copying modules/pmg_tk/volume.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk >copying modules/pmg_tk/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk >copying modules/pmg_tk/TextEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk >copying modules/pmg_tk/Setting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk >copying modules/pmg_tk/SetEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk >copying modules/pmg_tk/PyMOLMapLoad.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk >copying modules/pmg_tk/PMGApp.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk >copying modules/pmg_tk/Demo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk >copying modules/pmg_tk/ColorEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/startup >copying modules/pmg_tk/startup/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/startup >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins >copying modules/pmg_tk/skins/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal >copying modules/pmg_tk/skins/normal/builder.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal >copying modules/pmg_tk/skins/normal/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal >copying modules/pmg_tk/skins/normal/ModalWindow.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/demo >copying modules/pmg_tk/skins/demo/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/demo >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/volume.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/shortcut_menu_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/pymol_qt_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/pymol_gl_widget.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/properties_dialog.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/mimic_tk.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/mimic_pmg_tk.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/keymapping.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/file_dialogs.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/builder.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/advanced_settings_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >copying modules/pmg_qt/TextEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax >copying modules/pmg_qt/syntax/python.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax >copying modules/pmg_qt/syntax/pmlparser.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax >copying modules/pmg_qt/syntax/pml.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax >copying modules/pmg_qt/syntax/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/xyz.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/water_residues.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/water_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/solvate.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/sdf.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/protein_residues.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/protein_mmff.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/protein_amber99.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/protein_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/protein.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/place.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/pkl.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/pdb.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/neighbor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/mol2.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/mol.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/models.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/mmd.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/mass.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/map.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/mae.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/lst.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/io.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/hetatm.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/gms.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/gamess1.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/dictdb.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/cpv.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/cif.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/charge.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/cc1.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/brick.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/bonds.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/bond_mmff.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/bond_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/arc.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >copying modules/chempy/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker >copying modules/chempy/tinker/state.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker >copying modules/chempy/tinker/realtime.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker >copying modules/chempy/tinker/keyword.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker >copying modules/chempy/tinker/amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker >copying modules/chempy/tinker/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mmtf >copying modules/chempy/mmtf/io.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mmtf >copying modules/chempy/mmtf/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mmtf >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fragments >copying modules/chempy/fragments/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fragments >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fast >copying modules/chempy/fast/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fast >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ >copying modules/chempy/champ/formal_charges.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ >copying modules/chempy/champ/assign.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ >copying modules/chempy/champ/amber99.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ >copying modules/chempy/champ/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin >copying modules/chempy/bmin/util.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin >copying modules/chempy/bmin/state.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin >copying modules/chempy/bmin/realtime.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin >copying modules/chempy/bmin/commands.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin >copying modules/chempy/bmin/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin >copying modules/pmg_qt/forms/shortcut_menu.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/save_object.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/save_molecule.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/render.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/props.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/png.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/pluginmanager.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/pluginitem.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/movieexport.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/load_traj.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/load_mtz.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/load_map.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/load_mae.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/load_aln.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/help_shortcut.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/fetch.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/create_shortcut.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/colors.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/change_confirm.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >copying modules/pmg_qt/forms/askpartial.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms >warning: build_py_pymol: byte-compiling is disabled, skipping. > >running build_ext >building 'pymol._cmd' extension >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8 >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/build >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/build/generated >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/mmtf-c >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0 >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1 >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2 >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3 >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4 >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5 >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov >creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD build/generated/ShaderText.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/mmtf-c/mmtf_parser.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/mmtf-c/mmtf_parser.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function âread_dlpoly_config_timestepâ: >contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 669 | fgets(fbuffer, 1024, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function âread_dlpoly_timestepâ: >contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 554 | fgets(fbuffer, 1024, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function âint getUniqueResID(char*, int)â: >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable âiâ [-Wunused-variable] > 443 | int i, uid; > | ^ >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function âint parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)â: >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable âjâ [-Wunused-variable] > 484 | int i, count, atomdata, pos, idx, xyzcount, j; > | ^ >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable âoldChainâ [-Wunused-variable] > 503 | char oldChain[8]; > | ^~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function âbool readAngleBonds(molfile_atom_t*, pdbxParser*)â: >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable âbondTableâ [-Wunused-variable] > 803 | int bondTable[32]; > | ^~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable âjâ [-Wunused-variable] > 807 | int i, pos, j, k; > | ^ >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable âmodelNumâ [-Wunused-variable] > 811 | char modelNum[8]; > | ^~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable âatomâ [-Wunused-variable] > 822 | molfile_atom_t * atom; > | ^~~~ >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable âtestâ [-Wunused-variable] > 884 | int test = parser->nbonds + bnum; > | ^~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function âbool readRMSDBonds(molfile_atom_t*, pdbxParser*)â: >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable âbondTableâ [-Wunused-variable] > 984 | int bondTable[32]; > | ^~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable âjâ [-Wunused-variable] > 988 | int i, pos, j, k; > | ^ >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable âmodelNumâ [-Wunused-variable] > 991 | char modelNum[8]; > | ^~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable âatomâ [-Wunused-variable] > 1002 | molfile_atom_t * atom; > | ^~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function âint read_parm7_structure(void*, int*, molfile_atom_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 78 | fgets(buf, 85, file); > | ~~~~~^~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function âvoid* open_file_write(const char*, const char*, int)â: >contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable âfdâ [-Wunused-variable] > 1409 | FILE* fd; > | ^~ >In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function âint parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)â: >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 204 | fgets(buf, 85, file); > | ~~~~~^~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function âint parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)â: >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 257 | fgets(buf, 85, file); > | ~~~~~^~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function âint parse_parm7_resnames(const char*, int, char*, FILE*)â: >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 275 | fgets(buf, 85, file); > | ~~~~~^~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function âint parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)â: >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 289 | fscanf(file, " %d", &cur); > | ~~~~~~^~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function âread_vaspparchg_dataâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 238 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function âread_vaspparchg_metadataâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 150 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function âparmstruct* read_parm7_header(FILE*)â: >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 368 | fgets(sdum, 512, file); > | ~~~~~^~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 371 | fscanf(file, "%s\n", sdum); // "%FLAG" > | ~~~~~~^~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE" > | ~~~~~~^~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)" > | ~~~~~~^~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 399 | fgets(prm->title, sizeof(prm->title), file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 427 | fgets(sdum, sizeof(sdum), file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 439 | fscanf(file,parm7, > | ~~~~~~^~~~~~~~~~~~ > 440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona, > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia, > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 442 | &prm->Jparm, &prm->Nparm); > | ~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 443 | fscanf(file, parm7, > | ~~~~~~^~~~~~~~~~~~~ > 444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta, > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra, > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 446 | &prm->Natyp, &prm->Nphb); > | ~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper, > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap); > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 451 | fscanf(file,"%8d",&prm->Numextra); //BB > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function âopen_vaspparchg_readâ: >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function âint read_parm7_flag(FILE*, const char*, const char*)â: >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 79 | fscanf(file, "%s\n", buf); > | ~~~~~~^~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 87 | fscanf(file, "%s\n", buf); > | ~~~~~~^~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 71 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 97 | fscanf(file, "%s\n", buf); > | ~~~~~~^~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 75 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 81 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 92 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 103 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function âint read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)â: >contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 278 | fgets(line, LINESIZE, mdf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 297 | fgets(line, LINESIZE, mdf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 319 | fgets(line, LINESIZE, mdf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 357 | fgets(line, LINESIZE, mdf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function âint read_mdf_structure(void*, int*, molfile_atom_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 223 | fgets(line, LINESIZE, mdf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 241 | fgets(line, LINESIZE, mdf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function âvoid* open_mdf_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 164 | fgets(line, LINESIZE, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 176 | fgets(line, LINESIZE, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 183 | fgets(line, LINESIZE, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function âvoid* open_uhbd_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 102 | fread(&headersize, sizeof(int), 1, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function âopen_namdbin_readâ: >contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 78 | fread(&filen, sizeof(namdbin_int32), 1, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function âint read_edm_data(void*, int, float*, float*)â: >contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 240 | fgets(readbuf, 13, edm->fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function âvoid eatline(FILE*)â: >contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 44 | fgets(readbuf, 1024, fd); // go on to next line > | ~~~~~^~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function âread_vaspposcar_timestepâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 232 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 237 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 246 | for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 249 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 256 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function âread_vaspposcar_structureâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 195 | for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 198 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 203 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function âopen_vaspposcar_readâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 69 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 73 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 87 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function âread_vasp5xdatcar_timestepâ: >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 224 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function âread_vasp5xdatcar_structureâ: >contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 174 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 180 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 189 | for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 194 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 204 | for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function âopen_vasp5xdatcar_readâ: >contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 69 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 72 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 77 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function âint read_dsn6_data(void*, int, float*, float*)â: >contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 233 | fread(brick, sizeof(char), 512, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function âvoid* open_dsn6_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 91 | fread(fileHeader, sizeof(short), 19, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function âint read_mol2_timestep(void*, int, molfile_timestep_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 275 | fgets(line, LINESIZE, mol2->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 289 | fgets(line, LINESIZE, mol2->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function âint read_mol2_bonds_aux(void*, int*, int**, int**, float**)â: >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 199 | fgets(line, LINESIZE, mol2->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 209 | fgets(line, LINESIZE, mol2->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function âint read_mol2(void*, int*, molfile_atom_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 127 | fgets(line, LINESIZE, mol2->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 138 | fgets(line, LINESIZE, mol2->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function âvoid* open_mol2_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 74 | fgets(line, LINESIZE, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name > | ~~~~~^~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 82 | fgets(line, LINESIZE, fd); // Read the molecule info > | ~~~~~^~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type > | ~~~~~^~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 92 | fgets(line, LINESIZE, fd); // Read the charge_type > | ~~~~~^~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function âint {anonymous}::ReadPARM::readparm(FILE*)â: >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 435 | fscanf(file, " " DBLFMT, &prm->Charges[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 444 | fscanf(file, " " DBLFMT, &prm->Masses[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 510 | fscanf(file, " " DBLFMT, &prm->Rk[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 517 | fscanf(file, " " DBLFMT, &prm->Req[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 524 | fscanf(file, " " DBLFMT, &prm->Tk[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 531 | fscanf(file, " " DBLFMT, &prm->Teq[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 538 | fscanf(file, " " DBLFMT, &prm->Pk[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 545 | fscanf(file, " " DBLFMT, &prm->Pn[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 552 | fscanf(file, " " DBLFMT, &prm->Phase[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 559 | fscanf(file, " " DBLFMT, &prm->Solty[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 756 | fscanf(file, " " DBLFMT, &prm->HB12[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 763 | fscanf(file, " " DBLFMT, &prm->HB6[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 771 | fscanf(file, " " DBLFMT, &H[i]); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]); > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 868 | &prm->Natcap, &prm->Cutcap, > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 869 | &prm->Xcap, &prm->Ycap, &prm->Zcap); > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function âvoid* open_grid_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 84 | fread(&dataBegin, sizeof(int), 1, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function âvoid* open_cube_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 175 | fgets(readbuf, 1023, cube->fd); // go on to next line > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 181 | fgets(readbuf, 1023, cube->fd); // skip second header line > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 326 | fgets(readbuf, 1023, cube->fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 337 | fgets(readbuf, 1023, cube->fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 339 | fscanf(cube->fd, "%d", &cube->nsets); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 344 | fscanf(cube->fd, "%d", &orb); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function âread_vaspxdatcar_timestepâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 283 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function âread_vaspxdatcar_structureâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 228 | for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 233 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 237 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 252 | for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function âopen_vaspxdatcar_readâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 89 | fgets(lineptr, LINESIZE, poscar); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 92 | fgets(lineptr, LINESIZE, poscar); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 97 | fgets(lineptr, LINESIZE, poscar); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 111 | fgets(lineptr, LINESIZE, poscar); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 121 | fgets(lineptr, LINESIZE, poscar); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function âint read_brix_data(void*, int, float*, float*)â: >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 247 | fread(brick, sizeof(char), 512, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function âvoid* open_brix_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 79 | fscanf(fd, "%3s", keyWord); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord, > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); > | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 123 | fscanf(fd, " %s %f", keyWord, &prod); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 128 | fscanf(fd, " %s %f", keyWord, &plus); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 135 | fscanf(fd, " %s %f", keyWord, &sigma); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function âint read_bgf_timestep(void*, int, molfile_timestep_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 243 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 252 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function âint read_bgf_bonds_aux(void*, int*, int**, int**, float**)â: >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 328 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 346 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 355 | fgets(nextline, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 419 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function âint read_bgf_structure(void*, int*, molfile_atom_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 194 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 203 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function âvoid* open_bgf_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 59 | fgets(line, LINESIZE, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function âread_vaspchgcar_dataâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 237 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 282 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function âread_vaspchgcar_metadataâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 150 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function âopen_vaspchgcar_readâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 71 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 75 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 81 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 92 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 103 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function âvoid* open_fs4_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 79 | fread(&dataBegin, sizeof(int), 1, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function âint read_spider_data(void*, int, float*, float*)â: >contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 286 | fread(datablock, total * sizeof(float), 1, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function âcount_orbitalsâ: >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of âfscanfâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 1165 | fscanf(data->file, " Ene= %f\n", &orbenergy); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of âfscanfâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 1166 | fscanf(data->file, " Spin= %s\n", spin); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of âfscanfâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 1167 | fscanf(data->file, " Occup= %f\n", &occu); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: >contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function âeatlineâ: >contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 840 | fgets(readbuf, 1024, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function âread_car_timestepâ: >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 326 | fgets(line, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 339 | fgets(line, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 344 | fgets(line, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 349 | fgets(line, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 363 | fgets(line, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 373 | fgets(line, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function âread_car_structureâ: >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 266 | fgets(line, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 268 | fgets(line, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 272 | fgets(line, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 295 | fgets(line, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 305 | fgets(line, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function âopen_car_readâ: >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 169 | fgets(line, LINESIZE, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 179 | fgets(line, LINESIZE, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 182 | fgets(line, LINESIZE, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 210 | fgets(line, LINESIZE, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 213 | fgets(line, LINESIZE, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 224 | fgets(line, LINESIZE, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 226 | fgets(line, LINESIZE, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 230 | fgets(line, LINESIZE, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 234 | fgets(line, LINESIZE, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 245 | fgets(line, LINESIZE, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function âopen_molden_readâ: >contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of âfscanfâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 224 | fscanf(data->file, "%d", &natm); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function âopen_binpos_readâ: >contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 64 | fread(magicchar,sizeof(char),4,fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 72 | fread(&igarb,sizeof(int),1,fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function âread_vaspxml_structureâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 139 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 144 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function âopen_vaspxml_readâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 86 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 92 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function âread_vaspoutcar_timestepâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 239 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 242 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function âread_vaspoutcar_structureâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 204 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function âopen_vaspoutcar_readâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 87 | fgets(lineptr, LINESIZE, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function âopen_rst_readâ: >contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 67 | fgets(title, 82, fd); > | ^~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 70 | fgets(line, 82, fd); > | ^~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Crystal.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: >contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function âeatlineâ: >contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of âfgetsâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 840 | fgets(readbuf, 1024, fd); > | ^~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Field.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: >contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function âint mdio_readline(md_file*, char*, int, int)â: >contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 426 | fgets(buf, n, mf->f); > | ~~~~~^~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Isosurf.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function âvoid* open_plt_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 69 | fread(intHeader, sizeof(int), 5, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 82 | fread(floatHeader, sizeof(float), 6, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/MemoryDebug.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function âint read_rawgraphics(void*, int*, const molfile_graphics_t**)â: >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 96 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 104 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 119 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 131 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 153 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 162 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 171 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Block.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function âvoid* open_ccp4_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 304 | fgets(symData, 81, fd); > | ~~~~~^~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function âint read_rawgraphics(void*, int*, const molfile_graphics_t**)â: >contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 91 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 116 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 132 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 149 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 155 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 161 | fgets(line, 80, infile); //one more read to keep us in sync > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 170 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 217 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 237 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 256 | fgets(line, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Pixmap.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Sphere.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function âvoid put_element_ply(PlyFile*, void*)â: >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable âiâ [-Wunused-variable] > 459 | int i,j,k; > | ^ >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function âvoid ascii_get_element(PlyFile*, char*)â: >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable âiâ [-Wunused-variable] > 1407 | int i,j,k; > | ^ >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function âvoid binary_get_element(PlyFile*, char*)â: >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable âiâ [-Wunused-variable] > 1541 | int i,j,k; > | ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Triangle.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Word.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 1629 | fread (&len, sizeof(int), 1, fp); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 1631 | fread (str, len, 1, fp); > | ~~~~~~^~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function âvoid get_binary_item(FILE*, int, int*, unsigned int*, double*)â: >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 2057 | fread (ptr, 1, 1, fp); > | ~~~~~~^~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 2063 | fread (ptr, 1, 1, fp); > | ~~~~~~^~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 2069 | fread (ptr, 2, 1, fp); > | ~~~~~~^~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 2075 | fread (ptr, 2, 1, fp); > | ~~~~~~^~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 2081 | fread (ptr, 4, 1, fp); > | ~~~~~~^~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 2087 | fread (ptr, 4, 1, fp); > | ~~~~~~^~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 2093 | fread (ptr, 4, 1, fp); > | ~~~~~~^~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 2099 | fread (ptr, 8, 1, fp); > | ~~~~~~^~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Basis.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function âint read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function âint read_vtk_data(void*, int, float*, float*)â: >contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); > | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/MemoryUsage.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function âint read_xbgf_timestep(void*, int, molfile_timestep_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 288 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 297 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Character.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function âint read_xbgf_bonds_aux(void*, int*, int**, int**, float**)â: >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 365 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 387 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 395 | fgets(nextline, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 455 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function âint read_xbgf_structure(void*, int*, molfile_atom_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 241 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 250 | fgets(line, LINESIZE, bgf->file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function âvoid* open_xbgf_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 72 | fgets(line, LINESIZE, fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function âvoid line3(FILE*, GRASSP*)â: >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 186 | fread(line3, 1, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function âint read_rawgraphics(void*, int*, const molfile_graphics_t**)â: >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro âTRASHâ > 284 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 285 | fread(line, 1, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro âTRASHâ > 291 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro âTRASHâ > 305 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 306 | fread(line, 1, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro âTRASHâ > 307 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro âTRASHâ > 311 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro âTRASHâ > 313 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro âTRASHâ > 318 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 319 | fread(line, 1, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro âTRASHâ > 320 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro âTRASHâ > 328 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 329 | fread(line, 1, 80, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro âTRASHâ > 330 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro âTRASHâ > 354 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 355 | fread(vertex, 3 * sizeof(float), nvert, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro âTRASHâ > 356 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro âTRASHâ > 357 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 358 | fread(access, 3 * sizeof(float), nvert, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro âTRASHâ > 359 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro âTRASHâ > 360 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 361 | fread(normal, 3 * sizeof(float), nvert, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro âTRASHâ > 362 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro âTRASHâ > 371 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 372 | fread(triangle, 3 * sizeof(int), ntriangles, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro âTRASHâ > 373 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro âTRASHâ > 374 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 375 | fread(properties, 3 * sizeof(float), nvert, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro âTRASHâ > 394 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 395 | fread(striangle, sizeof(short), 3 * ntriangles, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro âTRASHâ > 396 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 280 | #define TRASH fread(trash, 4, 1, infile) > | ~~~~~^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro âTRASHâ > 397 | TRASH; > | ^~~~~ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 398 | fread(properties, sizeof(float), 3 * nvert, infile); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Font.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/PostProcess.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function âvoid eatline(FILE*)â: >contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 238 | fgets(readbuf, 1024, fd); // go on to next line > | ~~~~~^~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function âvoid* open_xsf_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 408 | fgets(readbuf, 256, xsf->fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 442 | fgets(readbuf, 256, xsf->fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 444 | fgets(readbuf, 256, xsf->fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 446 | fgets(readbuf, 256, xsf->fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 448 | fgets(readbuf, 256, xsf->fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 450 | fgets(readbuf, 256, xsf->fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 473 | fgets(readbuf, 256, xsf->fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 508 | fgets(readbuf, 256, xsf->fd); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function âint {anonymous}::write_structure(void*, int, const molfile_atom_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable âlast_ctnumberâ [-Wunused-variable] > 1904 | int last_ctnumber = -1; > | ^~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUTHel10.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >layer0/MemoryUsage.cpp: In function âsize_t pymol::memory_usage()â: >layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=] > 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); > | ^~~~~~~~~ >layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 38 | std::fscanf(fp, "%*zu%zu", &vmRSS); > | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/MyPNG.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Tetsurf.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUT.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/mmtf-c/mmtf_parser.cpp: In function âbool MMTF_unpack_from_file(const char*, MMTF_container*)â: >contrib/mmtf-c/mmtf_parser.cpp:1071:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â declared with attribute âwarn_unused_resultâ [-Wunused-result] > 1071 | fread(buffer, fileLen, 1, file); > | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/ccealignmodule.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/ButMode.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUTHel12.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Util.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/CarveHelper.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/File.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Map.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/ShaderMgr.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function âDEN_read_volumetric_dataâ: >contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 970 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 971 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function âPOT_read_volumetric_dataâ: >contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 1113 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 1114 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Deferred.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function âabinit_headerâ: >contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of âfreadâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 1511 | fread(skip, 1, 8, fp); > | ^~~~~~~~~~~~~~~~~~~~~ >contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function âGEO_read_next_timestepâ: >contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of âfscanfâ declared with attribute âwarn_unused_resultâ [-Wunused-result] > 619 | fscanf(data->file, "%*s %f %f %f", &x, &y, &z); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Movie.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUTHel18.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Color.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Picking.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Err.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/ContourSurf.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/GenericBuffer.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Pop.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Parse.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Util2.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Rep.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontType.cpp -o 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/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SceneMouse.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectMolecule.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/COLLADA.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >layer1/Wizard.cpp: In member function âvirtual int CWizard::release(int, int, int, int)â: >layer1/Wizard.cpp:571:18: warning: unused variable âwizâ [-Wunused-variable] > 571 | if (auto wiz = WizardGet(G)) { > | ^~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectSlice.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include 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/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/SpecRecSpecial.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4/Cmd.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4/Menu.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4/PopUp.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5/PyMOL.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5/TestPyMOL.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5/main.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVContext.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVHeap.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVHeapArray.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVLexicon.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVOneToAny.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVOneToOne.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVRandom.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/ov_utility.o -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/_cmd.cpython-38-x86_64-linux-gnu.so -fopenmp >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:62:16: error: type âstruct parmâ violates the C++ One Definition Rule [-Werror=odr] > 62 | typedef struct parm { > | ^ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:59:16: note: a different type is defined in another translation unit > 59 | typedef struct parm { > | ^ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:63:8: note: the first difference of corresponding definitions is field âtitleâ > 63 | char title[85]; > | ^ >contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:60:17: note: a field with different name is defined in another translation unit > 60 | char ititl[81]; > | ^ >contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:33:3: error: type âstruct parmdataâ violates the C++ One Definition Rule [-Werror=odr] > 33 | } parmdata; > | ^ >contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:32:3: note: a different type is defined in another translation unit > 32 | } parmdata; > | ^ >contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:28:15: note: the first difference of corresponding definitions is field âprmâ > 28 | parmstruct *prm; > | ^ >contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:28:13: note: a field with different name is defined in another translation unit > 28 | ReadPARM *rp; > | ^ >layer0/Isosurf.cpp:47:16: error: type âstruct PointTypeâ violates the C++ One Definition Rule [-Werror=odr] > 47 | typedef struct PointType { > | ^ >layer0/Tetsurf.cpp:46:3: note: a different type is defined in another translation unit > 46 | } PointType; > | ^ >layer0/Isosurf.cpp:49:7: note: the first difference of corresponding definitions is field âNLinkâ > 49 | int NLink; > | ^ >layer0/Tetsurf.cpp:43:9: note: a field with different name is defined in another translation unit > 43 | float Normal[3]; > | ^ >ov/src/OVOneToAny.cpp:15:3: error: type âstruct up_elementâ violates the C++ One Definition Rule [-Werror=odr] > 15 | } up_element; > | ^ >ov/src/OVOneToOne.cpp:15:3: note: a different type is defined in another translation unit > 15 | } up_element; > | ^ >ov/src/OVOneToOne.cpp:14:25: note: the first difference of corresponding definitions is field âreverse_nextâ > 14 | ov_size forward_next, reverse_next; > | ^ >ov/src/OVOneToOne.cpp:15:3: note: a type with different number of fields is defined in another translation unit > 15 | } up_element; > | ^ >lto1: some warnings being treated as errors >lto-wrapper: fatal error: x86_64-pc-linux-gnu-g++ returned 1 exit status >compilation terminated. >/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: error: lto-wrapper failed >collect2: error: ld returned 1 exit status >error: command 'x86_64-pc-linux-gnu-g++' failed with exit status 1 > * ERROR: sci-chemistry/pymol-2.5.0-r1::gentoo failed (compile phase): > * (no error message) > * > * Call stack: > * ebuild.sh, line 122: Called src_compile > * environment, line 4364: Called distutils-r1_src_compile > * environment, line 2035: Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile' > * environment, line 776: Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile' > * environment, line 3948: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' > * environment, line 3446: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' > * environment, line 3444: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile' > * environment, line 1225: Called distutils-r1_run_phase 'distutils-r1_python_compile' > * environment, line 2017: Called distutils-r1_python_compile > * environment, line 1819: Called esetup.py 'build' '-j' '16' > * environment, line 2620: Called die > * The specific snippet of code: > * "${@}" || die -n; > * > * If you need support, post the output of `emerge --info '=sci-chemistry/pymol-2.5.0-r1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-chemistry/pymol-2.5.0-r1::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-chemistry/pymol-2.5.0-r1:20220730-200538.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0' > * S: '/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0' >
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bug 862441
: 795967