* Package:    sci-chemistry/pymol-2.5.0-r1
 * Repository: gentoo
 * Maintainer: sci-chemistry@gentoo.org
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux netcdf python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox


@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@
This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix;
This ebuild was merged at the following commit:
https://github.com/gentoo-mirror/gentoo/commit/4f0dedccd0fd2a6475f311861f0367b22111c1c0  (Sat Jul 30 20:01:47 UTC 2022)
@@@@@ END @@@@@



##################
# emerge --info: #
##################
Portage 3.0.34 (python 3.10.5-final-0, default/linux/amd64/17.1, gcc-12.1.1, glibc-2.35-r8, 5.10.133-gentoo x86_64)
=================================================================
System uname: Linux-5.10.133-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-glibc2.35
KiB Mem:   264024340 total, 232241392 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sat, 30 Jul 2022 20:01:47 +0000
sh bash 5.1_p16
ld GNU ld (Gentoo 2.38 p4) 2.38
app-misc/pax-utils:        1.3.4::gentoo
app-shells/bash:           5.1_p16::gentoo
dev-lang/perl:             5.36.0::gentoo
dev-lang/python:           3.8.13_p2::gentoo, 3.9.13::gentoo, 3.10.5::gentoo, 3.11.0_beta5::gentoo
dev-lang/rust:             1.62.1::gentoo
dev-util/cmake:            3.23.3::gentoo
dev-util/meson:            0.63.0::gentoo
sys-apps/baselayout:       2.8-r2::gentoo
sys-apps/openrc:           0.45.2::gentoo
sys-apps/sandbox:          2.29::gentoo
sys-devel/autoconf:        2.71-r1::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.38-r2::gentoo
sys-devel/binutils-config: 5.4.1::gentoo
sys-devel/gcc:             12.1.1_p20220625::gentoo
sys-devel/gcc-config:      2.5-r1::gentoo
sys-devel/libtool:         2.4.7::gentoo
sys-devel/llvm:            14.0.6-r2::gentoo
sys-devel/make:            4.3::gentoo
sys-kernel/linux-headers:  5.18-r1::gentoo (virtual/os-headers)
sys-libs/glibc:            2.35-r8::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts: 
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-max-age: 24

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* BSD BitstreamVera HPND OFL UoI-NCSA freedist public-domain"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing"
DISTDIR="/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/distdir"
EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing"
GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0"
MAKEOPTS="-j16"
PKGDIR="/root/tbci/binpkg"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="acl amd64 bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses netcdf nls nptl openmp pam pcre readline seccomp split-usr ssl unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" PYTHON_TARGETS="python3_8 python3_9 python3_10" USERLAND="GNU"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS





##############################
# emerge history (qlop -mv): #
##############################
2022-07-30T21:51:17 >>> sys-devel/llvm-common-14.0.6
2022-07-30T21:51:18 >>> sys-apps/hwdata-0.361
2022-07-30T21:51:20 >>> x11-misc/util-macros-1.19.3
2022-07-30T21:51:23 >>> dev-libs/vala-common-0.56.2
2022-07-30T21:51:09 >>> sys-libs/ncurses-6.3_p20220423-r1
2022-07-30T21:51:12 >>> app-arch/bzip2-1.0.8-r1
2022-07-30T21:51:13 >>> dev-libs/libffi-3.4.2-r2
2022-07-30T21:51:15 >>> app-crypt/libmd-1.0.4
2022-07-30T21:51:21 >>> app-arch/zstd-1.5.2-r1
2022-07-30T21:52:27 >>> sys-libs/zlib-1.2.12-r2
2022-07-30T21:52:36 >>> dev-libs/expat-2.4.8
2022-07-30T21:52:46 >>> dev-libs/libbsd-0.11.6
2022-07-30T21:52:56 >>> sys-libs/mtdev-1.1.6
2022-07-30T21:52:58 >>> x11-libs/libXau-1.0.9-r1
2022-07-30T21:53:12 >>> x11-libs/libXdmcp-1.1.3-r1
2022-07-30T21:53:22 >>> x11-libs/libxcb-1.15-r1
2022-07-30T21:53:33 >>> x11-libs/libX11-1.8.1
2022-07-30T21:53:43 >>> x11-libs/libXext-1.3.4
2022-07-30T21:53:52 >>> x11-libs/libXrender-0.9.10-r2
2022-07-30T21:54:00 >>> app-eselect/eselect-blas-0.2
2022-07-30T21:54:02 >>> app-eselect/eselect-lapack-0.2
2022-07-30T21:54:04 >>> virtual/fortran-0-r1
2022-07-30T21:54:05 >>> dev-libs/elfutils-0.187
2022-07-30T21:54:30 >>> virtual/libelf-3-r1
2022-07-30T21:54:40 >>> x11-libs/xcb-util-renderutil-0.3.9-r3
2022-07-30T21:54:42 >>> dev-util/wayland-scanner-1.21.0
2022-07-30T21:54:44 >>> dev-libs/msgpack-3.3.0
2022-07-30T21:54:45 >>> x11-libs/libXfixes-6.0.0
2022-07-30T21:54:47 >>> media-libs/libjpeg-turbo-2.1.3
2022-07-30T21:54:48 >>> media-libs/libglvnd-1.4.0
2022-07-30T21:54:50 >>> x11-libs/xcb-util-keysyms-0.4.0-r2
2022-07-30T21:54:53 >>> x11-libs/libXrandr-1.5.2
2022-07-30T21:54:52 >>> x11-libs/xcb-util-wm-0.4.1-r3
2022-07-30T21:54:55 >>> x11-libs/libXxf86vm-1.1.4-r2
2022-07-30T21:54:56 >>> sci-libs/lapack-3.10.1
2022-07-30T21:54:58 >>> media-libs/glm-0.9.9.8-r1
2022-07-30T21:55:00 >>> media-gfx/imagemagick-7.1.0.44
2022-07-30T21:55:01 >>> sci-libs/hdf5-1.12.2-r4
2022-07-30T21:55:03 >>> dev-libs/libevdev-1.12.1
2022-07-30T21:55:05 >>> dev-libs/double-conversion-3.2.0
2022-07-30T21:55:08 >>> x11-libs/libxshmfence-1.3-r2
2022-07-30T21:55:06 >>> dev-libs/icu-71.1-r1
2022-07-30T21:55:11 >>> dev-libs/fribidi-1.0.12
2022-07-30T21:55:13 >>> app-eselect/eselect-rust-20210703
2022-07-30T21:55:16 >>> dev-lang/nasm-2.15.05
2022-07-30T21:55:10 >>> x11-libs/libpciaccess-0.16-r1
2022-07-30T21:55:15 >>> sys-apps/lsb-release-3.2
2022-07-30T21:55:18 >>> sys-devel/llvm-14.0.6-r2
2022-07-30T21:55:20 >>> dev-lang/python-3.10.5
2022-07-30T21:57:55 >>> x11-libs/libXi-1.8
2022-07-30T21:57:58 >>> virtual/jpeg-100-r1
2022-07-30T21:58:04 >>> virtual/cblas-3.8
2022-07-30T21:58:09 >>> media-video/mpeg-tools-1.5b-r5
2022-07-30T21:58:15 >>> virtual/lapack-3.10
2022-07-30T21:58:20 >>> dev-libs/mmtf-cpp-1.0.0-r1
2022-07-30T21:58:25 >>> dev-libs/wayland-1.21.0
2022-07-30T21:58:31 >>> dev-libs/wayland-protocols-1.26
2022-07-30T21:58:36 >>> x11-libs/libdrm-2.4.112
2022-07-30T21:58:41 >>> dev-lang/rust-1.62.1
2022-07-30T21:58:47 >>> dev-qt/qtcore-5.15.5-r2
2022-07-30T21:58:56 >>> virtual/rust-1.62.1
2022-07-30T21:59:03 >>> dev-qt/qtxml-5.15.5
2022-07-30T21:59:08 >>> dev-libs/libinput-1.21.0-r1
2022-07-30T21:59:14 >>> dev-qt/qtdbus-5.15.5-r1
2022-07-30T21:59:20 >>> sys-devel/llvmgold-14
2022-07-30T21:59:25 >>> x11-libs/xcb-util-0.4.0-r2
2022-07-30T21:59:31 >>> media-libs/mesa-22.1.3
2022-07-30T21:59:36 >>> x11-libs/xcb-util-image-0.4.0-r2
2022-07-30T21:59:43 >>> virtual/opengl-7.0-r2
2022-07-30T21:59:49 >>> x11-libs/xcb-util-cursor-0.1.3-r4
2022-07-30T21:59:54 >>> media-libs/glu-9.0.2
2022-07-30T21:59:59 >>> dev-lang/tk-8.6.12
2022-07-30T22:00:10 >>> virtual/glu-9.0-r2
2022-07-30T22:00:13 >>> dev-tcltk/blt-2.5.3-r1
2022-07-30T22:00:23 >>> media-libs/glew-2.2.0
2022-07-30T22:00:27 >>> media-libs/freeglut-3.2.2
2022-07-30T22:00:33 >>> dev-tcltk/tix-8.4.3-r2
2022-07-30T22:00:43 >>> x11-libs/cairo-1.16.0-r5
2022-07-30T22:00:54 >>> dev-lang/python-3.8.13_p2
2022-07-30T22:01:13 >>> dev-lang/python-3.9.13
2022-07-30T22:01:34 >>> app-text/docbook-xml-dtd-4.3-r2
2022-07-30T22:01:36 >>> sci-libs/netcdf-4.9.0
2022-07-30T22:01:38 >>> media-fonts/font-util-1.3.3
2022-07-30T22:01:39 >>> x11-libs/libXft-2.3.4
2022-07-30T22:01:43 >>> x11-libs/libxkbcommon-1.4.1
2022-07-30T22:01:41 >>> dev-lang/vala-0.56.2
2022-07-30T22:01:44 >>> dev-python/numpy-1.23.1
2022-07-30T22:01:48 >>> dev-python/PyQt5-sip-12.10.1
2022-07-30T22:01:46 >>> dev-python/pmw-2.0.1-r3
2022-07-30T22:01:50 >>> dev-python/ply-3.11-r2
2022-07-30T22:01:51 >>> dev-python/toml-0.10.2-r1
2022-07-30T22:01:53 >>> dev-python/pygments-2.12.0-r1
2022-07-30T22:01:57 >>> dev-python/mako-1.2.1
2022-07-30T22:01:55 >>> dev-python/cython-0.29.32
2022-07-30T22:02:16 >>> x11-libs/gdk-pixbuf-2.42.8
2022-07-30T22:02:30 >>> x11-libs/pango-1.50.8
2022-07-30T22:03:12 >>> dev-python/sip-6.6.2
2022-07-30T22:03:20 >>> dev-python/docutils-0.19
2022-07-30T22:03:41 >>> dev-util/gtk-update-icon-cache-3.24.31
2022-07-30T22:03:53 >>> dev-python/PyQt-builder-1.12.2
2022-07-30T22:04:03 >>> sci-chemistry/chemical-mime-data-0.1.94-r4
2022-07-30T22:04:01 >>> dev-python/pyopengl-3.1.6
2022-07-30T22:04:05 >>> gnome-base/librsvg-2.54.4
2022-07-30T22:04:13 >>> dev-qt/qtgui-5.15.5-r1
2022-07-30T22:05:08 >>> dev-qt/qtwidgets-5.15.5-r1
2022-07-30T22:05:17 >>> dev-qt/qtopengl-5.15.5
2022-07-30T22:05:28 >>> dev-python/PyQt5-5.15.6




#######################################
# installed packages (qlist -ICvUSS): #
#######################################
acct-group/audio-0-r1:0
acct-group/cdrom-0-r1:0
acct-group/dialout-0-r1:0
acct-group/disk-0-r1:0
acct-group/input-0-r1:0
acct-group/kmem-0-r1:0
acct-group/kvm-0-r1:0
acct-group/lp-0-r1:0
acct-group/man-0-r1:0
acct-group/messagebus-0-r1:0
acct-group/polkitd-0-r1:0
acct-group/portage-0:0
acct-group/render-0-r1:0
acct-group/sgx-0:0
acct-group/sshd-0-r1:0
acct-group/tape-0-r1:0
acct-group/tty-0-r1:0
acct-group/video-0-r1:0
acct-user/man-1-r1:0
acct-user/messagebus-0-r1:0
acct-user/polkitd-0-r1:0
acct-user/portage-0:0
acct-user/sshd-0-r1:0
app-admin/eselect-1.4.20:0 -doc -emacs -vim-syntax
app-admin/perl-cleaner-2.30:0
app-arch/bzip2-1.0.8-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs -verify-sig
app-arch/gzip-1.12:0 -pic -static -verify-sig
app-arch/libarchive-3.6.1:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd
app-arch/tar-1.34:0 acl -minimal nls -selinux -verify-sig xattr
app-arch/unzip-6.0_p26:0 bzip2 -natspec unicode
app-arch/xz-utils-5.2.5-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 extra-filters nls split-usr -static-libs -verify-sig
app-arch/zstd-1.5.2-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 split-usr -static-libs threads
app-crypt/gnupg-2.3.7-r1:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server
app-crypt/gpgme-1.17.1-r1:1/11.6.15 -common-lisp cxx -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -qt5 -static-libs -test -verify-sig
app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs
app-crypt/libmd-1.0.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32
app-crypt/pinentry-1.2.0-r1:0 -caps -efl -emacs -gnome-keyring -gtk ncurses -qt5
app-crypt/rhash-1.4.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls ssl -static-libs
app-editors/nano-6.3:0 -debug -justify -magic -minimal ncurses nls spell split-usr -static unicode
app-eselect/eselect-blas-0.2:0
app-eselect/eselect-fontconfig-20220403:0
app-eselect/eselect-iptables-20220320:0
app-eselect/eselect-lapack-0.2:0
app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0
app-eselect/eselect-pinentry-0.7.2:0
app-eselect/eselect-rust-20210703:0
app-i18n/man-pages-ja-20180315-r1:0
app-i18n/man-pages-l10n-4.14.0-r1:0 l10n_cs l10n_da l10n_de l10n_el l10n_es l10n_fi l10n_fr l10n_hu l10n_id l10n_it l10n_mk l10n_nb l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_sr l10n_sv l10n_uk l10n_vi
app-i18n/man-pages-ru-5.03.2390.2390.20191017-r1:0
app-i18n/man-pages-zh_CN-1.6.3.6:0
app-misc/c_rehash-1.7-r1:0
app-misc/ca-certificates-20211016.3.80:0 -cacert
app-misc/editor-wrapper-4-r1:0
app-misc/mime-types-2.1.53:0 -nginx
app-misc/pax-utils-1.3.4:0 -caps -debug -python python_single_target_python3_10 -python_single_target_python3_8 -python_single_target_python3_9 seccomp
app-misc/tmux-3.3a:0 -debug -selinux -systemd -utempter -vim-syntax
app-portage/eix-0.36.4:0 -debug -doc nls -sqlite
app-portage/elt-patches-20211104:0
app-portage/gemato-16.2:0 gpg python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test -tools
app-portage/gentoolkit-0.6.1-r3:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
app-portage/portage-utils-0.94.1:0 nls openmp qmanifest qtegrity -static
app-shells/bash-5.1_p16:0 -afs -bashlogger -examples -mem-scramble net nls -plugins readline -verify-sig
app-shells/bash-completion-2.11:0 eselect -test
app-shells/gentoo-bashcomp-20190211-r1:0
app-shells/push-3.4:0
app-shells/quoter-4.2:0
app-text/ansifilter-2.18:0 -qt5
app-text/build-docbook-catalog-2.3-r1:0
app-text/docbook-xml-dtd-4.5-r2:4.5
app-text/docbook-xml-dtd-4.4-r3:4.4
app-text/docbook-xml-dtd-4.3-r2:4.3
app-text/docbook-xml-dtd-4.2-r3:4.2
app-text/docbook-xml-dtd-4.1.2-r7:4.1.2
app-text/docbook-xsl-stylesheets-1.79.1-r3:0 -ruby
app-text/manpager-1:0
app-text/opensp-1.5.2-r7:0 -doc nls -static-libs -test
app-text/po4a-0.66:0 -test -test
app-text/sgml-common-0.6.3-r7:0
app-text/xmlto-0.0.28-r8:0 -latex text
dev-db/sqlite-3.39.2:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools
dev-lang/duktape-2.7.0-r1:0/2.7.0
dev-lang/nasm-2.15.05:0 -doc
dev-lang/perl-5.36.0:0/5.36 -berkdb -debug -doc gdbm ithreads -minimal -quadmath
dev-lang/python-3.11.0_beta5:3.11 -bluetooth -build -examples gdbm -hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst
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dev-lang/python-exec-2.4.9:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-lang/python-exec-conf-2.4.6:2 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
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dev-lang/tcl-8.6.12:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug threads
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dev-lang/vala-0.56.2:0.56 -test -valadoc
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dev-libs/double-conversion-3.2.0:0/3 -test
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dev-libs/fribidi-1.0.12:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test
dev-libs/glib-2.72.3:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus -debug elf -fam -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr
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dev-libs/gobject-introspection-common-1.72.0:0
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dev-libs/jsoncpp-1.9.5:0/25 -doc -test
dev-libs/libassuan-2.5.5:0
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dev-libs/libbsd-0.11.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig
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dev-libs/libgpg-error-1.45:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -common-lisp nls -static-libs -test
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dev-libs/libpcre-8.45-r1:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 cxx jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode zlib
dev-libs/libpcre2-10.40:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode -verify-sig zlib
dev-libs/libpipeline-1.5.6:0 -test
dev-libs/libtasn1-4.18.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test -valgrind
dev-libs/libunistring-1.0:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs
dev-libs/libuv-1.44.2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
dev-libs/libxml2-2.9.14-r1:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -examples -icu -lzma python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 readline -static-libs -test
dev-libs/libxslt-1.1.35:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 crypt -debug -examples -static-libs
dev-libs/lzo-2.10:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples split-usr -static-libs
dev-libs/mmtf-cpp-1.0.0-r1:0
dev-libs/mpc-1.2.1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/mpfr-4.1.0_p13-r1:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/msgpack-3.3.0:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -boost cxx -doc -examples -static-libs -test
dev-libs/nettle-3.8.1:0/8-6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec cpu_flags_x86_aes cpu_flags_x86_pclmul -cpu_flags_x86_sha -doc gmp -static-libs -verify-sig
dev-libs/npth-1.6-r1:0 -test
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dev-libs/popt-1.18:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs
dev-libs/vala-common-0.56.2:0
dev-libs/wayland-1.21.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test
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dev-tcltk/tix-8.4.3-r2:0
dev-util/checkbashisms-2.22.2:0
dev-util/cmake-3.23.3:0 -doc -emacs ncurses -qt5 -test -test -verify-sig
dev-util/desktop-file-utils-0.26-r2:0 -emacs
dev-util/glib-utils-2.72.3:0 python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_8 -python_single_target_python3_9
dev-util/gperf-3.1:0
dev-util/gtk-doc-am-1.33.2:0
dev-util/gtk-update-icon-cache-3.24.31:0
dev-util/intltool-0.51.0-r3:0
dev-util/meson-0.63.0:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-util/meson-format-array-0:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
dev-util/ninja-1.11.0:0 -doc -emacs -test -vim-syntax
dev-util/pkgconf-1.8.0-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -test
dev-util/re2c-2.2:0 -debug -test
dev-util/wayland-scanner-1.21.0:0
dev-vcs/git-2.35.1:0 blksha1 -cgi curl -cvs -doc -gnome-keyring gpg -highlight iconv -mediawiki -mediawiki-experimental nls pcre -perforce -perl -ppcsha1 python_single_target_python3_10 -python_single_target_python3_8 -python_single_target_python3_9 -selinux -subversion -test threads -tk webdav -xinetd
gnome-base/librsvg-2.54.4:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -gtk-doc introspection vala
media-fonts/font-util-1.3.3:0
media-fonts/liberation-fonts-2.1.3:0 -X -X -fontforge
media-gfx/graphite2-1.3.14_p20210810-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -perl -test
media-gfx/imagemagick-7.1.0.44:0/7.1.0-43 -X bzip2 -corefonts cxx -djvu -fftw -fontconfig -fpx -graphviz -hdri -heif -jbig -jpeg -jpeg2k -lcms -lqr -lzma -opencl -openexr openmp -pango -perl png -postscript -q32 -q8 -raw -static-libs -svg -test -tiff -truetype -webp -wmf -xml -zip zlib
media-libs/fontconfig-2.14.0-r1:1.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs -test
media-libs/freeglut-3.2.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
media-libs/freetype-2.12.1:2 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adobe-cff -brotli bzip2 cleartype-hinting -debug -doc -fontforge harfbuzz -infinality png -static-libs -svg -utils
media-libs/glew-2.2.0:0/2.2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs
media-libs/glm-0.9.9.8-r1:0 cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_sse2 cpu_flags_x86_sse3 -test
media-libs/glu-9.0.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
media-libs/harfbuzz-5.0.1:0/4.0.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 cairo -debug -doc -experimental glib graphite -icu introspection -test truetype
media-libs/libglvnd-1.4.0:0 X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -test
media-libs/libjpeg-turbo-2.1.3:0/0.2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_neon -java -java -static-libs
media-libs/libpng-1.6.37-r2:0/16 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -apng -cpu_flags_arm_neon cpu_flags_x86_sse -static-libs
media-libs/mesa-22.1.3:0 X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 cpu_flags_x86_sse2 -d3d9 -debug -gles1 gles2 llvm -lm-sensors -opencl -osmesa -selinux -test -unwind -vaapi -valgrind -vdpau -video_cards_freedreno video_cards_intel -video_cards_lima video_cards_nouveau -video_cards_panfrost -video_cards_r300 -video_cards_r600 video_cards_radeon video_cards_radeonsi -video_cards_v3d -video_cards_vc4 -video_cards_virgl -video_cards_vivante -video_cards_vmware -vulkan -vulkan-overlay wayland -xa -xvmc -zink zstd
media-video/mpeg-tools-1.5b-r5:0
net-dns/libidn2-2.3.3:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig
net-firewall/iptables-1.8.8-r4:0/1.8.3 -conntrack -netlink -nftables -pcap split-usr -static-libs
net-libs/gnutls-3.7.7:0/30.30 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -brotli cxx -dane -doc -examples -guile idn nls openssl -pkcs11 seccomp -sslv2 -sslv3 -static-libs -test -test-full tls-heartbeat -tools -valgrind -verify-sig zlib -zstd
net-libs/libmnl-1.0.5:0/0.2.0 -examples -verify-sig
net-libs/libnsl-2.0.0-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
net-libs/libtirpc-1.3.2-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 ipv6 -kerberos split-usr -static-libs
net-libs/nghttp2-1.48.0:0/1.14 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx -debug -hpack-tools -jemalloc -static-libs -test threads -utils -xml
net-misc/curl-7.84.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -adns -alt-svc -brotli -curl_ssl_gnutls -curl_ssl_mbedtls -curl_ssl_nss curl_ssl_openssl ftp -gnutls -gopher -hsts http2 -idn imap ipv6 -kerberos -ldap -mbedtls -nghttp3 -nss openssl pop3 progress-meter -quiche -rtmp -samba smtp -ssh ssl -sslv3 -static-libs -telnet -test tftp -threads -verify-sig -zstd
net-misc/dhcpcd-9.4.1:0 -debug embedded ipv6 -privsep udev
net-misc/iputils-20211215:0 arping -caps -clockdiff -doc filecaps -idn nls -rarpd -rdisc -static -test -tracepath
net-misc/netifrc-0.7.3-r1:0 dhcp
net-misc/openssh-9.0_p1-r2:0 -X -X509 -abi_mips_n32 -audit -debug -hpn -kerberos -ldns -libedit -livecd pam pie -sctp -security-key -selinux ssl -static -test -verify-sig -xmss
net-misc/rsync-3.2.4-r3:0 acl -examples iconv ipv6 -lz4 python_single_target_python3_10 -python_single_target_python3_8 -python_single_target_python3_9 ssl -stunnel -system-zlib -verify-sig xattr -xxhash -zstd
net-misc/wget-1.21.3-r1:0 -cookie-check -debug -gnutls -idn ipv6 -metalink nls -ntlm pcre ssl -static -test -uuid -verify-sig zlib
perl-core/Compress-Raw-Zlib-2.202.0:0
perl-core/File-Temp-0.231.100:0
sci-chemistry/chemical-mime-data-0.1.94-r4:0
sci-libs/hdf5-1.12.2-r4:0/1.12.2 cxx -debug -examples fortran hl -mpi -szip -threads -unsupported zlib
sci-libs/lapack-3.10.1:0 -deprecated -doc eselect-ldso -lapacke -test
sci-libs/netcdf-4.9.0:0/19 dap -doc -examples -hdf hdf5 -mpi -szip -test -tools
sec-keys/openpgp-keys-gentoo-release-20220101:0 -test
sys-apps/acl-2.3.1-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls split-usr -static-libs
sys-apps/attr-2.5.1-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls split-usr -static-libs
sys-apps/baselayout-2.8-r2:0 -build split-usr
sys-apps/coreutils-9.1-r1:0 acl -caps -gmp -hostname -kill -multicall nls -selinux split-usr -static -test -vanilla -verify-sig xattr
sys-apps/dbus-1.14.0-r4:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc elogind -selinux -static-libs -systemd -test -test
sys-apps/debianutils-5.7:0 installkernel -static
sys-apps/diffutils-3.8:0 nls -static -verify-sig
sys-apps/file-5.42:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -seccomp -static-libs -verify-sig zlib
sys-apps/findutils-4.9.0:0 nls -selinux -static -test -verify-sig
sys-apps/gawk-5.1.1-r2:0 -mpfr nls readline -verify-sig
sys-apps/gentoo-functions-0.17:0
sys-apps/grep-3.7:0 nls pcre -static -verify-sig
sys-apps/groff-1.22.4:0 -X -examples -uchardet
sys-apps/help2man-1.48.5:0 nls
sys-apps/hwdata-0.361:0
sys-apps/install-xattr-0.8:0
sys-apps/iproute2-5.18.0-r1:0 -atm -berkdb -bpf -caps -elf iptables -libbsd -minimal -nfs -selinux split-usr
sys-apps/kbd-2.5.1:0 nls pam -test
sys-apps/kmod-30:0 -debug -doc lzma -pkcs7 -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs tools zlib zstd
sys-apps/less-590:0 pcre unicode
sys-apps/lsb-release-3.2:0
sys-apps/man-db-2.10.2-r1:0 manpager nls seccomp -selinux -static-libs zlib
sys-apps/man-pages-5.13:0 l10n_de l10n_es l10n_fr l10n_it l10n_ja l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_ru l10n_zh-CN
sys-apps/man-pages-posix-2017a:0
sys-apps/miscfiles-1.5-r4:0 -minimal
sys-apps/net-tools-2.10:0 arp hostname ipv6 -nis nls -plipconfig -selinux -slattach -static
sys-apps/openrc-0.45.2:0 -audit -bash -debug ncurses netifrc -newnet pam -selinux -sysv-utils unicode
sys-apps/portage-3.0.34:0 -apidoc -build -doc -gentoo-dev ipc native-extensions python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 rsync-verify -selinux -test xattr
sys-apps/sandbox-2.29:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 nnp
sys-apps/sed-4.8:0 acl nls -selinux -static -verify-sig
sys-apps/shadow-4.11.1:0/4 acl -audit -bcrypt -cracklib nls pam -selinux -skey split-usr -su xattr
sys-apps/systemd-utils-251.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -boot kmod -selinux split-usr -sysusers -test tmpfiles udev
sys-apps/sysvinit-3.04:0 -ibm nls -selinux -static -verify-sig
sys-apps/texinfo-6.8:0 nls standalone -static
sys-apps/util-linux-2.38:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -build -caps cramfs -cryptsetup -fdformat hardlink -kill logger -magic ncurses nls pam -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 readline -rtas -selinux -slang split-usr -static-libs su suid -systemd -test -tty-helpers -udev unicode -verify-sig
sys-apps/which-2.21:0
sys-auth/elogind-246.10-r2:0 acl -audit cgroup-hybrid -debug -doc pam policykit -selinux -test
sys-auth/pambase-20220214:0 -caps -debug elogind -gnome-keyring -homed -minimal -mktemp nullok -pam_krb5 -pam_ssh passwdqc -pwhistory -pwquality -securetty -selinux sha512 -systemd -yescrypt
sys-auth/passwdqc-2.0.2-r1:0
sys-auth/polkit-121:0 duktape -examples -gtk introspection -kde pam -selinux -systemd -test
sys-devel/autoconf-2.71-r1:2.71 -emacs
sys-devel/autoconf-archive-2022.02.11:0
sys-devel/autoconf-wrapper-20220130:0
sys-devel/automake-1.16.5:1.16 -test
sys-devel/automake-wrapper-11-r1:0
sys-devel/binutils-2.38-r2:2.38 -cet -default-gold -doc gold -multitarget nls -pgo plugins -static-libs -test -vanilla
sys-devel/binutils-config-5.4.1:0 native-symlinks
sys-devel/bison-3.8.2:0 -examples nls -static -test -verify-sig
sys-devel/flex-2.6.4-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static -test
sys-devel/gcc-12.1.1_p20220625:12 -ada -cet -custom-cflags cxx -d -debug -doc -fixed-point fortran -go graphite -hardened -jit -libssp lto multilib nls nptl -objc -objc++ -objc-gc openmp -pch -pgo pie sanitize ssp -systemtap -test -valgrind -vanilla -vtv -zstd
sys-devel/gcc-config-2.5-r1:0 cc-wrappers native-symlinks
sys-devel/gettext-0.21-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -cvs cxx -doc -emacs -git -java -java ncurses nls openmp -static-libs -verify-sig
sys-devel/gnuconfig-20220508:0
sys-devel/libtool-2.4.7:2 -vanilla
sys-devel/llvm-14.0.6-r2:14 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 binutils-plugin -debug -doc -doc -exegesis -libedit libffi llvm_targets_AArch64 llvm_targets_AMDGPU -llvm_targets_ARC llvm_targets_ARM llvm_targets_AVR llvm_targets_BPF -llvm_targets_CSKY llvm_targets_Hexagon llvm_targets_Lanai -llvm_targets_M68k llvm_targets_MSP430 llvm_targets_Mips llvm_targets_NVPTX llvm_targets_PowerPC llvm_targets_RISCV llvm_targets_Sparc llvm_targets_SystemZ llvm_targets_VE llvm_targets_WebAssembly llvm_targets_X86 llvm_targets_XCore ncurses -test -verify-sig -xar -xml -z3
sys-devel/llvm-common-14.0.6:0 -verify-sig
sys-devel/llvmgold-14:0
sys-devel/m4-1.4.19:0 -examples nls -verify-sig
sys-devel/make-4.3:0 -guile nls -static -verify-sig
sys-devel/patch-2.7.6-r4:0 -static -test -verify-sig xattr
sys-fs/e2fsprogs-1.46.5-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse -lto nls split-usr -static-libs -test threads tools
sys-fs/udev-init-scripts-35:0
sys-kernel/installkernel-gentoo-5:0 -grub
sys-kernel/linux-headers-5.18-r1:0 -experimental-loong -headers-only
sys-libs/binutils-libs-2.38-r2:0/2.38 -64-bit-bfd -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cet -multitarget nls -static-libs
sys-libs/gdbm-1.23:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs -verify-sig
sys-libs/glibc-2.35-r8:2.2 -audit -caps -cet clone3 -compile-locales -crypt -custom-cflags -doc -experimental-loong -gd -headers-only multiarch multilib -multilib-bootstrap -nscd -profile -selinux ssp stack-realign static-libs -suid -systemd -systemtap -test -vanilla
sys-libs/libcap-2.65:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam split-usr -static-libs -tools
sys-libs/libseccomp-2.5.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -experimental-loong -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs -test
sys-libs/libxcrypt-4.4.28-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 compat split-usr -static-libs system -test
sys-libs/mtdev-1.1.6:0
sys-libs/ncurses-6.3_p20220423-r1:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx -debug -doc -gpm -minimal -profile split-usr stack-realign -static-libs -test tinfo -trace -verify-sig
sys-libs/pam-1.5.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug filecaps -nis -selinux
sys-libs/readline-8.1_p2:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static-libs unicode -utils -verify-sig
sys-libs/timezone-data-2022a:0 -leaps-timezone nls -zic-slim
sys-libs/zlib-1.2.12-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs -verify-sig
sys-process/procps-3.3.17-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode
sys-process/psmisc-23.4-r1:0 -X ipv6 nls -selinux
virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
virtual/awk-1:0
virtual/cblas-3.8:0 -eselect-ldso
virtual/dev-manager-0-r2:0
virtual/editor-0-r3:0
virtual/fortran-0-r1:0 openmp
virtual/glu-9.0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32
virtual/jpeg-100-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
virtual/lapack-3.10:0 -eselect-ldso
virtual/libc-1-r1:0
virtual/libcrypt-2:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
virtual/libelf-3-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32
virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
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virtual/man-0-r4:0
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virtual/tmpfiles-0-r3:0
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#######################
# build.log           #
#######################
>>> Unpacking source...
>>> Unpacking pymol-1.8.4.0.png.xz to /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work
>>> Unpacking pymol-2.5.0.tar.gz to /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0 ...
 * Non-PEP517 builds are deprecated for ebuilds using plain distutils.
 * Please migrate to DISTUTILS_USE_PEP517=setuptools.
 * Please see Python Guide for more details:
 *   https://projects.gentoo.org/python/guide/distutils.html
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0 ...
 * python3_8: running distutils-r1_run_phase distutils-r1_python_compile
python3.8 setup.py build -j 16
fatal: not a git repository (or any parent up to mount point /var/tmp)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
running build
running build_py
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol2
copying modules/pymol2/cmd2.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol2
copying modules/pymol2/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol2
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/xwin.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/xray.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/wizarding.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/viewing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/vfont.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/util.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/shortcut_manager.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/shortcut_dict.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/shortcut.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/setting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/seqalign.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/selector.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/selecting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/save_shortcut.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/rpc.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/querying.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/pymolhttpd.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/preset.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/povray.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/parsing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/parser.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/mpeg_encode.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/moving.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/movie.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/morphing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/monitoring.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/menu.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/locking.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/lazyio.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/keywords.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/keyboard.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/invocation.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/internal.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/importing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/helping.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/headering.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/fitting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/feedingback.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/externing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/exporting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/experimenting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/editor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/editing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/diagnosing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/creating.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/controlling.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/constants_palette.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/constants.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/computing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/completing.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/commanding.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/colorramping.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/colorprinting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/cmd.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/checking.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/cgo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/callback.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/api.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/__main__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
copying modules/pymol/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/toggle.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/security.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/renaming.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/openvr.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/message.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/measurement.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/label.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/filter.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/dragging.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/distance.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/density.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/demo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/command.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/charge.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/box.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/appearance.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/annotation.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
copying modules/pymol/wizard/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/wizard
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/stereochemistry
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
copying modules/pymol/plugins/repository.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
copying modules/pymol/plugins/managergui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
copying modules/pymol/plugins/installation.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
copying modules/pymol/plugins/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/plugins
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/Qt
copying modules/pymol/Qt/utils.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/Qt
copying modules/pymol/Qt/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/Qt
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/volume.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/TextEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/Setting.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/SetEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/PMGApp.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/Demo.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/startup
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/normal
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_tk/skins/demo
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/volume.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/keymapping.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/builder.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
copying modules/pmg_qt/TextEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/syntax
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/xyz.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/water_residues.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/water_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/solvate.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/sdf.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/protein_residues.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/protein_mmff.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/protein_amber99.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/protein_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/protein.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/place.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/pkl.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/pdb.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/neighbor.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/mol2.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/mol.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/models.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/mmd.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/mass.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/map.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/mae.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/lst.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/io.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/hetatm.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/gms.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/gamess1.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/dictdb.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/cpv.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/cif.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/charge.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/cc1.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/brick.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/bonds.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/bond_mmff.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/bond_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/arc.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
copying modules/chempy/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker
copying modules/chempy/tinker/state.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker
copying modules/chempy/tinker/realtime.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker
copying modules/chempy/tinker/keyword.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker
copying modules/chempy/tinker/amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker
copying modules/chempy/tinker/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/tinker
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mmtf
copying modules/chempy/mmtf/io.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/mmtf
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fragments
copying modules/chempy/fragments/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fragments
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fast
copying modules/chempy/fast/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/fast
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ
copying modules/chempy/champ/formal_charges.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ
copying modules/chempy/champ/assign.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ
copying modules/chempy/champ/amber99.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ
copying modules/chempy/champ/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/champ
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin
copying modules/chempy/bmin/util.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin
copying modules/chempy/bmin/state.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin
copying modules/chempy/bmin/realtime.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin
copying modules/chempy/bmin/commands.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin
copying modules/chempy/bmin/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/chempy/bmin
copying modules/pmg_qt/forms/shortcut_menu.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pmg_qt/forms
warning: build_py_pymol: byte-compiling is disabled, skipping.

running build_ext
building 'pymol._cmd' extension
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/build
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/build/generated
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/mmtf-c
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov
creating /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD build/generated/ShaderText.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/mmtf-c/mmtf_parser.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/mmtf-c/mmtf_parser.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  669 |   fgets(fbuffer, 1024, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |   fgets(fbuffer, 1024, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable]
  443 |   int i, uid;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable]
  484 |   int i, count, atomdata, pos, idx, xyzcount, j;
      |                                               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable]
  503 |   char oldChain[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
  803 |   int bondTable[32];
      |       ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable]
  807 |   int i, pos, j, k;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
  811 |   char modelNum[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable]
  822 |   molfile_atom_t * atom;
      |                    ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable]
  884 |   int test = parser->nbonds + bnum;
      |       ^~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
  984 |   int bondTable[32];
      |       ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable]
  988 |   int i, pos, j, k;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
  991 |   char modelNum[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable]
 1002 |   molfile_atom_t * atom;
      |                    ^~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |         fgets(buf, 85, file);
      |         ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable]
 1409 |   FILE* fd;
      |         ^~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  257 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  275 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  289 |   fscanf(file, " %d", &cur);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  238 |   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
      |                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  150 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parmstruct* read_parm7_header(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  368 |   fgets(sdum, 512, file);
      |   ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  371 |   fscanf(file, "%s\n", sdum); // "%FLAG"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  378 |   fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  385 |   fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  399 |   fgets(prm->title, sizeof(prm->title), file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  427 |     fgets(sdum, sizeof(sdum), file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  439 |   fscanf(file,parm7,
      |   ~~~~~~^~~~~~~~~~~~
  440 |          &prm->Natom,  &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  441 |          &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  442 |          &prm->Jparm,  &prm->Nparm);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  443 |   fscanf(file, parm7,
      |   ~~~~~~^~~~~~~~~~~~~
  444 |          &prm->Nnb,   &prm->Nres,   &prm->Mbona,  &prm->Mtheta,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  445 |          &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  446 |          &prm->Natyp, &prm->Nphb);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  447 |   fscanf(file, parm7,  &prm->Ifpert, &prm->Nbper,  &prm->Ngper,
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  448 |          &prm->Ndper, &prm->Mbper,  &prm->Mgper, &prm->Mdper,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  449 |          &prm->IfBox, &prm->Nmxrs,  &prm->IfCap);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  451 |   fscanf(file,"%8d",&prm->Numextra); //BB
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   71 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   75 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  278 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  297 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  319 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  357 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  223 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  164 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  176 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  183 |       fgets(line, LINESIZE, fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  102 |   fread(&headersize, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |   fread(&filen, sizeof(namdbin_int32), 1, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  240 |   fgets(readbuf, 13, edm->fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   44 |   fgets(readbuf, 1024, fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  232 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  246 |   for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  249 |   if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
      |                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  256 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  195 |  for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  198 |  if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
      |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  203 |    fgets(lineptr, LINESIZE, data->file);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   73 |   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’:
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  174 |   for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  180 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  189 |  for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  194 |    fgets(lineptr, LINESIZE, data->file);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |  for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   77 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  233 |         fread(brick, sizeof(char), 512, fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |   fread(fileHeader, sizeof(short), 19, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  275 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  289 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  199 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  209 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  127 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  138 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   74 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |   fgets(line, LINESIZE, fd);  // Read and ignore the mol_name
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   82 |   fgets(line, LINESIZE, fd);  // Read the molecule info
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |   fgets(line, LINESIZE, fd);  // Read and ignore the mol_type
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(line, LINESIZE, fd);  // Read the charge_type
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  435 |           fscanf(file, " " DBLFMT, &prm->Charges[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  444 |           fscanf(file, " " DBLFMT, &prm->Masses[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  510 |           fscanf(file, " " DBLFMT, &prm->Rk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  517 |           fscanf(file, " " DBLFMT, &prm->Req[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  524 |           fscanf(file, " " DBLFMT, &prm->Tk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  531 |           fscanf(file, " " DBLFMT, &prm->Teq[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  538 |           fscanf(file, " " DBLFMT, &prm->Pk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  545 |           fscanf(file, " " DBLFMT, &prm->Pn[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  552 |           fscanf(file, " " DBLFMT, &prm->Phase[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |           fscanf(file, " " DBLFMT, &prm->Solty[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  567 |           fscanf(file, " " DBLFMT, &prm->Cn1[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  575 |           fscanf(file, " " DBLFMT, &prm->Cn2[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  756 |           fscanf(file, " " DBLFMT, &prm->HB12[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  763 |           fscanf(file, " " DBLFMT, &prm->HB6[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  771 |           fscanf(file, " " DBLFMT, &H[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  853 |                 fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  854 |                                 &prm->Box[0], &prm->Box[1], &prm->Box[2]);
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  867 |                 fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  868 |                                 &prm->Natcap, &prm->Cutcap,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  869 |                                 &prm->Xcap, &prm->Ycap, &prm->Zcap);
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   84 |   fread(&dataBegin, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  175 |   fgets(readbuf, 1023, cube->fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  181 |   fgets(readbuf, 1023, cube->fd); // skip second header line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  326 |       fgets(readbuf, 1023, cube->fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  337 |       fgets(readbuf, 1023, cube->fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  339 |     fscanf(cube->fd, "%d", &cube->nsets);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  344 |       fscanf(cube->fd, "%d", &orb);
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  349 |     fgets(readbuf, 1023, cube->fd);  // gobble up rest of line
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  283 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  228 |   for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  233 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |       for (i = 0; i < 2; ++i)  fgets(lineptr, LINESIZE, data->file);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  252 |   for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘open_vaspxdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   89 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |     fgets(lineptr, LINESIZE, poscar);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  121 |       fgets(lineptr, LINESIZE, poscar);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  247 |         fread(brick, sizeof(char), 512, fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fscanf(fd, "%3s", keyWord);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |   fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   93 |   fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  100 |   fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  109 |   fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  110 |          &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |   fscanf(fd, " %s %f", keyWord, &prod);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  128 |   fscanf(fd, " %s %f", keyWord, &plus);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  135 |   fscanf(fd, " %s %f", keyWord, &sigma);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  243 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  252 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  328 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  346 |   fgets(line, LINESIZE, bgf->file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  355 |     fgets(nextline, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  419 |         fgets(line, LINESIZE, bgf->file);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  194 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  203 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   59 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
      |                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  282 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  150 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   71 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   75 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fread(&dataBegin, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  286 |   fread(datablock, total * sizeof(float), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘count_orbitals’:
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1165 |   fscanf(data->file, " Ene= %f\n", &orbenergy);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1166 |   fscanf(data->file, " Spin= %s\n", spin);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1167 |   fscanf(data->file, " Occup= %f\n", &occu);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  840 |     fgets(readbuf, 1024, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  326 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  339 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  344 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  349 |   fgets(line, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  363 |       fgets(line, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  373 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  266 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  268 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  272 |   fgets(line, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  295 |       fgets(line, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  305 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  169 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  179 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  182 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  210 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  213 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  226 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  230 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  234 |       fgets(line, LINESIZE, fd);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  245 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘open_molden_read’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |           fscanf(data->file, "%d", &natm);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’:
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   64 |   fread(magicchar,sizeof(char),4,fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |   fread(&igarb,sizeof(int),1,fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  139 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  144 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘open_vaspxml_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |        fgets(lineptr, LINESIZE, data->file);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |        fgets(lineptr, LINESIZE, data->file);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  239 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  242 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |          fgets(lineptr, LINESIZE, data->file);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   67 |   fgets(title, 82, fd);
      |   ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   70 |   fgets(line, 82, fd);
      |   ^~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Crystal.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  840 |     fgets(readbuf, 1024, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Field.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  426 |         fgets(buf, n, mf->f);
      |         ~~~~~^~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Isosurf.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   fread(intHeader, sizeof(int), 5, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   82 |   fread(floatHeader, sizeof(float), 6, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/MemoryDebug.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   96 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  104 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  119 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |         fgets(line, 80, infile);
      |         ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  153 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  162 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  171 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Block.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  304 |       fgets(symData, 81, fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  116 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  132 |    fgets(line, 80, infile);
      |    ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  149 |      fgets(line, 80, infile);
      |      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  155 |               fgets(line, 80, infile);
      |               ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  161 |      fgets(line, 80, infile); //one more read to keep us in sync
      |      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  170 |                      fgets(line, 80, infile);
      |                      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  217 |          fgets(line, 80, infile);
      |          ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |                  fgets(line, 80, infile);
      |                  ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  256 |          fgets(line, 80, infile);
      |          ~~~~~^~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Pixmap.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Sphere.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable]
  459 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable]
 1407 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable]
 1541 |   int i,j,k;
      |       ^
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Triangle.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Word.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1629 |       fread (&len, sizeof(int), 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1631 |       fread (str, len, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2057 |       fread (ptr, 1, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2063 |       fread (ptr, 1, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2069 |       fread (ptr, 2, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2075 |       fread (ptr, 2, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2081 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2087 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2093 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2099 |       fread (ptr, 8, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Basis.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  371 |         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  306 |         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/MemoryUsage.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  288 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  297 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Character.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  365 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  387 |   fgets(line, LINESIZE, bgf->file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  395 |     fgets(nextline, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  455 |         fgets(line, LINESIZE, bgf->file);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  250 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  186 |   fread(line3, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’
  284 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  285 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’
  291 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’
  305 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  306 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’
  307 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’
  311 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’
  313 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’
  318 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  319 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’
  320 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’
  328 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  329 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’
  330 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’
  354 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  355 |   fread(vertex, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’
  356 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’
  357 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  358 |   fread(access, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’
  359 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’
  360 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  361 |   fread(normal, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’
  362 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’
  371 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  372 |     fread(triangle, 3 * sizeof(int), ntriangles, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’
  373 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’
  374 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  375 |     fread(properties, 3 * sizeof(float), nvert, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’
  394 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  395 |     fread(striangle, sizeof(short), 3 * ntriangles, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’
  396 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’
  397 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  398 |     fread(properties, sizeof(float), 3 * nvert, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Font.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/PostProcess.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  238 |   fgets(readbuf, 1024, fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  408 |         fgets(readbuf, 256, xsf->fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  442 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  444 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  446 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  448 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  450 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  473 |                 fgets(readbuf, 256, xsf->fd);
      |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  508 |           fgets(readbuf, 256, xsf->fd);
      |           ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable]
 1904 |     int last_ctnumber = -1;
      |         ^~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUTHel10.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’:
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
   38 |     std::fscanf(fp, "%*zu%zu", &vmRSS);
      |                     ^~~~~~~~~
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   38 |     std::fscanf(fp, "%*zu%zu", &vmRSS);
      |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/MyPNG.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Tetsurf.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUT.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/mmtf-c/mmtf_parser.cpp: In function ‘bool MMTF_unpack_from_file(const char*, MMTF_container*)’:
contrib/mmtf-c/mmtf_parser.cpp:1071:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1071 |     fread(buffer, fileLen, 1, file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/ccealignmodule.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/ButMode.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUTHel12.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Util.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/CarveHelper.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/File.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Map.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/ShaderMgr.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  970 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  971 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1113 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1114 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Deferred.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1511 |   fread(skip, 1, 8, fp);
      |   ^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  619 |     fscanf(data->file, "%*s %f %f %f", &x, &y, &z);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Movie.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUTHel18.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Color.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Picking.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Err.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/ContourSurf.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/GenericBuffer.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Pop.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Parse.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Util2.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Rep.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontType.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Match.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SceneRay.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/marching_cubes.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/PyMOLObject.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Texture.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Feedback.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Setting.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUT8x13.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/CGO.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Matrix.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/GraphicsUtil.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Vector.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/FontGLUT9x15.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/os_gl.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SymOpTools.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/View.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/AtomInfoHistory.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/CoordSet.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/MmodTyping.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectAlignment.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Scene.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectGadget.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Ortho.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/Tracker.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Control.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SceneRender.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectMesh.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Symmetry.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/MmtfMoleculeReader.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/BondTypeHistory.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Ray.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer0/ShaderPrg.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Wizard.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/CifFile.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectGadgetRamp.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Text.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/DistSet.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Shaker.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectCGO.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/Mol2Typing.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/P.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Extrude.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/ScrollBar.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SceneMouse.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectMolecule.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/COLLADA.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
layer1/Wizard.cpp: In member function ‘virtual int CWizard::release(int, int, int, int)’:
layer1/Wizard.cpp:571:18: warning: unused variable ‘wiz’ [-Wunused-variable]
  571 |         if (auto wiz = WizardGet(G)) {
      |                  ^~~
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectSlice.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/CifMoleculeReader.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepCartoon.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectGroup.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/AssemblyHelpers.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/MolV3000.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SymOp.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/Seq.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectCallback.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/GadgetSet.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/SymOpPConv.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/PConv.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepDistLabel.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectMap.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepMesh.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepSphere.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/ScenePicking.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/AtomInfo.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepWireBond.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectSurface.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectDist.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/VFont.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepCylBond.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepDot.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/Executive.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/HydrogenAdder.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepSphereGenerate.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepNonbonded.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/Sculpt.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/MovieScene.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/Selector.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer4/Cmd.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectMolecule2.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/AtomIterators.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectVolume.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer5/TestPyMOL.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepEllipsoid.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVHeapArray.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVRandom.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepDihedral.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVLexicon.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepNonbondedSphere.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/ov_utility.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVOneToAny.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepSphereImmediate.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVOneToOne.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/SculptCache.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/SideChainHelper.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepLabel.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/CifDataValueFormatter.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer5/main.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/PlugIOManager.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/ObjectMolecule3.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/Editor.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepAngle.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepRibbon.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepDistDash.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer2/RepSurface.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer4/Menu.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVContext.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/SelectorTmp.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD ov/src/OVHeap.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/RingFinder.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/ExecutivePython.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer4/PopUp.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/SpecRec.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/Seeker.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/MaeExportHelpers.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer5/PyMOL.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/SpecRecSpecial.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer3/MoleculeExporter.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.8 -c -MMD layer1/TypeFace.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3
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/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o 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/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVHeap.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVHeapArray.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVLexicon.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVOneToAny.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVOneToOne.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/OVRandom.o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/temp.linux-x86_64-3.8/ov/src/ov_utility.o -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0-python3_8/lib/pymol/_cmd.cpython-38-x86_64-linux-gnu.so -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:62:16: error: type ‘struct parm’ violates the C++ One Definition Rule [-Werror=odr]
   62 | typedef struct parm {
      |                ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:59:16: note: a different type is defined in another translation unit
   59 | typedef struct parm {
      |                ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:63:8: note: the first difference of corresponding definitions is field ‘title’
   63 |   char title[85];
      |        ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:60:17: note: a field with different name is defined in another translation unit
   60 |         char    ititl[81];
      |                 ^
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:33:3: error: type ‘struct parmdata’ violates the C++ One Definition Rule [-Werror=odr]
   33 | } parmdata;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:32:3: note: a different type is defined in another translation unit
   32 | } parmdata;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:28:15: note: the first difference of corresponding definitions is field ‘prm’
   28 |   parmstruct *prm;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:28:13: note: a field with different name is defined in another translation unit
   28 |   ReadPARM *rp;
      |             ^
layer0/Isosurf.cpp:47:16: error: type ‘struct PointType’ violates the C++ One Definition Rule [-Werror=odr]
   47 | typedef struct PointType {
      |                ^
layer0/Tetsurf.cpp:46:3: note: a different type is defined in another translation unit
   46 | } PointType;
      |   ^
layer0/Isosurf.cpp:49:7: note: the first difference of corresponding definitions is field ‘NLink’
   49 |   int NLink;
      |       ^
layer0/Tetsurf.cpp:43:9: note: a field with different name is defined in another translation unit
   43 |   float Normal[3];
      |         ^
ov/src/OVOneToAny.cpp:15:3: error: type ‘struct up_element’ violates the C++ One Definition Rule [-Werror=odr]
   15 | } up_element;
      |   ^
ov/src/OVOneToOne.cpp:15:3: note: a different type is defined in another translation unit
   15 | } up_element;
      |   ^
ov/src/OVOneToOne.cpp:14:25: note: the first difference of corresponding definitions is field ‘reverse_next’
   14 |   ov_size forward_next, reverse_next;
      |                         ^
ov/src/OVOneToOne.cpp:15:3: note: a type with different number of fields is defined in another translation unit
   15 | } up_element;
      |   ^
lto1: some warnings being treated as errors
lto-wrapper: fatal error: x86_64-pc-linux-gnu-g++ returned 1 exit status
compilation terminated.
/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: error: lto-wrapper failed
collect2: error: ld returned 1 exit status
error: command 'x86_64-pc-linux-gnu-g++' failed with exit status 1
 * ERROR: sci-chemistry/pymol-2.5.0-r1::gentoo failed (compile phase):
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line  122:  Called src_compile
 *   environment, line 4364:  Called distutils-r1_src_compile
 *   environment, line 2035:  Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile'
 *   environment, line  776:  Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 3948:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 3446:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 3444:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 *   environment, line 1225:  Called distutils-r1_run_phase 'distutils-r1_python_compile'
 *   environment, line 2017:  Called distutils-r1_python_compile
 *   environment, line 1819:  Called esetup.py 'build' '-j' '16'
 *   environment, line 2620:  Called die
 * The specific snippet of code:
 *       "${@}" || die -n;
 * 
 * If you need support, post the output of `emerge --info '=sci-chemistry/pymol-2.5.0-r1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-chemistry/pymol-2.5.0-r1::gentoo'`.
 * The complete build log is located at '/var/log/emerge-log/build/sci-chemistry/pymol-2.5.0-r1:20220730-200538.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0'
 * S: '/var/tmp/portage/sci-chemistry/pymol-2.5.0-r1/work/pymol-open-source-2.5.0'