Attachment 795736 Details for Bug 862252 – build.log

build.log

build.log (text/plain), 77.73 KB, created by Agostino Sarubbo on 2022-07-30 08:23:26 UTC

(hide)

Description:

Filename:

MIME Type:

Creator: Agostino Sarubbo

Created: 2022-07-30 08:23:26 UTC

Size: 77.73 KB

patch

obsolete

> * Package:    sci-biology/abyss-2.3.4
> * Repository: gentoo
> * Maintainer: sci-biology@gentoo.org
> * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux openmp userland_GNU
> * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>
>
>@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@
>This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix;
>This ebuild was merged at the following commit:
>https://github.com/gentoo-mirror/gentoo/commit/1c498968d5113c6af8b2d0cba80f2c8bb9b8eafa  (Sat Jul 30 02:49:31 UTC 2022)
>@@@@@ END @@@@@
>
>
>
>##################
># emerge --info: #
>##################
>Portage 3.0.34 (python 3.10.5-final-0, default/linux/amd64/17.1, gcc-12.1.1, glibc-2.35-r8, 4.19.174-gentoo x86_64)
>=================================================================
>System uname: Linux-4.19.174-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-glibc2.35
>KiB Mem:   264031016 total,  16275640 free
>KiB Swap:          0 total,         0 free
>Timestamp of repository gentoo: Sat, 30 Jul 2022 02:49:31 +0000
>sh bash 5.1_p16
>ld GNU ld (Gentoo 2.38 p4) 2.38
>app-misc/pax-utils:        1.3.4::gentoo
>app-shells/bash:           5.1_p16::gentoo
>dev-lang/perl:             5.36.0::gentoo
>dev-lang/python:           3.8.13_p2::gentoo, 3.9.13::gentoo, 3.10.5::gentoo, 3.11.0_beta5::gentoo
>dev-util/cmake:            3.23.3::gentoo
>dev-util/meson:            0.63.0::gentoo
>sys-apps/baselayout:       2.8-r2::gentoo
>sys-apps/openrc:           0.45.2::gentoo
>sys-apps/sandbox:          2.29::gentoo
>sys-devel/autoconf:        2.71-r1::gentoo
>sys-devel/automake:        1.16.5::gentoo
>sys-devel/binutils:        2.38-r2::gentoo
>sys-devel/binutils-config: 5.4.1::gentoo
>sys-devel/gcc:             12.1.1_p20220625::gentoo
>sys-devel/gcc-config:      2.5-r1::gentoo
>sys-devel/libtool:         2.4.7::gentoo
>sys-devel/make:            4.3::gentoo
>sys-kernel/linux-headers:  5.18-r1::gentoo (virtual/os-headers)
>sys-libs/glibc:            2.35-r8::gentoo
>Repositories:
>
>gentoo
>    location: /usr/portage
>    sync-type: rsync
>    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
>    priority: -1000
>    sync-rsync-extra-opts: 
>    sync-rsync-verify-metamanifest: yes
>    sync-rsync-verify-max-age: 24
>    sync-rsync-verify-jobs: 1
>
>ACCEPT_KEYWORDS="amd64 ~amd64"
>ACCEPT_LICENSE="* GPL-3"
>CBUILD="x86_64-pc-linux-gnu"
>CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing"
>CHOST="x86_64-pc-linux-gnu"
>CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
>CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
>CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing"
>DISTDIR="/var/tmp/portage/sci-biology/abyss-2.3.4/distdir"
>EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b"
>ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
>FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing"
>FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
>FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing"
>GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org"
>LANG="C.UTF8"
>LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0"
>MAKEOPTS="-j16"
>PKGDIR="/root/tbci/binpkg"
>PORTAGE_CONFIGROOT="/"
>PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
>PORTAGE_TMPDIR="/var/tmp"
>SHELL="/bin/bash"
>USE="acl amd64 bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU"
>Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
>
>
>
>
>
>##############################
># emerge history (qlop -mv): #
>##############################
>2022-07-30T05:20:10 >>> x11-misc/util-macros-1.19.3
>2022-07-30T05:20:07 >>> sys-apps/hwdata-0.361
>2022-07-30T05:20:13 >>> virtual/fortran-0-r1
>2022-07-30T05:20:14 >>> dev-cpp/sparsehash-2.0.4
>2022-07-30T05:20:16 >>> media-fonts/font-util-1.3.3
>2022-07-30T05:20:11 >>> dev-util/boost-build-1.79.0
>2022-07-30T05:20:31 >>> sys-apps/pciutils-3.8.0-r1
>2022-07-30T05:20:44 >>> x11-libs/libpciaccess-0.16-r1
>2022-07-30T05:20:50 >>> dev-libs/boost-1.79.0
>2022-07-30T05:21:04 >>> sys-apps/hwloc-2.8.0
>2022-07-30T05:21:24 >>> sys-cluster/openmpi-4.1.4
>
>
>
>
>#######################################
># installed packages (qlist -ICvUSS): #
>#######################################
>acct-group/audio-0-r1:0
>acct-group/cdrom-0-r1:0
>acct-group/dialout-0-r1:0
>acct-group/disk-0-r1:0
>acct-group/input-0-r1:0
>acct-group/kmem-0-r1:0
>acct-group/kvm-0-r1:0
>acct-group/lp-0-r1:0
>acct-group/man-0-r1:0
>acct-group/messagebus-0-r1:0
>acct-group/polkitd-0-r1:0
>acct-group/portage-0:0
>acct-group/render-0-r1:0
>acct-group/sgx-0:0
>acct-group/sshd-0-r1:0
>acct-group/tape-0-r1:0
>acct-group/tty-0-r1:0
>acct-group/video-0-r1:0
>acct-user/man-1-r1:0
>acct-user/messagebus-0-r1:0
>acct-user/polkitd-0-r1:0
>acct-user/portage-0:0
>acct-user/sshd-0-r1:0
>app-admin/eselect-1.4.20:0 -doc -emacs -vim-syntax
>app-admin/perl-cleaner-2.30:0
>app-arch/bzip2-1.0.8-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs -verify-sig
>app-arch/gzip-1.12:0 -pic -static -verify-sig
>app-arch/libarchive-3.6.1:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd
>app-arch/tar-1.34:0 acl -minimal nls -selinux -verify-sig xattr
>app-arch/unzip-6.0_p26:0 bzip2 -natspec unicode
>app-arch/xz-utils-5.2.5-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 extra-filters nls split-usr -static-libs -verify-sig
>app-arch/zstd-1.5.2-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 split-usr -static-libs threads
>app-crypt/gnupg-2.3.7-r1:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server
>app-crypt/gpgme-1.17.1-r1:1/11.6.15 -common-lisp cxx -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -qt5 -static-libs -test -verify-sig
>app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs
>app-crypt/libmd-1.0.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
>app-crypt/pinentry-1.2.0-r1:0 -caps -efl -emacs -gnome-keyring -gtk ncurses -qt5
>app-crypt/rhash-1.4.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls ssl -static-libs
>app-editors/nano-6.3:0 -debug -justify -magic -minimal ncurses nls spell split-usr -static unicode
>app-eselect/eselect-fontconfig-20220403:0
>app-eselect/eselect-iptables-20220320:0
>app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0
>app-eselect/eselect-pinentry-0.7.2:0
>app-i18n/man-pages-ja-20180315-r1:0
>app-i18n/man-pages-l10n-4.14.0:0 l10n_cs l10n_da l10n_de l10n_el l10n_es l10n_fi l10n_fr l10n_hu l10n_id l10n_it l10n_mk l10n_nb l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_sr l10n_sv l10n_uk l10n_vi
>app-i18n/man-pages-ru-5.03.2390.2390.20191017-r1:0
>app-i18n/man-pages-zh_CN-1.6.3.6:0
>app-misc/c_rehash-1.7-r1:0
>app-misc/ca-certificates-20211016.3.80:0 -cacert
>app-misc/editor-wrapper-4-r1:0
>app-misc/mime-types-2.1.53:0 -nginx
>app-misc/pax-utils-1.3.4:0 -caps -debug -python python_single_target_python3_10 -python_single_target_python3_8 -python_single_target_python3_9 seccomp
>app-misc/tmux-3.3a:0 -debug -selinux -systemd -utempter -vim-syntax
>app-portage/eix-0.36.4:0 -debug -doc nls -sqlite
>app-portage/elt-patches-20211104:0
>app-portage/gemato-16.2:0 gpg python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test -tools
>app-portage/gentoolkit-0.6.1-r3:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>app-portage/portage-utils-0.94.1:0 nls openmp qmanifest qtegrity -static
>app-shells/bash-5.1_p16:0 -afs -bashlogger -examples -mem-scramble net nls -plugins readline -verify-sig
>app-shells/bash-completion-2.11:0 eselect -test
>app-shells/gentoo-bashcomp-20190211-r1:0
>app-shells/push-3.4:0
>app-shells/quoter-4.2:0
>app-text/ansifilter-2.18:0 -qt5
>app-text/build-docbook-catalog-2.3-r1:0
>app-text/docbook-xml-dtd-4.5-r2:4.5
>app-text/docbook-xml-dtd-4.4-r3:4.4
>app-text/docbook-xml-dtd-4.2-r3:4.2
>app-text/docbook-xml-dtd-4.1.2-r7:4.1.2
>app-text/docbook-xsl-stylesheets-1.79.1-r3:0 -ruby
>app-text/manpager-1:0
>app-text/opensp-1.5.2-r7:0 -doc nls -static-libs -test
>app-text/po4a-0.66:0 -test -test
>app-text/sgml-common-0.6.3-r7:0
>app-text/xmlto-0.0.28-r8:0 -latex text
>dev-cpp/sparsehash-2.0.4:0
>dev-db/sqlite-3.39.2:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools
>dev-lang/duktape-2.7.0-r1:0/2.7.0
>dev-lang/perl-5.36.0:0/5.36 -berkdb -debug -doc gdbm ithreads -minimal -quadmath
>dev-lang/python-3.11.0_beta5:3.11 -bluetooth -build -examples gdbm -hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst
>dev-lang/python-3.10.5:3.10 -bluetooth -build -examples gdbm -hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml
>dev-lang/python-3.9.13:3.9 -bluetooth -build -examples gdbm -hardened -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml
>dev-lang/python-3.8.13_p2:3.8 -bluetooth -build -examples gdbm -hardened ncurses readline sqlite ssl -test -tk -verify-sig -wininst xml
>dev-lang/python-exec-2.4.9:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-lang/python-exec-conf-2.4.6:2 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
>dev-lang/tcl-8.6.12:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug threads
>dev-libs/boehm-gc-8.0.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx large -static-libs threads
>dev-libs/boost-1.79.0:0/1.79.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -context -debug -doc -icu -lzma -mpi nls -numpy -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -tools zlib -zstd
>dev-libs/elfutils-0.187:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma nls -static-libs -test -threads utils -valgrind -verify-sig -zstd
>dev-libs/expat-2.4.8:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs unicode
>dev-libs/glib-2.72.3:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus -debug elf -fam -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr
>dev-libs/gmp-6.2.1-r2:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cxx -doc -pic -static-libs
>dev-libs/gobject-introspection-1.72.0:0 -doctool -gtk-doc python_single_target_python3_10 -python_single_target_python3_8 -python_single_target_python3_9 -test
>dev-libs/gobject-introspection-common-1.72.0:0
>dev-libs/isl-0.24-r2:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
>dev-libs/jsoncpp-1.9.5:0/25 -doc -test
>dev-libs/libassuan-2.5.5:0
>dev-libs/libatomic_ops-7.6.12:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
>dev-libs/libbsd-0.11.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig
>dev-libs/libevent-2.1.12:0/2.1-7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 clock-gettime -debug -malloc-replacement ssl -static-libs -test threads -verbose-debug
>dev-libs/libffi-3.4.2-r2:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -exec-static-trampoline -experimental-loong -pax-kernel -static-libs -test
>dev-libs/libffi-compat-3.3-r2:7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -pax-kernel -test
>dev-libs/libgcrypt-1.10.1-r1:0/20 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_padlock -cpu_flags_x86_sha cpu_flags_x86_sse4_1 -doc -static-libs -verify-sig
>dev-libs/libgpg-error-1.45:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -common-lisp nls -static-libs -test
>dev-libs/libksba-1.6.0:0 -static-libs
>dev-libs/libltdl-2.4.7:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
>dev-libs/libpcre-8.45-r1:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 cxx jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode zlib
>dev-libs/libpcre2-10.40:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode -verify-sig zlib
>dev-libs/libpipeline-1.5.6:0 -test
>dev-libs/libtasn1-4.18.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test -valgrind
>dev-libs/libunistring-1.0:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs
>dev-libs/libuv-1.44.2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
>dev-libs/libxml2-2.9.14-r1:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -examples -icu -lzma python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 readline -static-libs -test
>dev-libs/libxslt-1.1.35:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 crypt -debug -examples -static-libs
>dev-libs/lzo-2.10:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples split-usr -static-libs
>dev-libs/mpc-1.2.1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
>dev-libs/mpfr-4.1.0_p13-r1:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
>dev-libs/nettle-3.8.1:0/8-6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec cpu_flags_x86_aes cpu_flags_x86_pclmul -cpu_flags_x86_sha -doc gmp -static-libs -verify-sig
>dev-libs/npth-1.6-r1:0 -test
>dev-libs/openssl-1.1.1q:0/1.1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpu_flags_x86_sse2 -rfc3779 -sctp -sslv3 -static-libs -test -tls-compression -tls-heartbeat -vanilla -verify-sig -verify-sig -weak-ssl-ciphers
>dev-libs/popt-1.18:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs
>dev-perl/Devel-CheckLib-1.140.0:0 -test
>dev-perl/Encode-EUCJPASCII-0.30.0-r1:0 -test
>dev-perl/Encode-HanExtra-0.230.0-r3:0
>dev-perl/Encode-Locale-1.50.0-r1:0 -test
>dev-perl/File-BaseDir-0.90.0:0 -test
>dev-perl/File-DesktopEntry-0.220.0-r1:0 -test
>dev-perl/File-Listing-6.150.0:0 -test -test
>dev-perl/File-MimeInfo-0.300.0:0 -test
>dev-perl/HTML-Parser-3.760.0:0 -test
>dev-perl/HTML-Tagset-3.200.0-r2:0
>dev-perl/HTTP-Cookies-6.100.0:0 -test
>dev-perl/HTTP-Date-6.50.0:0
>dev-perl/HTTP-Message-6.330.0:0 -test -test
>dev-perl/HTTP-Negotiate-6.10.0-r2:0 -test
>dev-perl/IO-HTML-1.4.0:0 -test
>dev-perl/IO-Socket-INET6-2.720.0-r2:0 -test
>dev-perl/IO-Socket-SSL-2.74.0:0 -examples -idn -test
>dev-perl/IPC-System-Simple-1.300.0:0 -test
>dev-perl/libwww-perl-6.600.0-r1:0 ssl -test
>dev-perl/Locale-gettext-1.70.0-r1:0 -test
>dev-perl/LWP-MediaTypes-6.40.0:0 -test
>dev-perl/LWP-Protocol-https-6.100.0:0 -test
>dev-perl/MIME-Charset-1.12.2-r1:0 l10n_ja l10n_zh -test
>dev-perl/Module-Build-0.423.100:0 -test
>dev-perl/Mozilla-CA-20999999-r1:0 -test
>dev-perl/Net-HTTP-6.210.0:0 -minimal -test
>dev-perl/Net-SSLeay-1.920.0:0 -examples -examples -minimal -test
>dev-perl/Pod-Parser-1.630.0-r1:0 -test
>dev-perl/SGMLSpm-1.1-r2:0 -test
>dev-perl/Socket6-0.290.0:0 -test
>dev-perl/Sub-Name-0.260.0:0 -suggested -test
>dev-perl/TermReadKey-2.380.0:0 -examples -test
>dev-perl/Text-CharWidth-0.40.0-r2:0 -test
>dev-perl/Text-WrapI18N-0.60.0-r2:0 -test
>dev-perl/TimeDate-2.330.0-r1:0 -test
>dev-perl/Try-Tiny-0.310.0:0 -minimal -test
>dev-perl/Unicode-LineBreak-2019.1.0:0
>dev-perl/URI-5.110.0:0 -test
>dev-perl/WWW-RobotRules-6.20.0-r2:0 -test
>dev-perl/XML-Parser-2.460.0-r2:0
>dev-perl/YAML-Tiny-1.730.0-r1:0 -minimal -test
>dev-python/appdirs-1.4.4-r2:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
>dev-python/certifi-3021.3.16-r2:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/charset_normalizer-2.1.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/flit_core-3.7.1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/gpep517-9:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/idna-3.3-r1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/importlib_metadata-4.12.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/importlib_resources-5.9.0:0 python_targets_pypy3 python_targets_python3_8 -test
>dev-python/installer-0.5.1-r1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/jaraco-context-4.1.2:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/jaraco-functools-3.5.1:0 -doc python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/jaraco-text-3.8.1:0 -doc python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/jinja-3.1.2:0 -doc -examples python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/markupsafe-2.1.1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/more-itertools-8.13.0:0 -doc python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/nspektr-0.4.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/ordered-set-4.1.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/packaging-21.3-r2:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/pyparsing-3.0.9:0 -examples python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/pypy3-7.3.9_p3:0/pypy39-pp73-336 bzip2 gdbm jit ncurses -sqlite -test -tk
>dev-python/pypy3-exe-bin-7.3.9_p3:3.9-7.3.9
>dev-python/PySocks-1.7.1-r2:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
>dev-python/requests-2.28.1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -socks5 -test
>dev-python/setuptools-63.2.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/setuptools_scm-7.0.5:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/six-1.16.0-r1:0 -doc python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/tomli-2.0.1-r1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/typing-extensions-4.3.0:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
>dev-python/urllib3-1.26.11:0 -brotli python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/wheel-0.37.1-r1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-python/zipp-3.8.1:0 python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-util/boost-build-1.79.0:0 -examples
>dev-util/checkbashisms-2.22.2:0
>dev-util/cmake-3.23.3:0 -doc -emacs ncurses -qt5 -test -test -verify-sig
>dev-util/desktop-file-utils-0.26-r2:0 -emacs
>dev-util/glib-utils-2.72.3:0 python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_8 -python_single_target_python3_9
>dev-util/gperf-3.1:0
>dev-util/gtk-doc-am-1.33.2:0
>dev-util/intltool-0.51.0-r3:0
>dev-util/meson-0.63.0:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
>dev-util/meson-format-array-0:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
>dev-util/ninja-1.11.0:0 -doc -emacs -test -vim-syntax
>dev-util/pkgconf-1.8.0-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -test
>dev-util/re2c-2.2:0 -debug -test
>dev-vcs/git-2.35.1:0 blksha1 -cgi curl -cvs -doc -gnome-keyring gpg -highlight iconv -mediawiki -mediawiki-experimental nls pcre -perforce -perl -ppcsha1 python_single_target_python3_10 -python_single_target_python3_8 -python_single_target_python3_9 -selinux -subversion -test threads -tk webdav -xinetd
>media-fonts/font-util-1.3.3:0
>media-fonts/liberation-fonts-2.1.3:0 -X -X -fontforge
>media-gfx/graphite2-1.3.14_p20210810-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -perl -test
>media-libs/fontconfig-2.14.0-r1:1.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs -test
>media-libs/freetype-2.12.1:2 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adobe-cff -brotli bzip2 cleartype-hinting -debug -doc -fontforge harfbuzz -infinality png -static-libs -svg -utils
>media-libs/harfbuzz-5.0.1:0/4.0.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 cairo -debug -doc -experimental glib graphite -icu introspection -test truetype
>media-libs/libpng-1.6.37-r2:0/16 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -apng -cpu_flags_arm_neon cpu_flags_x86_sse -static-libs
>net-dns/libidn2-2.3.3:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig
>net-firewall/iptables-1.8.8-r4:0/1.8.3 -conntrack -netlink -nftables -pcap split-usr -static-libs
>net-libs/gnutls-3.7.7:0/30.30 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -brotli cxx -dane -doc -examples -guile idn nls openssl -pkcs11 seccomp -sslv2 -sslv3 -static-libs -test -test-full tls-heartbeat -tools -valgrind -verify-sig zlib -zstd
>net-libs/libmnl-1.0.5:0/0.2.0 -examples -verify-sig
>net-libs/libnsl-2.0.0-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
>net-libs/libtirpc-1.3.2-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 ipv6 -kerberos split-usr -static-libs
>net-libs/nghttp2-1.48.0:0/1.14 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx -debug -hpack-tools -jemalloc -static-libs -test threads -utils -xml
>net-misc/curl-7.84.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -adns -alt-svc -brotli -curl_ssl_gnutls -curl_ssl_mbedtls -curl_ssl_nss curl_ssl_openssl ftp -gnutls -gopher -hsts http2 -idn imap ipv6 -kerberos -ldap -mbedtls -nghttp3 -nss openssl pop3 progress-meter -quiche -rtmp -samba smtp -ssh ssl -sslv3 -static-libs -telnet -test tftp -threads -verify-sig -zstd
>net-misc/dhcpcd-9.4.1:0 -debug embedded ipv6 -privsep udev
>net-misc/iputils-20211215:0 arping -caps -clockdiff -doc filecaps -idn nls -rarpd -rdisc -static -test -tracepath
>net-misc/netifrc-0.7.3-r1:0 dhcp
>net-misc/openssh-9.0_p1-r2:0 -X -X509 -abi_mips_n32 -audit -debug -hpn -kerberos -ldns -libedit -livecd pam pie -sctp -security-key -selinux ssl -static -test -verify-sig -xmss
>net-misc/rsync-3.2.4-r3:0 acl -examples iconv ipv6 -lz4 python_single_target_python3_10 -python_single_target_python3_8 -python_single_target_python3_9 ssl -stunnel -system-zlib -verify-sig xattr -xxhash -zstd
>net-misc/wget-1.21.3-r1:0 -cookie-check -debug -gnutls -idn ipv6 -metalink nls -ntlm pcre ssl -static -test -uuid -verify-sig zlib
>perl-core/Compress-Raw-Zlib-2.202.0:0
>perl-core/File-Temp-0.231.100:0
>sec-keys/openpgp-keys-gentoo-release-20220101:0 -test
>sys-apps/acl-2.3.1-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls split-usr -static-libs
>sys-apps/attr-2.5.1-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls split-usr -static-libs
>sys-apps/baselayout-2.8-r2:0 -build split-usr
>sys-apps/coreutils-9.1-r1:0 acl -caps -gmp -hostname -kill -multicall nls -selinux split-usr -static -test -vanilla -verify-sig xattr
>sys-apps/dbus-1.14.0-r4:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc elogind -selinux -static-libs -systemd -test -test
>sys-apps/debianutils-5.7:0 installkernel -static
>sys-apps/diffutils-3.8:0 nls -static -verify-sig
>sys-apps/file-5.42:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -seccomp -static-libs -verify-sig zlib
>sys-apps/findutils-4.9.0:0 nls -selinux -static -test -verify-sig
>sys-apps/gawk-5.1.1-r2:0 -mpfr nls readline -verify-sig
>sys-apps/gentoo-functions-0.16:0
>sys-apps/grep-3.7:0 nls pcre -static -verify-sig
>sys-apps/groff-1.22.4:0 -X -examples -uchardet
>sys-apps/help2man-1.48.5:0 nls
>sys-apps/hwdata-0.361:0
>sys-apps/hwloc-2.8.0:0/15 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cairo cpuid -cuda -debug -nvml pci -static-libs -svg -udev -video_cards_nvidia -xml
>sys-apps/install-xattr-0.8:0
>sys-apps/iproute2-5.18.0-r1:0 -atm -berkdb -bpf -caps -elf iptables -libbsd -minimal -nfs -selinux split-usr
>sys-apps/kbd-2.5.1:0 nls pam -test
>sys-apps/kmod-30:0 -debug -doc lzma -pkcs7 -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs tools zlib zstd
>sys-apps/less-590:0 pcre unicode
>sys-apps/man-db-2.10.2-r1:0 manpager nls seccomp -selinux -static-libs zlib
>sys-apps/man-pages-5.13:0 l10n_de l10n_es l10n_fr l10n_it l10n_ja l10n_nl l10n_pl l10n_pt-BR l10n_ro l10n_ru l10n_zh-CN
>sys-apps/man-pages-posix-2017a:0
>sys-apps/miscfiles-1.5-r4:0 -minimal
>sys-apps/net-tools-2.10:0 arp hostname ipv6 -nis nls -plipconfig -selinux -slattach -static
>sys-apps/openrc-0.45.2:0 -audit -bash -debug ncurses netifrc -newnet pam -selinux -sysv-utils unicode
>sys-apps/pciutils-3.8.0-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dns kmod -static-libs udev zlib
>sys-apps/portage-3.0.34:0 -apidoc -build -doc -gentoo-dev ipc native-extensions python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 rsync-verify -selinux -test xattr
>sys-apps/sandbox-2.29:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 nnp
>sys-apps/sed-4.8:0 acl nls -selinux -static -verify-sig
>sys-apps/shadow-4.11.1:0/4 acl -audit -bcrypt -cracklib nls pam -selinux -skey split-usr -su xattr
>sys-apps/systemd-utils-251.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -boot kmod -selinux split-usr -sysusers -test tmpfiles udev
>sys-apps/sysvinit-3.04:0 -ibm nls -selinux -static -verify-sig
>sys-apps/texinfo-6.8:0 nls standalone -static
>sys-apps/util-linux-2.38:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -build -caps cramfs -cryptsetup -fdformat hardlink -kill logger -magic ncurses nls pam -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 readline -rtas -selinux -slang split-usr -static-libs su suid -systemd -test -tty-helpers -udev unicode -verify-sig
>sys-apps/which-2.21:0
>sys-auth/elogind-246.10-r2:0 acl -audit cgroup-hybrid -debug -doc pam policykit -selinux -test
>sys-auth/pambase-20220214:0 -caps -debug elogind -gnome-keyring -homed -minimal -mktemp nullok -pam_krb5 -pam_ssh passwdqc -pwhistory -pwquality -securetty -selinux sha512 -systemd -yescrypt
>sys-auth/passwdqc-2.0.2-r1:0
>sys-auth/polkit-121:0 duktape -examples -gtk introspection -kde pam -selinux -systemd -test
>sys-cluster/openmpi-4.1.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cma -cuda -cxx fortran ipv6 -java -java -libompitrace -openmpi_fabrics_knem -openmpi_fabrics_ofed -openmpi_ofed_features_control-hdr-padding -openmpi_ofed_features_dynamic-sl -openmpi_ofed_features_rdmacm -openmpi_ofed_features_udcm -openmpi_rm_pbs -openmpi_rm_slurm -peruse -romio
>sys-devel/autoconf-2.71-r1:2.71 -emacs
>sys-devel/autoconf-archive-2022.02.11:0
>sys-devel/autoconf-wrapper-20220130:0
>sys-devel/automake-1.16.5:1.16 -test
>sys-devel/automake-wrapper-11-r1:0
>sys-devel/binutils-2.38-r2:2.38 -cet -default-gold -doc gold -multitarget nls -pgo plugins -static-libs -test -vanilla
>sys-devel/binutils-config-5.4.1:0 native-symlinks
>sys-devel/bison-3.8.2:0 -examples nls -static -test -verify-sig
>sys-devel/flex-2.6.4-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static -test
>sys-devel/gcc-12.1.1_p20220625:12 -ada -cet -custom-cflags cxx -d -debug -doc -fixed-point fortran -go graphite -hardened -jit -libssp lto multilib nls nptl -objc -objc++ -objc-gc openmp -pch -pgo pie sanitize ssp -systemtap -test -valgrind -vanilla -vtv -zstd
>sys-devel/gcc-config-2.5-r1:0 cc-wrappers native-symlinks
>sys-devel/gettext-0.21-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -cvs cxx -doc -emacs -git -java -java ncurses nls openmp -static-libs -verify-sig
>sys-devel/gnuconfig-20220508:0
>sys-devel/libtool-2.4.7:2 -vanilla
>sys-devel/m4-1.4.19:0 -examples nls -verify-sig
>sys-devel/make-4.3:0 -guile nls -static -verify-sig
>sys-devel/patch-2.7.6-r4:0 -static -test -verify-sig xattr
>sys-fs/e2fsprogs-1.46.5-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse -lto nls split-usr -static-libs -test threads tools
>sys-fs/udev-init-scripts-35:0
>sys-kernel/installkernel-gentoo-5:0 -grub
>sys-kernel/linux-headers-5.18-r1:0 -experimental-loong -headers-only
>sys-libs/binutils-libs-2.38-r2:0/2.38 -64-bit-bfd -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cet -multitarget nls -static-libs
>sys-libs/gdbm-1.23:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs -verify-sig
>sys-libs/glibc-2.35-r8:2.2 -audit -caps -cet clone3 -compile-locales -crypt -custom-cflags -doc -experimental-loong -gd -headers-only multiarch multilib -multilib-bootstrap -nscd -profile -selinux ssp stack-realign static-libs -suid -systemd -systemtap -test -vanilla
>sys-libs/libcap-2.65:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam split-usr -static-libs -tools
>sys-libs/libseccomp-2.5.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -experimental-loong -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs -test
>sys-libs/libxcrypt-4.4.28-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 compat split-usr -static-libs system -test
>sys-libs/ncurses-6.3_p20220423-r1:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx -debug -doc -gpm -minimal -profile split-usr stack-realign -static-libs -test tinfo -trace -verify-sig
>sys-libs/pam-1.5.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug filecaps -nis -selinux
>sys-libs/readline-8.1_p2:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static-libs unicode -utils -verify-sig
>sys-libs/timezone-data-2022a:0 -leaps-timezone nls -zic-slim
>sys-libs/zlib-1.2.12-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs -verify-sig
>sys-process/procps-3.3.17-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode
>sys-process/psmisc-23.4-r1:0 -X ipv6 nls -selinux
>virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
>virtual/awk-1:0
>virtual/dev-manager-0-r2:0
>virtual/editor-0-r3:0
>virtual/fortran-0-r1:0 openmp
>virtual/libc-1-r1:0
>virtual/libcrypt-2:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
>virtual/libelf-3-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
>virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
>virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
>virtual/libudev-232-r7:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd
>virtual/man-0-r4:0
>virtual/os-headers-0-r2:0
>virtual/package-manager-1:0
>virtual/pager-0-r1:0
>virtual/perl-Carp-1.520.0-r2:0
>virtual/perl-Compress-Raw-Bzip2-2.103.0-r2:0
>virtual/perl-Compress-Raw-Zlib-2.202.0:0
>virtual/perl-CPAN-2.330.0:0
>virtual/perl-CPAN-Meta-2.150.10-r6:0
>virtual/perl-CPAN-Meta-Requirements-2.140.0-r8:0
>virtual/perl-CPAN-Meta-YAML-0.18.0-r8:0
>virtual/perl-Data-Dumper-2.184.0:0
>virtual/perl-Digest-MD5-2.580.0-r1:0
>virtual/perl-Encode-3.170.0:0
>virtual/perl-Exporter-5.770.0:0
>virtual/perl-ExtUtils-CBuilder-0.280.236-r1:0
>virtual/perl-ExtUtils-Install-2.200.0-r1:0
>virtual/perl-ExtUtils-MakeMaker-7.640.0:0
>virtual/perl-ExtUtils-Manifest-1.730.0-r1:0
>virtual/perl-ExtUtils-ParseXS-3.450.0:0
>virtual/perl-File-Path-2.180.0-r1:0
>virtual/perl-File-Spec-3.840.0:0
>virtual/perl-File-Temp-0.231.100:0
>virtual/perl-Getopt-Long-2.520.0-r1:0
>virtual/perl-IO-1.500.0:0
>virtual/perl-IO-Compress-2.106.0:0
>virtual/perl-IO-Socket-IP-0.410.0-r1:0
>virtual/perl-JSON-PP-4.70.0:0
>virtual/perl-libnet-3.140.0:0 ssl
>virtual/perl-MIME-Base64-3.160.0-r1:0
>virtual/perl-Module-Metadata-1.0.37-r2:0
>virtual/perl-parent-0.238.0-r2:0
>virtual/perl-Parse-CPAN-Meta-2.150.10-r6:0
>virtual/perl-Perl-OSType-1.10.0-r6:0
>virtual/perl-podlators-4.140.0-r3:0
>virtual/perl-Scalar-List-Utils-1.620.0:0
>virtual/perl-Test-Harness-3.440.0:0
>virtual/perl-Text-ParseWords-3.310.0:0
>virtual/perl-Time-Local-1.300.0-r1:0
>virtual/perl-version-0.992.900:0
>virtual/perl-XSLoader-0.310.0:0
>virtual/pkgconfig-2-r1:0
>virtual/service-manager-1:0
>virtual/ssh-0-r1:0 -minimal
>virtual/tmpfiles-0-r3:0
>virtual/ttf-fonts-1-r1:0
>virtual/udev-217-r5:0
>virtual/w3m-1:0
>virtual/yacc-0:0
>www-client/pybugz-0.13-r2:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
>www-client/w3m-0.5.3_p20220429:0 -X -fbcon -gdk-pixbuf -gpm -imlib l10n_ja -lynxkeymap nls -nntp ssl unicode -xface
>x11-apps/xprop-1.2.5:0
>x11-apps/xset-1.2.4-r1:0
>x11-base/xcb-proto-1.15.2:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
>x11-base/xorg-proto-2022.1:0 -test
>x11-libs/cairo-1.16.0-r5:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug -gles2-only glib -opengl -static-libs svg -utils -valgrind
>x11-libs/libICE-1.0.10-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 ipv6
>x11-libs/libpciaccess-0.16-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 zlib
>x11-libs/libSM-1.2.3-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc ipv6 uuid
>x11-libs/libX11-1.8.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test
>x11-libs/libXau-1.0.9-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc
>x11-libs/libxcb-1.15-r1:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb
>x11-libs/libXdmcp-1.1.3-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc
>x11-libs/libXext-1.3.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc
>x11-libs/libXmu-1.1.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc ipv6
>x11-libs/libXt-1.2.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test
>x11-libs/pixman-0.40.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test
>x11-libs/xtrans-1.4.0:0 -doc
>x11-misc/compose-tables-1.8.1:0
>x11-misc/shared-mime-info-2.2:0 -test
>x11-misc/util-macros-1.19.3:0
>x11-misc/xdg-utils-1.1.3_p20210805:0 -dbus -doc -gnome
>
>
>#######################
># build.log           #
>#######################
>>>> Unpacking source...
>>>> Unpacking abyss-2.3.4.tar.gz to /var/tmp/portage/sci-biology/abyss-2.3.4/work
>>>> Source unpacked in /var/tmp/portage/sci-biology/abyss-2.3.4/work
>>>> Preparing source in /var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4 ...
> * Running eautoreconf in '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4' ...
> * Running 'aclocal --system-acdir=/var/tmp/portage/sci-biology/abyss-2.3.4/temp/aclocal' ...
> [ ok ]
> * Running 'autoconf --force' ...
> [ ok ]
> * Running 'autoheader' ...
> [ ok ]
> * Running 'automake --add-missing --copy --foreign --force-missing' ...
> [ ok ]
> * Running elibtoolize in: abyss-2.3.4/
>>>> Source prepared.
>>>> Configuring source in /var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4 ...
> * econf: updating abyss-2.3.4/config.sub with /usr/share/gnuconfig/config.sub
> * econf: updating abyss-2.3.4/config.guess with /usr/share/gnuconfig/config.guess
>./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/abyss-2.3.4 --htmldir=/usr/share/doc/abyss-2.3.4/html --libdir=/usr/lib64 --enable-openmp --enable-maxk=256
>checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
>checking whether the C++ compiler works... yes
>checking for C++ compiler default output file name... a.out
>checking for suffix of executables... 
>checking whether we are cross compiling... no
>checking for suffix of object files... o
>checking whether the compiler supports GNU C++... yes
>checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
>checking for x86_64-pc-linux-gnu-g++ option to enable C++11 features... none needed
>checking whether x86_64-pc-linux-gnu-g++ supports C++11 features with -std=c++11... yes
>checking for a BSD-compatible install... /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c
>checking whether build environment is sane... yes
>checking for a race-free mkdir -p... /bin/mkdir -p
>checking for gawk... gawk
>checking whether make sets $(MAKE)... yes
>checking whether make supports the include directive... yes (GNU style)
>checking whether make supports nested variables... yes
>checking whether UID '250' is supported by ustar format... yes
>checking whether GID '250' is supported by ustar format... yes
>checking how to create a ustar tar archive... gnutar
>checking dependency style of x86_64-pc-linux-gnu-g++ -std=c++11... none
>checking for gawk... (cached) gawk
>checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
>checking whether the compiler supports GNU C... yes
>checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
>checking for x86_64-pc-linux-gnu-gcc option to enable C11 features... none needed
>checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes
>checking dependency style of x86_64-pc-linux-gnu-gcc... none
>checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
>checking whether the compiler supports GNU C++... (cached) yes
>checking whether x86_64-pc-linux-gnu-g++ -std=c++11 accepts -g... (cached) yes
>checking for x86_64-pc-linux-gnu-g++ -std=c++11 option to enable C++11 features... (cached) none needed
>checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
>checking for x86_64-pc-linux-gnu-ghc... no
>checking for ghc... (cached) no
>./configure: line 7029: : command not found
>checking for pandoc... no
>checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
>checking the archiver (x86_64-pc-linux-gnu-ar) interface... ar
>checking for stdio.h... yes
>checking for stdlib.h... yes
>checking for string.h... yes
>checking for inttypes.h... yes
>checking for stdint.h... yes
>checking for strings.h... yes
>checking for sys/stat.h... yes
>checking for sys/types.h... yes
>checking for unistd.h... yes
>checking for vfork.h... no
>checking for dlfcn.h... yes
>checking for fcntl.h... yes
>checking for float.h... yes
>checking for limits.h... yes
>checking for stddef.h... yes
>checking for stdint.h... (cached) yes
>checking for stdlib.h... (cached) yes
>checking for sys/param.h... yes
>checking for _Bool... yes
>checking for stdbool.h that conforms to C99... yes
>checking whether byte ordering is bigendian... no
>checking for an ANSI C-conforming const... yes
>checking for inline... inline
>checking for ptrdiff_t... yes
>checking for mode_t... yes
>checking for pid_t... yes
>checking for size_t... yes
>checking for ssize_t... yes
>checking for int64_t... yes
>checking for uint8_t... yes
>checking for uint16_t... yes
>checking for uint32_t... yes
>checking for uint64_t... yes
>checking for std::hash<int>... yes
>checking for std::tr1::hash<int>... yes
>checking for std::tr1::tuple<int>... yes
>checking for dup2... yes
>checking for gethostname... yes
>checking for getopt_long... yes
>checking for getpagesize... yes
>checking for memset... yes
>checking for strdup... yes
>checking for strerror... yes
>checking for strtoul... yes
>checking for fork... yes
>checking for vfork... yes
>checking for vprintf... yes
>checking for working fork... yes
>checking for working vfork... (cached) yes
>checking build system type... x86_64-pc-linux-gnu
>checking host system type... x86_64-pc-linux-gnu
>checking for GNU libc compatible malloc... yes
>checking for working memcmp... yes
>checking for GNU libc compatible realloc... yes
>checking for x86_64-pc-linux-gnu-gcc options needed to detect all undeclared functions... none needed
>checking whether HOST_NAME_MAX is declared... yes
>checking if compiler needs -Werror to reject unknown flags... no
>checking for the pthreads library -lpthreads... no
>checking whether pthreads work without any flags... yes
>checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
>checking if more special flags are required for pthreads... no
>checking for PTHREAD_PRIO_INHERIT... yes
>checking for mpi.h... yes
>checking for MPI_Init in -lmpi... yes
>checking for sqrt in -lm... yes
>checking for pow... yes
>checking for sqrt... yes
>checking for ceilf... yes
>checking for dlsym in -ldl... yes
>checking for functional... yes
>checking for tr1/functional... yes
>checking for boost/functional/hash.hpp... yes
>checking for boost/property_map/property_map.hpp... yes
>checking for google/sparse_hash_map... yes
>checking for unordered_map... yes
>checking for tr1/unordered_map... yes
>checking for unordered_set... yes
>checking for tr1/unordered_set... yes
>checking for boost/unordered_set.hpp... yes
>checking for sqlite3.h... yes
>checking for main in -lsqlite3... yes
>checking for x86_64-pc-linux-gnu-g++ -std=c++11 option to support OpenMP... -fopenmp
>checking that generated files are newer than configure... done
>configure: creating ./config.status
>config.status: creating Makefile
>config.status: creating ABYSS/Makefile
>config.status: creating Align/Makefile
>config.status: creating Assembly/Makefile
>config.status: creating Common/Makefile
>config.status: creating DataLayer/Makefile
>config.status: creating FMIndex/Makefile
>config.status: creating Graph/Makefile
>config.status: creating Parallel/Makefile
>config.status: creating bin/Makefile
>config.status: creating doc/Makefile
>config.status: creating dialign/Makefile
>config.status: creating kmerprint/Makefile
>config.status: creating AdjList/Makefile
>config.status: creating Konnector/Makefile
>config.status: creating DAssembler/Makefile
>config.status: creating DistanceEst/Makefile
>config.status: creating Layout/Makefile
>config.status: creating Map/Makefile
>config.status: creating Overlap/Makefile
>config.status: creating PopBubbles/Makefile
>config.status: creating Scaffold/Makefile
>config.status: creating SimpleGraph/Makefile
>config.status: creating MergePaths/Makefile
>config.status: creating KAligner/Makefile
>config.status: creating PairedDBG/Makefile
>config.status: creating ParseAligns/Makefile
>config.status: creating PathOverlap/Makefile
>config.status: creating Consensus/Makefile
>config.status: creating FilterGraph/Makefile
>config.status: creating GapFiller/Makefile
>config.status: creating Sealer/Makefile
>config.status: creating vendor/gtest-1.7.0/Makefile
>config.status: creating RResolver/Makefile
>config.status: creating Unittest/Makefile
>config.status: creating LogKmerCount/Makefile
>config.status: creating Bloom/Makefile
>config.status: creating BloomDBG/Makefile
>config.status: creating DataBase/Makefile
>config.status: creating vendor/Makefile
>config.status: creating config.h
>config.status: executing depfiles commands
>>>> Source configured.
>>>> Compiling source in /var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4 ...
>make -j16 
>make  all-recursive
>make[1]: Entering directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4'
>Making all in bin
>make[2]: Entering directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/bin'
>make[2]: Nothing to be done for 'all'.
>make[2]: Leaving directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/bin'
>Making all in doc
>make[2]: Entering directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/doc'
>make[2]: Nothing to be done for 'all'.
>make[2]: Leaving directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/doc'
>Making all in Common
>make[2]: Entering directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/Common'
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libcommon_a-ContigID.o `test -f 'ContigID.cpp' || echo './'`ContigID.cpp
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libcommon_a-Fcontrol.o `test -f 'Fcontrol.cpp' || echo './'`Fcontrol.cpp
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libcommon_a-Histogram.o `test -f 'Histogram.cpp' || echo './'`Histogram.cpp
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libcommon_a-Kmer.o `test -f 'Kmer.cpp' || echo './'`Kmer.cpp
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libcommon_a-Log.o `test -f 'Log.cpp' || echo './'`Log.cpp
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libcommon_a-Options.o `test -f 'Options.cpp' || echo './'`Options.cpp
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libcommon_a-Sequence.o `test -f 'Sequence.cpp' || echo './'`Sequence.cpp
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libcommon_a-SignalHandler.o `test -f 'SignalHandler.cpp' || echo './'`SignalHandler.cpp
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libcommon_a-Timer.o `test -f 'Timer.cpp' || echo './'`Timer.cpp
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libcommon_a-Uncompress.o `test -f 'Uncompress.cpp' || echo './'`Uncompress.cpp
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libcommon_a-city.o `test -f 'city.cc' || echo './'`city.cc
>rm -f libcommon.a
>x86_64-pc-linux-gnu-ar cru libcommon.a libcommon_a-ContigID.o libcommon_a-Fcontrol.o libcommon_a-Histogram.o libcommon_a-Kmer.o libcommon_a-Log.o libcommon_a-Options.o libcommon_a-Sequence.o libcommon_a-SignalHandler.o libcommon_a-Timer.o libcommon_a-Uncompress.o libcommon_a-city.o 
>x86_64-pc-linux-gnu-ranlib libcommon.a
>make[2]: Leaving directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/Common'
>Making all in Graph
>make[2]: Entering directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/Graph'
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I../Common -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o abyss_gc-gc.o `test -f 'gc.cc' || echo './'`gc.cc
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I../Common -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o abyss_todot-todot.o `test -f 'todot.cc' || echo './'`todot.cc
>In file included from ../Graph/ContigGraphAlgorithms.h:7,
>                 from todot.cc:8:
>../Common/Functional.h:8:20: warning: â-Wdeprecated-declarations][]]
>    8 | struct True : std::unary_function<Arg, bool> {
>      |                    ^~~~~~~~~~~~~~
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/include/g++-v12/functional:49,
>                 from ../Common/Hash.h:10,
>                 from ../Common/ConstString.h:4,
>                 from ../Common/ContigID.h:4,
>                 from ContigGraph.h:4,
>                 from todot.cc:4:
>/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/include/g++-v12/bits/stl_function.h:117:12: note: declared here
>  117 |     struct unary_function
>      |            ^~~~~~~~~~~~~~
>../Common/Functional.h:14:22: warning: â-Wdeprecated-declarations][]]
>   14 | struct MemVar : std::unary_function<Arg, Result>
>      |                      ^~~~~~~~~~~~~~
>/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/include/g++-v12/bits/stl_function.h:117:12: note: declared here
>  117 |     struct unary_function
>      |            ^~~~~~~~~~~~~~
>../Common/Functional.h:31:29: warning: â-Wdeprecated-declarations][]]
>   31 | struct unary_compose : std::unary_function <
>      |                             ^~~~~~~~~~~~~~
>/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/include/g++-v12/bits/stl_function.h:117:12: note: declared here
>  117 |     struct unary_function
>      |            ^~~~~~~~~~~~~~
>../Common/Functional.h:54:30: warning: â-Wdeprecated-declarations][]]
>   54 | struct binary_compose : std::unary_function <
>      |                              ^~~~~~~~~~~~~~
>/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/include/g++-v12/bits/stl_function.h:117:12: note: declared here
>  117 |     struct unary_function
>      |            ^~~~~~~~~~~~~~
>../Graph/ContigGraphAlgorithms.h:21:28: warning: â-Wdeprecated-declarations][]]
>   21 | struct IsPalindrome : std::unary_function<typename graph_traits<Graph>::edge_descriptor, bool>
>      |                            ^~~~~~~~~~~~~~
>/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/include/g++-v12/bits/stl_function.h:117:12: note: declared here
>  117 |     struct unary_function
>      |            ^~~~~~~~~~~~~~
>../Graph/ContigGraphAlgorithms.h:226:26: warning: â-Wdeprecated-declarations][]]
>  226 | struct IsPositive : std::unary_function<typename graph_traits<Graph>::edge_descriptor, bool>
>      |                          ^~~~~~~~~~~~~~
>/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/include/g++-v12/bits/stl_function.h:117:12: note: declared here
>  117 |     struct unary_function
>      |            ^~~~~~~~~~~~~~
>../Graph/ContigGraphAlgorithms.h:287:21: warning: â-Wdeprecated-declarations][]]
>  287 | struct IsTip : std::unary_function<typename graph_traits<Graph>::vertex_descriptor, bool>
>      |                     ^~~~~~~~~~~~~~
>/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/include/g++-v12/bits/stl_function.h:117:12: note: declared here
>  117 |     struct unary_function
>      |            ^~~~~~~~~~~~~~
>x86_64-pc-linux-gnu-g++ -std=c++11 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o abyss-gc abyss_gc-gc.o ../Common/libcommon.a -ldl -lm 
>x86_64-pc-linux-gnu-g++ -std=c++11 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -L. -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o abyss-todot abyss_todot-todot.o ../Common/libcommon.a -ldl -lm 
>make[2]: Leaving directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/Graph'
>Making all in DataLayer
>make[2]: Entering directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/DataLayer'
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o abyss_fac-fac.o `test -f 'fac.cc' || echo './'`fac.cc
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libdatalayer_a-FastaReader.o `test -f 'FastaReader.cpp' || echo './'`FastaReader.cpp
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libdatalayer_a-FastaWriter.o `test -f 'FastaWriter.cpp' || echo './'`FastaWriter.cpp
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o abyss_tofastq-abyss-tofastq.o `test -f 'abyss-tofastq.cc' || echo './'`abyss-tofastq.cc
>rm -f libdatalayer.a
>x86_64-pc-linux-gnu-ar cru libdatalayer.a libdatalayer_a-FastaReader.o libdatalayer_a-FastaWriter.o 
>x86_64-pc-linux-gnu-ranlib libdatalayer.a
>x86_64-pc-linux-gnu-g++ -std=c++11 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o abyss-tofastq abyss_tofastq-abyss-tofastq.o libdatalayer.a ../Common/libcommon.a -ldl -lm 
>x86_64-pc-linux-gnu-g++ -std=c++11 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o abyss-fac abyss_fac-fac.o libdatalayer.a ../Common/libcommon.a -ldl -lm 
>make[2]: Leaving directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/DataLayer'
>Making all in DataBase
>make[2]: Entering directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/DataBase'
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o abyss_db_csv-DB.o `test -f 'DB.cc' || echo './'`DB.cc
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o abyss_db_csv-db-csv.o `test -f 'db-csv.cc' || echo './'`db-csv.cc
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libdb_a-DB.o `test -f 'DB.cc' || echo './'`DB.cc
>x86_64-pc-linux-gnu-g++ -std=c++11 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o abyss-db-csv abyss_db_csv-DB.o abyss_db_csv-db-csv.o -lsqlite3 -ldl -lm 
>rm -f libdb.a
>x86_64-pc-linux-gnu-ar cru libdb.a libdb_a-DB.o ../Common/libcommon.a
>x86_64-pc-linux-gnu-ranlib libdb.a
>make[2]: Leaving directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/DataBase'
>Making all in FMIndex
>make[2]: Entering directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/FMIndex'
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I../Common -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o abyss_count-count.o `test -f 'count.cc' || echo './'`count.cc
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I../Common -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libfmindex_a-bit_array.o `test -f 'bit_array.cc' || echo './'`bit_array.cc
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I../Common -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o abyss_dawg-abyss-dawg.o `test -f 'abyss-dawg.cc' || echo './'`abyss-dawg.cc
>rm -f libfmindex.a
>x86_64-pc-linux-gnu-ar cru libfmindex.a libfmindex_a-bit_array.o 
>x86_64-pc-linux-gnu-ranlib libfmindex.a
>x86_64-pc-linux-gnu-g++ -std=c++11 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o abyss-dawg abyss_dawg-abyss-dawg.o libfmindex.a ../Common/libcommon.a -ldl -lm 
>x86_64-pc-linux-gnu-g++ -std=c++11 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o abyss-count abyss_count-count.o libfmindex.a ../Common/libcommon.a -ldl -lm 
>make[2]: Leaving directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/FMIndex'
>Making all in Assembly
>make[2]: Entering directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/Assembly'
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libassembly_a-AssemblyAlgorithms.o `test -f 'AssemblyAlgorithms.cc' || echo './'`AssemblyAlgorithms.cc
>x86_64-pc-linux-gnu-g++ -std=c++11 -DHAVE_CONFIG_H -I. -I..  -I.. -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0 -Wall -Wextra  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o libassembly_a-Options.o `test -f 'Options.cc' || echo './'`Options.cc
>rm -f libassembly.a
>x86_64-pc-linux-gnu-ar cru libassembly.a libassembly_a-AssemblyAlgorithms.o libassembly_a-Options.o ../Common/libcommon.a
>x86_64-pc-linux-gnu-ranlib libassembly.a
>make[2]: Leaving directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/Assembly'
>Making all in dialign
>make[2]: Entering directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/dialign'
>x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o museq.o museq.c
>x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o alig.o alig.c
>x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o assemble.o assemble.c
>x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o diag.o diag.c
>x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o io.o io.c
>x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o orf.o orf.c
>x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o parameters.o parameters.c
>x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o prob.o prob.c
>x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4      -isystem/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/boost_1_56_0  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing -c -o translate.o translate.c
>assemble.c:40:20: warning: inline function âalign_diagâ declared but never defined
>   40 | extern inline char align_diag(struct alignment *algn, struct scr_matrix *smatrix, struct diag* dg);
>      |                    ^~~~~~~~~~
>assemble.c:37:32: warning: inline function âfind_eqcâ declared but never defined
>   37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int seqnum, int pos);
>      |                                ^~~~~~~~
>assemble.c:25:39: warning: inline function âfind_diags_guidedâ declared but never defined
>   25 | extern inline struct simple_diag_col* find_diags_guided(struct scr_matrix *smatrix,
>      |                                       ^~~~~~~~~~~~~~~~~
>assemble.c:15:20: warning: inline function âcalc_ov_weightâ declared but never defined
>   15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix,
>      |                    ^~~~~~~~~~~~~~
>assemble.c:13:20: warning: inline function âcalc_weightâ declared but never defined
>   13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix,
>      |                    ^~~~~~~~~~~
>alig.c:15:20: warning: inline function âcalc_ov_weightâ declared but never defined
>   15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col *dcol, struct scr_matrix* smatrix,
>      |                    ^~~~~~~~~~~~~~
>alig.c:13:20: warning: inline function âcalc_weightâ declared but never defined
>   13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* smatrix,
>      |                    ^~~~~~~~~~~
>io.c: In function âread_scr_matrixâ:
>io.c:270:17: warning: ignoring return value of â-Wunused-result][]]
>  270 |                 fscanf( fp, "%i", &is);
>      |                 ^~~~~~~~~~~~~~~~~~~~~~
>io.c:282:5: warning: ignoring return value of â-Wunused-result][]]
>  282 |     fscanf(fp, "%s\n", rline);
>      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
>diag.c:1456:17: warning: âreal_calc_weightâ is static but used in inline function âfind_diags_dynâ which is not static
> 1456 |                 real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn);
>      |                 ^~~~~~~~~~~~~~~~
>io.c: In function âread_diag_prob_distâ:
>io.c:371:7: warning: ignoring return value of â-Wunused-result][]]
>  371 |       fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight );
>      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>rm -f libdialign.a
>x86_64-pc-linux-gnu-ar cru libdialign.a alig.o assemble.o diag.o io.o orf.o parameters.o prob.o translate.o 
>x86_64-pc-linux-gnu-ranlib libdialign.a
>x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o dialign museq.o libdialign.a -ldl -lm 
>museq.c:58:13: error: type of â-Werror=lto-type-mismatch][]]
>   58 | extern int  simple_aligner(struct seq_col *scol, struct diag_col *dcol,
>      |             ^
>assemble.c:398:6: note: return value type mismatch
>  398 | char simple_aligner(struct seq_col *scol, struct diag_col *dcol,
>      |      ^
>assemble.c:398:6: note: type âcharâ should match type âintâ
>assemble.c:398:6: note: âsimple_alignerâ was previously declared here
>lto1: some warnings being treated as errors
>lto-wrapper: fatal error: x86_64-pc-linux-gnu-gcc returned 1 exit status
>compilation terminated.
>/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: error: lto-wrapper failed
>collect2: error: ld returned 1 exit status
>make[2]: *** [Makefile:355: dialign] Error 1
>make[2]: Leaving directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4/dialign'
>make[1]: *** [Makefile:488: all-recursive] Error 1
>make[1]: Leaving directory '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4'
>make: *** [Makefile:408: all] Error 2
> * ERROR: sci-biology/abyss-2.3.4::gentoo failed (compile phase):
> *   emake failed
> * 
> * If you need support, post the output of `emerge --info '=sci-biology/abyss-2.3.4::gentoo'`,
> * the complete build log and the output of `emerge -pqv '=sci-biology/abyss-2.3.4::gentoo'`.
> * The complete build log is located at '/var/log/emerge-log/build/sci-biology/abyss-2.3.4:20220730-032134.log'.
> * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/abyss-2.3.4/temp/build.log'.
> * The ebuild environment file is located at '/var/tmp/portage/sci-biology/abyss-2.3.4/temp/environment'.
> * Working directory: '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4'
> * S: '/var/tmp/portage/sci-biology/abyss-2.3.4/work/abyss-2.3.4'
>

Actions: View

Attachments on bug 862252: 795736