* Package: sci-libs/silo-4.11-r1 * Repository: gentoo * Maintainer: cluster@gentoo.org * USE: abi_x86_64 amd64 elibc_musl hdf5 kernel_linux silex userland_GNU * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox @@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; This ebuild was merged at the following commit: https://github.com/gentoo-mirror/gentoo/commit/00998358c20668e3d329350bce5ed7517895bf59 (Thu Apr 7 04:49:45 UTC 2022) @@@@@ END @@@@@ ################## # emerge --info: # ################## Portage 3.0.30 (python 3.10.4-final-0, default/linux/amd64/17.0/musl/hardened, gcc-11.2.1, musl-1.2.2-r8, 4.19.174-gentoo x86_64) ================================================================= System uname: Linux-4.19.174-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-libc KiB Mem: 264046488 total, 43543344 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Thu, 07 Apr 2022 04:49:40 +0000 sh bash 5.1_p16 ld GNU ld (Gentoo 2.38 p3) 2.38 app-misc/pax-utils: 1.3.3::gentoo app-shells/bash: 5.1_p16::gentoo dev-lang/perl: 5.34.1::gentoo dev-lang/python: 3.8.13::gentoo, 3.9.12::gentoo, 3.10.4::gentoo dev-util/cmake: 3.23.0::gentoo dev-util/meson: 0.61.4-r2::gentoo sys-apps/baselayout: 2.8::gentoo sys-apps/openrc: 0.44.10::gentoo sys-apps/sandbox: 2.29::gentoo sys-devel/autoconf: 2.71-r1::gentoo sys-devel/automake: 1.16.5::gentoo sys-devel/binutils: 2.38-r1::gentoo sys-devel/binutils-config: 5.4.1::gentoo sys-devel/gcc: 11.2.1_p20220115::gentoo sys-devel/gcc-config: 2.5-r1::gentoo sys-devel/libtool: 2.4.7::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.17::gentoo (virtual/os-headers) sys-libs/musl: 1.2.2-r8::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-metamanifest: yes sync-rsync-verify-jobs: 1 sync-rsync-verify-max-age: 24 sync-rsync-extra-opts: ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* BSD" CBUILD="x86_64-gentoo-linux-musl" CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" CHOST="x86_64-gentoo-linux-musl" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" DISTDIR="/var/tmp/portage/sci-libs/silo-4.11-r1/distdir" EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" INSTALL_MASK="charset.alias /usr/share/locale/locale.alias" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" MAKEOPTS="-j16" PKGDIR="/root/tbci/binpkg" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="acl amd64 bzip2 crypt elogind hardened hdf5 iconv ipv6 jumbo-build libglvnd libtirpc native-symlinks ncurses nls nptl openmp pam pcre pie readline seccomp silex split-usr ssl ssp test unicode xattr xtpax zlib" ABI_X86="64" ELIBC="musl" KERNEL="linux" USERLAND="GNU" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS ############################## # emerge history (qlop -mv): # ############################## 2022-04-07T05:32:41 >>> sys-libs/mtdev-1.1.6 2022-04-07T05:32:43 >>> sys-devel/gcc-11.2.1_p20220115 2022-04-07T05:33:05 >>> virtual/fortran-0 2022-04-07T05:33:10 >>> x11-libs/xtrans-1.4.0 2022-04-07T05:33:08 >>> x11-base/xorg-proto-2021.5 2022-04-07T05:33:12 >>> net-dialup/lrzsz-0.12.20-r4 2022-04-07T05:33:14 >>> sci-libs/hdf5-1.12.1-r1 2022-04-07T05:33:16 >>> dev-libs/libevdev-1.12.1 2022-04-07T05:33:19 >>> dev-libs/double-conversion-3.2.0 2022-04-07T05:33:25 >>> sci-libs/libaec-1.0.4 2022-04-07T05:33:21 >>> dev-libs/icu-70.1-r1 2022-04-07T05:33:23 >>> media-libs/libjpeg-turbo-2.1.3 2022-04-07T05:33:28 >>> app-text/docbook-xml-dtd-4.3-r2 2022-04-07T05:33:32 >>> dev-lang/nasm-2.15.05 2022-04-07T05:33:30 >>> x11-base/xcb-proto-1.14.1 2022-04-07T05:33:54 >>> x11-libs/libXau-1.0.9-r1 2022-04-07T05:33:57 >>> x11-libs/libXdmcp-1.1.3-r1 2022-04-07T05:33:51 >>> x11-libs/libICE-1.0.10-r1 2022-04-07T05:34:15 >>> virtual/szip-2.1 2022-04-07T05:34:19 >>> dev-qt/qtcore-5.15.3 2022-04-07T05:34:09 >>> dev-libs/libinput-1.20.0 2022-04-07T05:34:29 >>> virtual/jpeg-100-r1 2022-04-07T05:34:44 >>> x11-libs/libxcb-1.14 2022-04-07T05:34:47 >>> x11-libs/libSM-1.2.3-r1 2022-04-07T05:34:59 >>> dev-qt/qtdbus-5.15.3 2022-04-07T05:34:41 >>> x11-misc/compose-tables-1.7.5 2022-04-07T05:35:07 >>> x11-libs/gdk-pixbuf-2.42.8 2022-04-07T05:35:21 >>> x11-libs/xcb-util-wm-0.4.1-r3 2022-04-07T05:35:15 >>> x11-libs/xcb-util-renderutil-0.3.9-r3 2022-04-07T05:35:19 >>> x11-libs/xcb-util-keysyms-0.4.0-r2 2022-04-07T05:35:30 >>> x11-libs/libX11-1.7.5 2022-04-07T05:35:33 >>> x11-libs/libxkbcommon-1.4.0 2022-04-07T05:35:35 >>> dev-util/gtk-update-icon-cache-3.24.31 2022-04-07T05:35:50 >>> x11-libs/xcb-util-0.4.0-r2 2022-04-07T05:35:54 >>> x11-libs/libXext-1.3.4 2022-04-07T05:36:04 >>> x11-libs/xcb-util-image-0.4.0-r2 2022-04-07T05:36:07 >>> media-libs/libglvnd-1.4.0 2022-04-07T05:36:14 >>> x11-libs/xcb-util-cursor-0.1.3-r3 2022-04-07T05:36:21 >>> dev-qt/qtgui-5.15.3 2022-04-07T05:36:33 >>> dev-qt/qtwidgets-5.15.3 ####################################### # installed packages (qlist -ICvUSS): # ####################################### acct-group/audio-0-r1:0 acct-group/cdrom-0-r1:0 acct-group/dialout-0-r1:0 acct-group/disk-0-r1:0 acct-group/input-0-r1:0 acct-group/kmem-0-r1:0 acct-group/kvm-0-r1:0 acct-group/lp-0-r1:0 acct-group/man-0-r1:0 acct-group/messagebus-0-r1:0 acct-group/portage-0:0 acct-group/render-0-r1:0 acct-group/sgx-0:0 acct-group/sshd-0-r1:0 acct-group/tape-0-r1:0 acct-group/tty-0-r1:0 acct-group/video-0-r1:0 acct-user/man-1-r1:0 acct-user/messagebus-0-r1:0 acct-user/portage-0:0 acct-user/sshd-0-r1:0 app-admin/eselect-1.4.20:0 -doc -emacs -vim-syntax app-admin/perl-cleaner-2.30:0 app-arch/bzip2-1.0.8-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs -verify-sig app-arch/gzip-1.11:0 -pic -static -verify-sig app-arch/libarchive-3.6.0:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd app-arch/tar-1.34:0 acl -minimal nls -selinux -verify-sig xattr app-arch/unzip-6.0_p26:0 bzip2 -natspec unicode app-arch/xz-utils-5.2.5-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 extra-filters nls split-usr -static-libs -verify-sig app-arch/zstd-1.5.2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 -static-libs threads app-crypt/gnupg-2.3.4-r2:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server app-crypt/gpgme-1.17.1:1/11.6.15 -common-lisp cxx -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -qt5 -static-libs -verify-sig app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs app-crypt/libmd-1.0.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 app-crypt/pinentry-1.2.0:0 -caps -efl -emacs -gnome-keyring -gtk ncurses -qt5 app-crypt/rhash-1.4.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls ssl -static-libs app-editors/nano-6.2:0 -debug -justify -magic -minimal ncurses nls spell split-usr -static unicode app-eselect/eselect-fontconfig-20220403:0 app-eselect/eselect-iptables-20220320:0 app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0 app-eselect/eselect-pinentry-0.7.2:0 app-misc/c_rehash-1.7-r1:0 app-misc/ca-certificates-20211016.3.77:0 -cacert app-misc/editor-wrapper-4-r1:0 app-misc/mime-types-2.1.53:0 -nginx app-misc/pax-utils-1.3.3:0 -caps -debug -python -python_single_target_python3_10 -python_single_target_python3_8 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app-text/manpager-1:0 app-text/sgml-common-0.6.3-r7:0 app-text/xmlto-0.0.28-r8:0 -latex -text dev-db/sqlite-3.38.2:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools dev-lang/nasm-2.15.05:0 -doc dev-lang/perl-5.34.1:0/5.34 -berkdb -debug -doc -gdbm ithreads -minimal -quadmath dev-lang/python-3.10.4:3.10 -bluetooth -build -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml dev-lang/python-3.9.12:3.9 -bluetooth -build -examples gdbm hardened -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml dev-lang/python-3.8.13:3.8 -bluetooth -build -examples gdbm hardened ncurses readline sqlite ssl -test -tk -verify-sig -wininst xml dev-lang/python-exec-2.4.8:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test dev-lang/python-exec-conf-2.4.6:2 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 dev-lang/tcl-8.6.12:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug threads dev-libs/double-conversion-3.2.0:0/3 dev-libs/elfutils-0.186:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma nls -static-libs -test -threads utils -valgrind -zstd dev-libs/expat-2.4.8:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs unicode dev-libs/glib-2.72.0:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus -debug elf -fam -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr dev-libs/gmp-6.2.1-r2:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cxx -doc -pic -static-libs dev-libs/gobject-introspection-1.72.0:0 -doctool -gtk-doc -python_single_target_python3_10 -python_single_target_python3_8 python_single_target_python3_9 -test dev-libs/gobject-introspection-common-1.72.0:0 dev-libs/icu-70.1-r1:0/70.1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -examples -static-libs dev-libs/isl-0.24-r2:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs dev-libs/jsoncpp-1.9.5:0/25 -doc -test dev-libs/libassuan-2.5.5:0 dev-libs/libbsd-0.11.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig dev-libs/libevdev-1.12.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test dev-libs/libevent-2.1.12:0/2.1-7 -abi_mips_n32 -abi_mips_n64 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-abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 x11-libs/xcb-util-renderutil-0.3.9-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 x11-libs/xcb-util-wm-0.4.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 x11-libs/xtrans-1.4.0:0 -doc x11-misc/compose-tables-1.7.5:0 x11-misc/shared-mime-info-2.2:0 -test ####################### # build.log # ####################### * Using following Fortran compiler: * F77: x86_64-gentoo-linux-musl-gfortran * FC: x86_64-gentoo-linux-musl-gfortran >>> Unpacking source... >>> Unpacking silo-4.11-bsd.tgz to /var/tmp/portage/sci-libs/silo-4.11-r1/work >>> Source unpacked in /var/tmp/portage/sci-libs/silo-4.11-r1/work >>> Preparing source in /var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd ... * Applying silo-4.11-hdf5.patch ... [ ok ] * Applying silo-4.11-test-disable-largefile.patch ... [ ok ] * Applying silo-4.11-tests.patch ... patching file tests/Makefile.in Hunk #1 succeeded at 239 with fuzz 2 (offset 70 lines). patching file tests/testdtypes [ ok ] * Applying silo-4.11-testsuite-python-write.patch ... [ ok ] * Applying silo-4.11-widgets.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd ... * econf: updating silo-4.11-bsd/config/config.sub with /usr/share/gnuconfig/config.sub * econf: updating silo-4.11-bsd/config/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-gentoo-linux-musl --host=x86_64-gentoo-linux-musl --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-dependency-tracking --disable-silent-rules --disable-static --docdir=/usr/share/doc/silo-4.11-r1 --htmldir=/usr/share/doc/silo-4.11-r1/html --with-sysroot=/ --libdir=/usr/lib --enable-install-lite-headers --enable-shared --enable-silex --disable-browser --with-hdf5=/usr/include,/usr/lib checking for a BSD-compatible install... /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-gentoo-linux-musl checking host system type... x86_64-gentoo-linux-musl checking what version the package is... 4.11 checking for site config host file... no checking for config-site x86_64-gentoo-linux-musl... no checking for config-site x86_64-gentoo-linux-musl... no checking for config-site gentoo-linux-musl... no checking for config-site gentoo-linux-musl... no checking for config-site x86_64-linux-musl... no checking for config-site x86_64-linux-musl... no checking for config-site x86_64-gentoo... no checking for config-site linux-musl... no checking for config-site linux-musl... no checking for config-site gentoo... no checking for config-site x86_64... found checking for x86_64-gentoo-linux-musl-g++... x86_64-gentoo-linux-musl-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether x86_64-gentoo-linux-musl-g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of x86_64-gentoo-linux-musl-g++... none checking for x86_64-gentoo-linux-musl-gcc... x86_64-gentoo-linux-musl-gcc checking whether we are using the GNU C compiler... yes checking whether x86_64-gentoo-linux-musl-gcc accepts -g... yes checking for x86_64-gentoo-linux-musl-gcc option to accept ISO C89... none needed checking whether x86_64-gentoo-linux-musl-gcc understands -c and -o together... yes checking dependency style of x86_64-gentoo-linux-musl-gcc... none checking how to run the C preprocessor... x86_64-gentoo-linux-musl-gcc -E checking for x86_64-gentoo-linux-musl-gfortran... x86_64-gentoo-linux-musl-gfortran checking whether we are using the GNU Fortran compiler... yes checking whether x86_64-gentoo-linux-musl-gfortran accepts -g... yes checking for x86_64-gentoo-linux-musl-g77... x86_64-gentoo-linux-musl-gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether x86_64-gentoo-linux-musl-gfortran accepts -g... yes checking how to get verbose linking output from x86_64-gentoo-linux-musl-gfortran... -v checking for Fortran libraries of x86_64-gentoo-linux-musl-gfortran... -L/usr/lib/gcc/x86_64-gentoo-linux-musl/11.2.1 -L/usr/lib/gcc/x86_64-gentoo-linux-musl/11.2.1/../../../../x86_64-gentoo-linux-musl/lib/../lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/11.2.1/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/11.2.1/../../../../x86_64-gentoo-linux-musl/lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/11.2.1/../../.. -lgfortran -lm -lssp_nonshared -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether make sets $(MAKE)... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-gentoo-linux-musl-gcc... /usr/x86_64-gentoo-linux-musl/bin/ld checking if the linker (/usr/x86_64-gentoo-linux-musl/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-gentoo-linux-musl-nm -B checking the name lister (/usr/bin/x86_64-gentoo-linux-musl-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 98304 checking how to convert x86_64-gentoo-linux-musl file names to x86_64-gentoo-linux-musl format... func_convert_file_noop checking how to convert x86_64-gentoo-linux-musl file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-gentoo-linux-musl/bin/ld option to reload object files... -r checking for x86_64-gentoo-linux-musl-objdump... x86_64-gentoo-linux-musl-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-gentoo-linux-musl-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-gentoo-linux-musl-ar... x86_64-gentoo-linux-musl-ar checking for archiver @FILE support... @ checking for x86_64-gentoo-linux-musl-strip... x86_64-gentoo-linux-musl-strip checking for x86_64-gentoo-linux-musl-ranlib... x86_64-gentoo-linux-musl-ranlib checking command to parse /usr/bin/x86_64-gentoo-linux-musl-nm -B output from x86_64-gentoo-linux-musl-gcc object... ok checking for sysroot... / checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-gentoo-linux-musl-mt... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-gentoo-linux-musl-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-gentoo-linux-musl-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-gentoo-linux-musl-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-gentoo-linux-musl-gcc static flag -static works... yes checking if x86_64-gentoo-linux-musl-gcc supports -c -o file.o... yes checking if x86_64-gentoo-linux-musl-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-gentoo-linux-musl-gcc linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... x86_64-gentoo-linux-musl-g++ -E checking for ld used by x86_64-gentoo-linux-musl-g++... /usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-gentoo-linux-musl-g++ linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-gentoo-linux-musl-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-gentoo-linux-musl-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-gentoo-linux-musl-g++ static flag -static works... yes checking if x86_64-gentoo-linux-musl-g++ supports -c -o file.o... yes checking if x86_64-gentoo-linux-musl-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-gentoo-linux-musl-g++ linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for x86_64-gentoo-linux-musl-gfortran option to produce PIC... -fPIC checking if x86_64-gentoo-linux-musl-gfortran PIC flag -fPIC works... yes checking if x86_64-gentoo-linux-musl-gfortran static flag -static works... yes checking if x86_64-gentoo-linux-musl-gfortran supports -c -o file.o... yes checking if x86_64-gentoo-linux-musl-gfortran supports -c -o file.o... (cached) yes checking whether the x86_64-gentoo-linux-musl-gfortran linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for x86_64-gentoo-linux-musl-gfortran option to produce PIC... -fPIC checking if x86_64-gentoo-linux-musl-gfortran PIC flag -fPIC works... yes checking if x86_64-gentoo-linux-musl-gfortran static flag -static works... yes checking if x86_64-gentoo-linux-musl-gfortran supports -c -o file.o... yes checking if x86_64-gentoo-linux-musl-gfortran supports -c -o file.o... (cached) yes checking whether the x86_64-gentoo-linux-musl-gfortran linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for library containing strerror... none required checking for hzip... hzip compression not available in BSD version checking for fpzip... fpzip compression not available in BSD version checking for zfp... found checking compiler optimization... disabled checking whether C compiler accepts "-D_LARGEFILE_SOURCE"... yes checking whether C compiler accepts "-D_LARGEFILE64_SOURCE"... yes checking whether C compiler accepts "-D_FILE_OFFSET_BITS=64"... yes checking whether C compiler accepts "-Wdeclaration-after-statement"... yes checking size of off64_t... 8 checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/stat.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/fcntl.h usability... yes checking sys/fcntl.h presence... yes checking for sys/fcntl.h... yes checking fnmatch.h usability... yes checking fnmatch.h presence... yes checking for fnmatch.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for ANSI C header files... (cached) yes checking for fclose function pointer... yes checking for fflush function pointer... yes checking for fopen function pointer... yes checking for fprintf function pointer... yes checking for fread function pointer... yes checking for fseek function pointer... yes checking for setvbuf function pointer... yes checking for ftell function pointer... yes checking for fwrite function pointer... yes checking for memmove... yes checking for fnmatch... yes checking for isnan... no checking for fpclass... no checking for strerror... yes checking if setjmp and longjmp work... yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for Qt... ./configure: line 25712: qmake: command not found no checking for cos in -lm... yes checking for szlib... suppressed checking for hdf5... configure: checking for hdf5 and supporting libraries... checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5open... yes checking for a readline compatible library... -lreadline checking readline.h usability... no checking readline.h presence... no checking for readline.h... no checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking whether readline supports history... yes checking history.h usability... no checking history.h presence... no checking for history.h... no checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating SiloWindows/Makefile config.status: creating svn_bin/Makefile config.status: creating config/Makefile config.status: creating config-site/Makefile config.status: creating docs/Makefile config.status: creating src/Makefile config.status: creating src/score/Makefile config.status: creating src/pdb/Makefile config.status: creating src/silo/Makefile config.status: creating src/silo/silo.h config.status: creating src/debug/Makefile config.status: creating src/netcdf/Makefile config.status: creating src/pdb_drv/Makefile config.status: creating src/pdbp_drv/Makefile config.status: creating src/hdf5_drv/Makefile config.status: creating src/taurus/Makefile config.status: creating src/unknown/Makefile config.status: creating src/filters/Makefile config.status: creating tests/Makefile config.status: creating tools/Makefile config.status: creating tools/browser/Makefile config.status: creating tools/python/Makefile config.status: creating tools/silex/Makefile config.status: creating tools/silock/Makefile config.status: creating tools/json/Makefile config.status: creating tools/mapred/Makefile config.status: creating src/zfp-0.5.5/Makefile config.status: creating src/libsiloh5.settings config.status: creating config.h config.status: executing tests/atconfig commands config.status: executing depfiles commands config.status: executing libtool commands SUMMARY OF THE Silo with HDF5 CONFIGURATION ================================= Silo Version: 4.11 Configured on: Thu Apr 7 05:36:45 UTC 2022 Configured by: portage@gf.packet.net Configure command: ./configure '--prefix=/usr' '--build=x86_64-gentoo-linux-musl' '--host=x86_64-gentoo-linux-musl' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--datarootdir=/usr/share' '--disable-dependency-tracking' '--disable-silent-rules' '--disable-static' '--docdir=/usr/share/doc/silo-4.11-r1' '--htmldir=/usr/share/doc/silo-4.11-r1/html' '--with-sysroot=/' '--libdir=/usr/lib' '--enable-install-lite-headers' '--enable-shared' '--enable-silex' '--disable-browser' '--with-hdf5=/usr/include,/usr/lib' 'build_alias=x86_64-gentoo-linux-musl' 'host_alias=x86_64-gentoo-linux-musl' 'CXXFLAGS=-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' 'CFLAGS=-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0' 'FC=x86_64-gentoo-linux-musl-gfortran' 'FCFLAGS=-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fallow-argument-mismatch' 'F77=x86_64-gentoo-linux-musl-gfortran' 'FFLAGS=-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fallow-argument-mismatch' Host system: x86_64-gentoo-linux-musl Build system: x86_64-gentoo-linux-musl Installation point: /usr Source directory: @UsingSrcDir@ Archiver: x86_64-gentoo-linux-musl-ar Ranlib: x86_64-gentoo-linux-musl-ranlib Configure Summary Compiling Options: C Compiler /usr/bin/x86_64-gentoo-linux-musl-gcc CPPFLAGS -I/usr/include CFLAGS -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement LDFLAGS -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 LIBS -lhdf5 -lm Languages: C++ Compiler /usr/bin/x86_64-gentoo-linux-musl-g++ CXXFLAGS -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 Fortran Compiler /usr/bin/x86_64-gentoo-linux-musl-gfortran FCFLAGS -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -fallow-argument-mismatch FCLIBS -L/usr/lib/gcc/x86_64-gentoo-linux-musl/11.2.1 -L/usr/lib/gcc/x86_64-gentoo-linux-musl/11.2.1/../../../../x86_64-gentoo-linux-musl/lib/../lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/11.2.1/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/11.2.1/../../../../x86_64-gentoo-linux-musl/lib -L/usr/lib/gcc/x86_64-gentoo-linux-musl/11.2.1/../../.. -lgfortran -lm -lssp_nonshared -lquadmath Features: Browser @UsingBrowser@ Readline @UsingReadline@ HDF5 @UsingHDF5@ Silex @UsingSilex@ Qt @UsingQt@ Qt moc Compiler Qt CXXFLAGS Qt LIBS Python @UsingPython@ Python Compiler Python CPPFLAGS >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd ... make -j16 make all-recursive make[1]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd' Making all in . make[2]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd' make[2]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd' Making all in src make[2]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src' make all-recursive make[3]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src' Making all in score make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/score' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o memmove.lo memmove.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o scctla.lo scctla.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o scctl.lo scctl.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o schash.lo schash.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o scstr.lo scstr.c if test ! -e lite_score.h; then ../../config/mklite score.h lite_score.h; fi libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c memmove.c -fPIC -DPIC -o .libs/memmove.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c schash.c -fPIC -DPIC -o .libs/schash.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c scctl.c -fPIC -DPIC -o .libs/scctl.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c scstr.c -fPIC -DPIC -o .libs/scstr.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c scctla.c -fPIC -DPIC -o .libs/scctla.o /bin/sh ../../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libsilo_score.la memmove.lo scctla.lo scctl.lo schash.lo scstr.lo -lhdf5 -lm libtool: link: x86_64-gentoo-linux-musl-ar cru .libs/libsilo_score.a .libs/memmove.o .libs/scctla.o .libs/scctl.o .libs/schash.o .libs/scstr.o libtool: link: x86_64-gentoo-linux-musl-ranlib .libs/libsilo_score.a libtool: link: ( cd ".libs" && rm -f "libsilo_score.la" && ln -s "../libsilo_score.la" "libsilo_score.la" ) make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/score' Making all in pdb make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/pdb' x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o detect.o detect.c x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -o detect detect.o ./detect >> pdform.h make all-am make[5]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/pdb' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o pdb.lo pdb.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o pdbdir.lo pdbdir.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o pdbio.lo pdbio.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o pdbmm.lo pdbmm.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o pdbx.lo pdbx.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o pdconv.lo pdconv.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o pdlow.lo pdlow.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o pdmemb.lo pdmemb.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o pdpath.lo pdpath.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o pdrdwr.lo pdrdwr.c if test ! -e lite_pdb.h; then ../../config/mklite pdb.h lite_pdb.h; fi libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c pdconv.c -fPIC -DPIC -o .libs/pdconv.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c pdbio.c -fPIC -DPIC -o .libs/pdbio.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c pdb.c -fPIC -DPIC -o .libs/pdb.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c pdpath.c -fPIC -DPIC -o .libs/pdpath.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c pdrdwr.c -fPIC -DPIC -o .libs/pdrdwr.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c pdbx.c -fPIC -DPIC -o .libs/pdbx.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c pdbmm.c -fPIC -DPIC -o .libs/pdbmm.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c pdbdir.c -fPIC -DPIC -o .libs/pdbdir.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c pdlow.c -fPIC -DPIC -o .libs/pdlow.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/score -I../../src/silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c pdmemb.c -fPIC -DPIC -o .libs/pdmemb.o pdb.c:1809:2: warning: #warning MOVE TO PDLOW.C [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1809 | #warning MOVE TO PDLOW.C | ^~~~~~~ pdb.c:1815:2: warning: #warning MOVE TO PDMEMB.C [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1815 | #warning MOVE TO PDMEMB.C | ^~~~~~~ pdb.c:1821:2: warning: #warning MOVE TO PDLOW.C [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1821 | #warning MOVE TO PDLOW.C | ^~~~~~~ pdb.c:1870:2: warning: #warning MOVE TO PDLOW.C [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1870 | #warning MOVE TO PDLOW.C | ^~~~~~~ pdb.c:1877:2: warning: #warning MOVE TO PDLOW.C [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1877 | #warning MOVE TO PDLOW.C | ^~~~~~~ pdb.c:1885:2: warning: #warning MOVE TO PDBDIR.C [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1885 | #warning MOVE TO PDBDIR.C | ^~~~~~~ pdb.c: In function 'lite_PD_ln': pdb.c:1890:2: warning: #warning MAYBE INCREASE MAXLINE FOR LEOSPACT [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1890 | #warning MAYBE INCREASE MAXLINE FOR LEOSPACT | ^~~~~~~ pdb.c: At top level: pdb.c:1965:2: warning: #warning SHOULD GO IN PDBMM.c [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1965 | #warning SHOULD GO IN PDBMM.c | ^~~~~~~ /bin/sh ../../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libsilo_pdb.la pdb.lo pdbdir.lo pdbio.lo pdbmm.lo pdbx.lo pdconv.lo pdlow.lo pdmemb.lo pdpath.lo pdrdwr.lo -lhdf5 -lm libtool: link: x86_64-gentoo-linux-musl-ar cru .libs/libsilo_pdb.a .libs/pdb.o .libs/pdbdir.o .libs/pdbio.o .libs/pdbmm.o .libs/pdbx.o .libs/pdconv.o .libs/pdlow.o .libs/pdmemb.o .libs/pdpath.o .libs/pdrdwr.o libtool: link: x86_64-gentoo-linux-musl-ranlib .libs/libsilo_pdb.a libtool: link: ( cd ".libs" && rm -f "libsilo_pdb.la" && ln -s "../libsilo_pdb.la" "libsilo_pdb.la" ) make[5]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/pdb' make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/pdb' Making all in silo make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/silo' make all-am make[5]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/silo' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o alloc.lo alloc.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o extface.lo extface.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o silo.lo silo.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o silo_ns.lo silo_ns.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o utils.lo utils.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o silo_f.lo silo_f.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c silo.c -fPIC -DPIC -o .libs/silo.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c extface.c -fPIC -DPIC -o .libs/extface.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c utils.c -fPIC -DPIC -o .libs/utils.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c silo_f.c -fPIC -DPIC -o .libs/silo_f.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c silo_ns.c -fPIC -DPIC -o .libs/silo_ns.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c alloc.c -fPIC -DPIC -o .libs/alloc.o silo.c:74:2: warning: #warning SIMPLIFY HEADER INCLUSION LOGIC [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 74 | #warning SIMPLIFY HEADER INCLUSION LOGIC | ^~~~~~~ In file included from silo.c:96: /usr/include/sys/errno.h:1:2: warning: #warning redirecting incorrect #include to [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1 | #warning redirecting incorrect #include to | ^~~~~~~ In file included from silo.c:106: /usr/include/sys/fcntl.h:1:2: warning: #warning redirecting incorrect #include to [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1 | #warning redirecting incorrect #include to | ^~~~~~~ silo.c:229:2: warning: #warning REDUCE USE OF THIS CONSTRUCT [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 229 | #warning REDUCE USE OF THIS CONSTRUCT | ^~~~~~~ silo.c:287:2: warning: #warning FIX THIS [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 287 | #warning FIX THIS | ^~~~~~~ silo.c: In function 'db_FreeToc': silo.c:1129:2: warning: #warning WE SHOULD PROBABLY JUST EITHER MAKE THIS CONSISTENT OR PERHAPS COPY ALL CHARS INTO LINK@TARGET format [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1129 | #warning WE SHOULD PROBABLY JUST EITHER MAKE THIS CONSISTENT OR PERHAPS COPY ALL CHARS INTO LINK@TARGET format | ^~~~~~~ alloc.c: In function 'DBIsEmptyQuadmesh': alloc.c:909:2: warning: #warning CHECK THIS LOGIC. IF ANY DIM>0, IT IS NOT EMPTY [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 909 | #warning CHECK THIS LOGIC. IF ANY DIM>0, IT IS NOT EMPTY | ^~~~~~~ alloc.c: In function 'DBIsEmptyQuadvar': alloc.c:1354:2: warning: #warning CHECK THIS LOGIC [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1354 | #warning CHECK THIS LOGIC | ^~~~~~~ silo.c: In function 'DBLs': silo.c:1734:2: warning: #warning CLEAN UP IS LOST IN ABOVE EARLY RETURNS [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1734 | #warning CLEAN UP IS LOST IN ABOVE EARLY RETURNS | ^~~~~~~ silo.c: At top level: silo.c:2535:2: warning: #warning WHAT ABOUT FORCESINGLE SHOWERRORS [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 2535 | #warning WHAT ABOUT FORCESINGLE SHOWERRORS | ^~~~~~~ silo.c: In function 'DBGrabDriver': silo.c:2844:2: warning: #warning FIX GLOBAL LOCK [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 2844 | #warning FIX GLOBAL LOCK | ^~~~~~~ silo.c: At top level: silo.c:3585:2: warning: #warning ADD DBSHOWERRORSFILE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 3585 | #warning ADD DBSHOWERRORSFILE | ^~~~~~~ silo.c: In function 'DBShowErrors': silo.c:3600:2: warning: #warning GET RID OF SUSPEND/RESUME STUFF [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 3600 | #warning GET RID OF SUSPEND/RESUME STUFF | ^~~~~~~ silo.c: In function 'db_InitFileGlobals': silo.c:3974:2: warning: #warning ADD compressionMinSize [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 3974 | #warning ADD compressionMinSize | ^~~~~~~ silo.c:3976:2: warning: #warning CORRECT INITIALIZATION OF compressionErrmode [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 3976 | #warning CORRECT INITIALIZATION OF compressionErrmode | ^~~~~~~ silo.c:3979:61: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdiscarded-qualifiers]] 3979 | dbfile->pub.file_scope_globals->compressionParams = DB_CHAR_PTR_NOT_SET; | ^ silo.c: In function 'DBClose': silo.c:4416:2: warning: #warning IS ORDER OF OPS CORRECT HERE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 4416 | #warning IS ORDER OF OPS CORRECT HERE | ^~~~~~~ silo.c: In function 'db_validate_copy_step': silo.c:5839:2: warning: #warning ONLY IF SRC SIZE SMALLER THAN DST SIZE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 5839 | #warning ONLY IF SRC SIZE SMALLER THAN DST SIZE | ^~~~~~~ silo.c: In function 'db_can_overwrite_dstobj_with_srcobj': silo.c:5897:9: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 5897 | char const *curr_compname = srcObj->comp_names[q]; | ^~~~ silo.c:5934:2: warning: #warning SHOULDNT WE USE FILE LENGTH FUNCTIONS HERE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 5934 | #warning SHOULDNT WE USE FILE LENGTH FUNCTIONS HERE | ^~~~~~~ silo.c:5944:2: warning: #warning DISALLOW SIMLINKS FOR NOW [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 5944 | #warning DISALLOW SIMLINKS FOR NOW | ^~~~~~~ silo.c: In function 'db_copy_single_object_abspath': silo.c:6010:2: warning: #warning CHECK ARGS HERE. ALLOW FOR NULL dstFile AND dstObjAbsName [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 6010 | #warning CHECK ARGS HERE. ALLOW FOR NULL dstFile AND dstObjAbsName | ^~~~~~~ silo.c:6011:2: warning: #warning WHY CHECK dstType HERE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 6011 | #warning WHY CHECK dstType HERE | ^~~~~~~ silo.c:6038:2: warning: #warning USE FILE-BASED FUNCTION WHEN AVAILABLE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 6038 | #warning USE FILE-BASED FUNCTION WHEN AVAILABLE | ^~~~~~~ silo.c: In function 'DBCp': silo.c:6253:2: warning: #warning WHAT ABOUT API MACROS. MAYBE NOT NEEDED SINCE NOT CALLING DOWN INTO DRIVERS [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 6253 | #warning WHAT ABOUT API MACROS. MAYBE NOT NEEDED SINCE NOT CALLING DOWN INTO DRIVERS | ^~~~~~~ silo.c:6254:2: warning: #warning WHAT ABOUT -f (force) OPTION [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 6254 | #warning WHAT ABOUT -f (force) OPTION | ^~~~~~~ silo.c:6273:2: warning: #warning WARN ABOUT CERTAIN OPTIONS NOT YET SUPPORTED [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 6273 | #warning WARN ABOUT CERTAIN OPTIONS NOT YET SUPPORTED | ^~~~~~~ silo.c:6359:2: warning: #warning FIX LEAKS WITH EARLY RETURN HERE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 6359 | #warning FIX LEAKS WITH EARLY RETURN HERE | ^~~~~~~ silo.c:6466:18: warning: passing argument 1 of 'free' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdiscarded-qualifiers]] 6466 | free(srcDirBaseName); | ^~~~~~~~~~~~~~ In file included from silo.c:83: /usr/include/stdlib.h:41:12: note: expected 'void *' but argument is of type 'const char *' 41 | void free (void *); | ^~~~~~ silo.c: In function 'DBGetPartialObject': silo.c:6644:2: warning: #warning FIX THIS METHOD [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 6644 | #warning FIX THIS METHOD | ^~~~~~~ silo.c: At top level: silo.c:8164:2: warning: #warning DO WE NEED THIS METHOD [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 8164 | #warning DO WE NEED THIS METHOD | ^~~~~~~ silo.c: In function 'DBPutMaterial': silo.c:8939:2: warning: #warning BETTER PLACE TO NULL THESE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 8939 | #warning BETTER PLACE TO NULL THESE | ^~~~~~~ silo.c: In function 'DBPutMultimat': silo.c:9338:2: warning: #warning BETTER PLACE TO NULL THESE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 9338 | #warning BETTER PLACE TO NULL THESE | ^~~~~~~ silo.c: In function 'DBPutZonelist2': silo.c:10330:2: warning: #warning HI AND LO OFFSET NOT VALID IN PRESENCE OF EXPLICIT GHOST LABELS [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 10330 | #warning HI AND LO OFFSET NOT VALID IN PRESENCE OF EXPLICIT GHOST LABELS | ^~~~~~~ silo.c: In function 'DBStringArrayToStringList': silo.c:13312:2: warning: #warning TEST THIS LOGIC [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 13312 | #warning TEST THIS LOGIC | ^~~~~~~ /bin/sh ../../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libsilo_silo.la alloc.lo extface.lo silo.lo silo_ns.lo utils.lo silo_f.lo -lhdf5 -lm libtool: link: x86_64-gentoo-linux-musl-ar cru .libs/libsilo_silo.a .libs/alloc.o .libs/extface.o .libs/silo.o .libs/silo_ns.o .libs/utils.o .libs/silo_f.o libtool: link: x86_64-gentoo-linux-musl-ranlib .libs/libsilo_silo.a libtool: link: ( cd ".libs" && rm -f "libsilo_silo.la" && ln -s "../libsilo_silo.la" "libsilo_silo.la" ) make[5]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/silo' make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/silo' Making all in debug make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/debug' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o silo_debug.lo silo_debug.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c silo_debug.c -fPIC -DPIC -o .libs/silo_debug.o /bin/sh ../../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libsilo_debug.la silo_debug.lo -lhdf5 -lm libtool: link: x86_64-gentoo-linux-musl-ar cru .libs/libsilo_debug.a .libs/silo_debug.o libtool: link: x86_64-gentoo-linux-musl-ranlib .libs/libsilo_debug.a libtool: link: ( cd ".libs" && rm -f "libsilo_debug.la" && ln -s "../libsilo_debug.la" "libsilo_debug.la" ) make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/debug' Making all in netcdf make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/netcdf' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o api.lo api.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o ent.lo ent.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o netcdf.lo netcdf.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o obj.lo obj.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o silo_netcdf.lo silo_netcdf.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o table.lo table.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c api.c -fPIC -DPIC -o .libs/api.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c obj.c -fPIC -DPIC -o .libs/obj.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c silo_netcdf.c -fPIC -DPIC -o .libs/silo_netcdf.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c netcdf.c -fPIC -DPIC -o .libs/netcdf.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c table.c -fPIC -DPIC -o .libs/table.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c ent.c -fPIC -DPIC -o .libs/ent.o /bin/sh ../../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libsilo_netcdf.la api.lo ent.lo netcdf.lo obj.lo silo_netcdf.lo table.lo -lhdf5 -lm libtool: link: x86_64-gentoo-linux-musl-ar cru .libs/libsilo_netcdf.a .libs/api.o .libs/ent.o .libs/netcdf.o .libs/obj.o .libs/silo_netcdf.o .libs/table.o libtool: link: x86_64-gentoo-linux-musl-ranlib .libs/libsilo_netcdf.a libtool: link: ( cd ".libs" && rm -f "libsilo_netcdf.la" && ln -s "../libsilo_netcdf.la" "libsilo_netcdf.la" ) make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/netcdf' Making all in pdb_drv make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/pdb_drv' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o silo_pdb.lo silo_pdb.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../pdb -I./../silo -I./../silo -I./../score -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c silo_pdb.c -fPIC -DPIC -o .libs/silo_pdb.o /bin/sh ../../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libsilo_pdb_drv.la silo_pdb.lo -lhdf5 -lm libtool: link: x86_64-gentoo-linux-musl-ar cru .libs/libsilo_pdb_drv.a .libs/silo_pdb.o libtool: link: x86_64-gentoo-linux-musl-ranlib .libs/libsilo_pdb_drv.a libtool: link: ( cd ".libs" && rm -f "libsilo_pdb_drv.la" && ln -s "../libsilo_pdb_drv.la" "libsilo_pdb_drv.la" ) make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/pdb_drv' Making all in hdf5_drv make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/hdf5_drv' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -DH5_HAVE_FILTER_ZFP -DH5Z_ZFP_AS_LIB -DAS_SILO_BUILTIN -I./../zfp-0.5.5/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o silo_hdf5.lo silo_hdf5.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -DH5_HAVE_FILTER_ZFP -DH5Z_ZFP_AS_LIB -DAS_SILO_BUILTIN -I./../zfp-0.5.5/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o H5FDsilo.lo H5FDsilo.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -DH5_HAVE_FILTER_ZFP -DH5Z_ZFP_AS_LIB -DAS_SILO_BUILTIN -I./../zfp-0.5.5/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o H5Zzfp.lo H5Zzfp.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -DH5_HAVE_FILTER_ZFP -DH5Z_ZFP_AS_LIB -DAS_SILO_BUILTIN -I./../zfp-0.5.5/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c silo_hdf5.c -fPIC -DPIC -o .libs/silo_hdf5.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -DH5_HAVE_FILTER_ZFP -DH5Z_ZFP_AS_LIB -DAS_SILO_BUILTIN -I./../zfp-0.5.5/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c H5Zzfp.c -fPIC -DPIC -o .libs/H5Zzfp.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -DH5_HAVE_FILTER_ZFP -DH5Z_ZFP_AS_LIB -DAS_SILO_BUILTIN -I./../zfp-0.5.5/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c H5FDsilo.c -fPIC -DPIC -o .libs/H5FDsilo.o silo_hdf5.c:61:2: warning: #warning DO WE NEED THIS HEADER FILE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 61 | #warning DO WE NEED THIS HEADER FILE | ^~~~~~~ H5FDsilo.c:500:2: warning: #warning REMOVE ME [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 500 | #warning REMOVE ME | ^~~~~~~ In file included from silo_hdf5.c:74: silo_hdf5_private.h:110:2: warning: #warning REMOVE db_hdf5_CpListedObjects [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 110 | #warning REMOVE db_hdf5_CpListedObjects | ^~~~~~~ In file included from silo_hdf5_private.h:67, from silo_hdf5.c:74: silo_hdf5.c: In function 'db_hdf5_get_obj_dsnames': silo_hdf5.c:1812:45: warning: passing argument 1 of '_db_safe_strdup' makes pointer from integer without a cast [-Wint-conversion[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wint-conversion]] 1812 | (*dsnames)[i] = strdup(m.MEMNAME[i]); \ | ~~~~~~~~~^~~ | | | char ./../silo/silo_private.h:939:35: note: in definition of macro 'strdup' 939 | #define strdup(s) _db_safe_strdup(s) | ^ silo_hdf5.c:1869:13: note: in expansion of macro 'DB_OBJ_CASE' 1869 | DB_OBJ_CASE(DB_CURVE, DBcurve_mt, npts?1:1, yvarname) | ^~~~~~~~~~~ In file included from ./../silo/silo_private.h:79, from silo_hdf5_private.h:67, from silo_hdf5.c:74: ./../silo/silo.h:2214:56: note: expected 'const char *' but argument is of type 'char' 2214 | SILO_API extern char * _db_safe_strdup(const char *); | ^~~~~~~~~~~~ silo_hdf5.c: In function 'db_hdf5_init': silo_hdf5.c:2173:5: warning: implicit declaration of function 'zfp_init_zfp' [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]] 2173 | zfp_init_zfp(); | ^~~~~~~~~~~~ H5FDsilo.c: In function 'H5FD_silo_get_eof': H5FDsilo.c:1981:2: warning: #warning TAKE ADVANTAGE OF TYPE INFO HERE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1981 | #warning TAKE ADVANTAGE OF TYPE INFO HERE | ^~~~~~~ silo_hdf5.c: In function 'db_hdf5_InitCallbacks': silo_hdf5.c:2799:2: warning: #warning GET RID OF CPLISTEDOBJECTS [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 2799 | #warning GET RID OF CPLISTEDOBJECTS | ^~~~~~~ silo_hdf5.c: In function 'db_hdf5_set_compression': silo_hdf5.c:3347:2: warning: #warning WHAT ABOUT NULL RETURN FROM DBGETCOMPRESSION [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 3347 | #warning WHAT ABOUT NULL RETURN FROM DBGETCOMPRESSION | ^~~~~~~ silo_hdf5.c:3378:2: warning: #warning FIX MISSING .compressionMinsize member [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 3378 | #warning FIX MISSING .compressionMinsize member | ^~~~~~~ silo_hdf5.c:3396:2: warning: #warning QUERY FILE LEVEL COMPRESSION PARAMS HERE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 3396 | #warning QUERY FILE LEVEL COMPRESSION PARAMS HERE | ^~~~~~~ silo_hdf5.c: In function 'load_toc': silo_hdf5.c:4121:2: warning: #warning REVISIT THIS CODE BLOCK [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 4121 | #warning REVISIT THIS CODE BLOCK | ^~~~~~~ silo_hdf5.c: In function 'db_hdf5_resolvename': silo_hdf5.c:4736:2: warning: #warning HARD CODED SIZE HERE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 4736 | #warning HARD CODED SIZE HERE | ^~~~~~~ silo_hdf5.c: In function 'db_hdf5_process_file_options': silo_hdf5.c:4960:2: warning: #warning FIX ME...THIS NEEDS TO BE CONDITION ON COMPAT MODE WORKS FOR 1.8.0 [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 4960 | #warning FIX ME...THIS NEEDS TO BE CONDITION ON COMPAT MODE WORKS FOR 1.8.0 | ^~~~~~~ silo_hdf5.c:4967:2: warning: #warning SET FRIENDLY NAMES TO 2 but only at file level [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 4967 | #warning SET FRIENDLY NAMES TO 2 but only at file level | ^~~~~~~ silo_hdf5.c:5004:2: warning: #warning REMOVED WINDOWS SPECIFIC CHECK [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 5004 | #warning REMOVED WINDOWS SPECIFIC CHECK | ^~~~~~~ silo_hdf5.c:5094:2: warning: #warning DO WE STILL NEED THIS [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 5094 | #warning DO WE STILL NEED THIS | ^~~~~~~ silo_hdf5.c:5158:2: warning: #warning REMOVED WINDOWS SPECIFIC CHECK [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 5158 | #warning REMOVED WINDOWS SPECIFIC CHECK | ^~~~~~~ silo_hdf5.c:5517:2: warning: #warning FIX THIS [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 5517 | #warning FIX THIS | ^~~~~~~ silo_hdf5.c: In function 'db_hdf5_Create': silo_hdf5.c:5971:2: warning: #warning BACKWARD COMPAT ISSUE FOR HDF5 [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 5971 | #warning BACKWARD COMPAT ISSUE FOR HDF5 | ^~~~~~~ silo_hdf5.c:6006:2: warning: #warning FIX FILE SCOPE GLOBAL INITIALIZATION [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 6006 | #warning FIX FILE SCOPE GLOBAL INITIALIZATION | ^~~~~~~ silo_hdf5.c: In function 'copy_obj': silo_hdf5.c:6470:2: warning: #warning WHY THIS SIZE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 6470 | #warning WHY THIS SIZE | ^~~~~~~ silo_hdf5.c: At top level: silo_hdf5.c:6639:2: warning: #warning REMOVE THIS MAYBE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 6639 | #warning REMOVE THIS MAYBE | ^~~~~~~ silo_hdf5.c: In function 'db_hdf5_WriteObject': silo_hdf5.c:7376:2: warning: #warning COMPATABILITY ISSUE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 7376 | #warning COMPATABILITY ISSUE | ^~~~~~~ silo_hdf5.c: In function 'db_hdf5_get_var_byte_length': silo_hdf5.c:7749:2: warning: #warning REMOVED db_perror CALLS [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 7749 | #warning REMOVED db_perror CALLS | ^~~~~~~ silo_hdf5.c: In function 'db_hdf5_WriteCKZ': silo_hdf5.c:8395:2: warning: #warning WHAT IF EXISTING DATASET WAS COMPRESSED [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 8395 | #warning WHAT IF EXISTING DATASET WAS COMPRESSED | ^~~~~~~ silo_hdf5.c:8437:2: warning: #warning COMPARE TO -1 OR TO NEGATIVE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 8437 | #warning COMPARE TO -1 OR TO NEGATIVE | ^~~~~~~ silo_hdf5.c:8459:2: warning: #warning COMPARE TO -1 OR NEGATIVE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 8459 | #warning COMPARE TO -1 OR NEGATIVE | ^~~~~~~ silo_hdf5.c: In function 'db_hdf5_GetObject': silo_hdf5.c:8684:2: warning: #warning THIS IFDEFD CODE IS IN TRANSITION TO BETTER GENERIC OBJECTS [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 8684 | #warning THIS IFDEFD CODE IS IN TRANSITION TO BETTER GENERIC OBJECTS | ^~~~~~~ silo_hdf5.c:8781:2: warning: #warning REVISIT THIS CLEANUP CODE. IS THERE A BETTER SYMBOLIC VALUE THAN -1 [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 8781 | #warning REVISIT THIS CLEANUP CODE. IS THERE A BETTER SYMBOLIC VALUE THAN -1 | ^~~~~~~ silo_hdf5.c:8786:2: warning: #warning USE FREE() MACRO HERE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 8786 | #warning USE FREE() MACRO HERE | ^~~~~~~ silo_hdf5.c:8798:2: warning: #warning USE FREE() MACRO HERE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 8798 | #warning USE FREE() MACRO HERE | ^~~~~~~ silo_hdf5.c: In function 'db_hdf5_PutMultimat': silo_hdf5.c:14304:2: warning: #warning REPLACE WITH STRING UTILITIES [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 14304 | #warning REPLACE WITH STRING UTILITIES | ^~~~~~~ silo_hdf5.c:14342:2: warning: #warning IS THIS TAKEN CARE OF ELSEWHERE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 14342 | #warning IS THIS TAKEN CARE OF ELSEWHERE | ^~~~~~~ silo_hdf5.c:14352:2: warning: #warning IS THIS TAKEN CARE OF ELSEWHERE [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 14352 | #warning IS THIS TAKEN CARE OF ELSEWHERE | ^~~~~~~ /bin/sh ../../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libsilo_hdf5_drv.la silo_hdf5.lo H5FDsilo.lo H5Zzfp.lo -lhdf5 -lm libtool: link: x86_64-gentoo-linux-musl-ar cru .libs/libsilo_hdf5_drv.a .libs/silo_hdf5.o .libs/H5FDsilo.o .libs/H5Zzfp.o libtool: link: x86_64-gentoo-linux-musl-ranlib .libs/libsilo_hdf5_drv.a libtool: link: ( cd ".libs" && rm -f "libsilo_hdf5_drv.la" && ln -s "../libsilo_hdf5_drv.la" "libsilo_hdf5_drv.la" ) make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/hdf5_drv' Making all in taurus make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/taurus' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o silo_taurus.lo silo_taurus.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o taurus.lo taurus.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c silo_taurus.c -fPIC -DPIC -o .libs/silo_taurus.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c taurus.c -fPIC -DPIC -o .libs/taurus.o In file included from taurus.c:72: /usr/include/sys/fcntl.h:1:2: warning: #warning redirecting incorrect #include to [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1 | #warning redirecting incorrect #include to | ^~~~~~~ /bin/sh ../../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libsilo_taurus.la silo_taurus.lo taurus.lo -lhdf5 -lm libtool: link: x86_64-gentoo-linux-musl-ar cru .libs/libsilo_taurus.a .libs/silo_taurus.o .libs/taurus.o libtool: link: x86_64-gentoo-linux-musl-ranlib .libs/libsilo_taurus.a libtool: link: ( cd ".libs" && rm -f "libsilo_taurus.la" && ln -s "../libsilo_taurus.la" "libsilo_taurus.la" ) make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/taurus' Making all in zfp-0.5.5 make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/zfp-0.5.5' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/bitstream.lo src/bitstream.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode1d.lo src/decode1d.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode1f.lo src/decode1f.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode1i.lo src/decode1i.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode1l.lo src/decode1l.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode2d.lo src/decode2d.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode2f.lo src/decode2f.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode2i.lo src/decode2i.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode2l.lo src/decode2l.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode3d.lo src/decode3d.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode3f.lo src/decode3f.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode3i.lo src/decode3i.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode3l.lo src/decode3l.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode4d.lo src/decode4d.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode4f.lo src/decode4f.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o src/decode4i.lo src/decode4i.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode1d.c -fPIC -DPIC -o src/.libs/decode1d.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode1l.c -fPIC -DPIC -o src/.libs/decode1l.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode3d.c -fPIC -DPIC -o src/.libs/decode3d.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/bitstream.c -fPIC -DPIC -o src/.libs/bitstream.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode3i.c -fPIC -DPIC -o src/.libs/decode3i.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode1i.c -fPIC -DPIC -o src/.libs/decode1i.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode1f.c -fPIC -DPIC -o src/.libs/decode1f.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode3f.c -fPIC -DPIC -o src/.libs/decode3f.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode2f.c -fPIC -DPIC -o src/.libs/decode2f.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode4d.c -fPIC -DPIC -o src/.libs/decode4d.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode3l.c -fPIC -DPIC -o src/.libs/decode3l.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode4i.c -fPIC -DPIC -o src/.libs/decode4i.o In file included from src/decode1d.c:12: src/template/decodef.c: In function 'decode_block_double_1': src/template/decodef.c:15:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 15 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode2d.c -fPIC -DPIC -o src/.libs/decode2d.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode4f.c -fPIC -DPIC -o src/.libs/decode4f.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode2i.c -fPIC -DPIC -o src/.libs/decode2i.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -DBIT_STREAM_WORD_TYPE=uint8 -I./include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c src/decode2l.c -fPIC -DPIC -o src/.libs/decode2l.o In file included from src/decode1d.c:16: src/template/revdecodef.c: In function 'rev_decode_block_double_1': src/template/revdecodef.c:40:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 40 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode1f.c:12: src/template/decodef.c: In function 'decode_block_float_1': src/template/decodef.c:15:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 15 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode2f.c:12: src/template/decodef.c: In function 'decode_block_float_2': src/template/decodef.c:15:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 15 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode3f.c:12: src/template/decodef.c: In function 'decode_block_float_3': In file included from src/decode1f.c:16: src/template/revdecodef.c: In function 'rev_decode_block_float_1': src/template/decodef.c:15:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 15 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ src/template/revdecodef.c:40:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 40 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode3f.c:16: src/template/revdecodef.c: In function 'rev_decode_block_float_3': src/template/revdecodef.c:40:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 40 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode3d.c:12: src/template/decodef.c: In function 'decode_block_double_3': src/template/decodef.c:15:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 15 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode2f.c:16: src/template/revdecodef.c: In function 'rev_decode_block_float_2': src/template/revdecodef.c:40:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 40 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode3d.c:16: src/template/revdecodef.c: In function 'rev_decode_block_double_3': src/template/revdecodef.c:40:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 40 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode4d.c:12: src/template/decodef.c: In function 'decode_block_double_4': src/template/decodef.c:15:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 15 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode2d.c:12: src/template/decodef.c: In function 'decode_block_double_2': src/template/decodef.c:15:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 15 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode2d.c:16: src/template/revdecodef.c: In function 'rev_decode_block_double_2': src/template/revdecodef.c:40:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 40 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode4d.c:16: src/template/revdecodef.c: In function 'rev_decode_block_double_4': src/template/revdecodef.c:40:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 40 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode4f.c:12: src/template/decodef.c: In function 'decode_block_float_4': src/template/decodef.c:15:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 15 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ In file included from src/decode4f.c:16: src/template/revdecodef.c: In function 'rev_decode_block_float_4': src/template/revdecodef.c:40:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeclaration-after-statement]] 40 | int emax = (int)stream_read_bits(zfp->stream, EBITS) - EBIAS; | ^~~ /bin/sh ../../libtool --tag=CC 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src/.libs/encode3d.o src/.libs/encode3f.o src/.libs/encode3i.o src/.libs/encode3l.o src/.libs/encode4d.o src/.libs/encode4f.o src/.libs/encode4i.o src/.libs/encode4l.o src/.libs/zfp.o libtool: link: x86_64-gentoo-linux-musl-ranlib .libs/libsilo_zfp.a libtool: link: ( cd ".libs" && rm -f "libsilo_zfp.la" && ln -s "../libsilo_zfp.la" "libsilo_zfp.la" ) make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/zfp-0.5.5' Making all in unknown make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/unknown' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o silo_unknown.lo silo_unknown.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c silo_unknown.c -fPIC -DPIC -o .libs/silo_unknown.o /bin/sh ../../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libsilo_unknown.la silo_unknown.lo -lhdf5 -lm libtool: link: x86_64-gentoo-linux-musl-ar cru .libs/libsilo_unknown.a .libs/silo_unknown.o libtool: link: x86_64-gentoo-linux-musl-ranlib .libs/libsilo_unknown.a libtool: link: ( cd ".libs" && rm -f "libsilo_unknown.la" && ln -s "../libsilo_unknown.la" "libsilo_unknown.la" ) make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/unknown' Making all in filters make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/filters' /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o f_ale3d.lo f_ale3d.c /bin/sh ../../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o f_sample.lo f_sample.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c f_ale3d.c -fPIC -DPIC -o .libs/f_ale3d.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c f_sample.c -fPIC -DPIC -o .libs/f_sample.o /bin/sh ../../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libsilo_filters.la f_ale3d.lo f_sample.lo -lhdf5 -lm libtool: link: x86_64-gentoo-linux-musl-ar cru .libs/libsilo_filters.a .libs/f_ale3d.o .libs/f_sample.o libtool: link: x86_64-gentoo-linux-musl-ranlib .libs/libsilo_filters.a libtool: link: ( cd ".libs" && rm -f "libsilo_filters.la" && ln -s "../libsilo_filters.la" "libsilo_filters.la" ) make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src/filters' Making all in . make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src' /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o siloh5_version.lo siloh5_version.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c siloh5_version.c -fPIC -DPIC -o .libs/siloh5_version.o /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -avoid-version -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libsiloh5.la -rpath /usr/lib siloh5_version.lo score/libsilo_score.la pdb/libsilo_pdb.la silo/libsilo_silo.la debug/libsilo_debug.la netcdf/libsilo_netcdf.la pdb_drv/libsilo_pdb_drv.la hdf5_drv/libsilo_hdf5_drv.la taurus/libsilo_taurus.la zfp-0.5.5/libsilo_zfp.la unknown/libsilo_unknown.la filters/libsilo_filters.la -lhdf5 -lm libtool: link: x86_64-gentoo-linux-musl-gcc -shared -fPIC -DPIC .libs/siloh5_version.o -Wl,--whole-archive score/.libs/libsilo_score.a pdb/.libs/libsilo_pdb.a silo/.libs/libsilo_silo.a debug/.libs/libsilo_debug.a netcdf/.libs/libsilo_netcdf.a pdb_drv/.libs/libsilo_pdb_drv.a hdf5_drv/.libs/libsilo_hdf5_drv.a taurus/.libs/libsilo_taurus.a zfp-0.5.5/.libs/libsilo_zfp.a unknown/.libs/libsilo_unknown.a filters/.libs/libsilo_filters.a -Wl,--no-whole-archive -L/usr/lib -lhdf5 -lm -O2 -march=x86-64 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -Wl,-soname -Wl,libsiloh5.so -o .libs/libsiloh5.so libtool: link: ( cd ".libs" && rm -f "libsiloh5.la" && ln -s "../libsiloh5.la" "libsiloh5.la" ) make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src' make[3]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src' make[2]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/src' Making all in tools make[2]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/tools' Making all in . make[3]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/tools' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/tools' Making all in silock make[3]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/tools/silock' x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c -o silock.o silock.c /bin/sh ../../libtool --tag=CXX --mode=link x86_64-gentoo-linux-musl-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -L/usr/lib -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o silock silock.o ../../src/libsiloh5.la -lhdf5 -lm libtool: link: x86_64-gentoo-linux-musl-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/silock silock.o -L/usr/lib ../../src/.libs/libsiloh5.so -lhdf5 -lm make[3]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/tools/silock' Making all in silex make[3]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/tools/silex' o Explorer_moc.cpp Explorer.h make[3]: o: No such file or directory make[3]: [Makefile:839: Explorer_moc.cpp] Error 127 (ignored) o SiloView_moc.cpp SiloView.h make[3]: o: No such file or directory make[3]: [Makefile:839: SiloView_moc.cpp] Error 127 (ignored) o SiloDirView_moc.cpp SiloDirView.h make[3]: o: No such file or directory make[3]: [Makefile:839: SiloDirView_moc.cpp] Error 127 (ignored) o SiloDirTreeView_moc.cpp SiloDirTreeView.h make[3]: o: No such file or directory make[3]: [Makefile:839: SiloDirTreeView_moc.cpp] Error 127 (ignored) o SiloArrayView_moc.cpp SiloArrayView.h make[3]: o: No such file or directory make[3]: [Makefile:839: SiloArrayView_moc.cpp] Error 127 (ignored) o SiloValueView_moc.cpp SiloValueView.h make[3]: o: No such file or directory make[3]: [Makefile:839: SiloValueView_moc.cpp] Error 127 (ignored) o SiloObjectView_moc.cpp SiloObjectView.h make[3]: o: No such file or directory make[3]: [Makefile:839: SiloObjectView_moc.cpp] Error 127 (ignored) make all-am make[4]: Entering directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/tools/silex' x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o Explorer.o Explorer.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloView.o SiloView.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloDirView.o SiloDirView.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloDirTreeView.o SiloDirTreeView.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloArrayView.o SiloArrayView.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloValueView.o SiloValueView.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloObjectView.o SiloObjectView.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloFile.o SiloFile.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o main.o main.cpp o Explorer_moc.cpp Explorer.h make[4]: o: No such file or directory make[4]: [Makefile:839: Explorer_moc.cpp] Error 127 (ignored) o SiloView_moc.cpp SiloView.h make[4]: o: No such file or directory make[4]: [Makefile:839: SiloView_moc.cpp] Error 127 (ignored) o SiloDirView_moc.cpp SiloDirView.h make[4]: o: No such file or directory make[4]: [Makefile:839: SiloDirView_moc.cpp] Error 127 (ignored) o SiloDirTreeView_moc.cpp SiloDirTreeView.h make[4]: o: No such file or directory make[4]: [Makefile:839: SiloDirTreeView_moc.cpp] Error 127 (ignored) o SiloArrayView_moc.cpp SiloArrayView.h make[4]: o: No such file or directory make[4]: [Makefile:839: SiloArrayView_moc.cpp] Error 127 (ignored) o SiloValueView_moc.cpp SiloValueView.h make[4]: o: No such file or directory make[4]: [Makefile:839: SiloValueView_moc.cpp] Error 127 (ignored) o SiloObjectView_moc.cpp SiloObjectView.h make[4]: o: No such file or directory make[4]: [Makefile:839: SiloObjectView_moc.cpp] Error 127 (ignored) x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o Explorer_moc.o Explorer_moc.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloView_moc.o SiloView_moc.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloDirView_moc.o SiloDirView_moc.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloDirTreeView_moc.o SiloDirTreeView_moc.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloArrayView_moc.o SiloArrayView_moc.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloValueView_moc.o SiloValueView_moc.cpp x86_64-gentoo-linux-musl-g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/silo -I../../src/silo -I/usr/include -I/usr/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o SiloObjectView_moc.o SiloObjectView_moc.cpp In file included from SiloView.cpp:55: SiloView.h:58:10: fatal error: QSplitter: No such file or directory 58 | #include | ^~~~~~~~~~~ compilation terminated. In file included from SiloDirView.cpp:55: SiloDirView.h:58:10: fatal error: QTreeWidget: No such file or directory 58 | #include | ^~~~~~~~~~~~~ compilation terminated. make[4]: *** [Makefile:602: SiloView.o] Error 1 make[4]: *** Waiting for unfinished jobs.... make[4]: *** [Makefile:602: SiloDirView.o] Error 1 In file included from Explorer.cpp:55: Explorer.h:58:10: fatal error: QMainWindow: No such file or directory 58 | #include | ^~~~~~~~~~~~~ compilation terminated. In file included from SiloDirTreeView.cpp:55: SiloDirTreeView.h:58:10: fatal error: QTreeWidget: No such file or directory 58 | #include | ^~~~~~~~~~~~~ compilation terminated. In file included from SiloValueView.cpp:55: SiloValueView.h:58:10: fatal error: QMainWindow: No such file or directory 58 | #include | ^~~~~~~~~~~~~ compilation terminated. make[4]: *** [Makefile:602: Explorer.o] Error 1 make[4]: *** [Makefile:602: SiloDirTreeView.o] Error 1 make[4]: *** [Makefile:602: SiloValueView.o] Error 1 cc1plus: fatal error: SiloView_moc.cpp: No such file or directory compilation terminated. In file included from SiloArrayView.cpp:55: SiloArrayView.h:58:10: fatal error: QMainWindow: No such file or directory 58 | #include | ^~~~~~~~~~~~~ compilation terminated. make[4]: *** [Makefile:602: SiloView_moc.o] Error 1 cc1plus: fatal error: SiloArrayView_moc.cpp: No such file or directory compilation terminated. In file included from SiloObjectView.cpp:55: SiloObjectView.h:58:10: fatal error: QTreeWidget: No such file or directory 58 | #include | ^~~~~~~~~~~~~ compilation terminated. cc1plus: fatal error: Explorer_moc.cpp: No such file or directory compilation terminated. cc1plus: fatal error: SiloDirView_moc.cpp: No such file or directory compilation terminated. cc1plus: fatal error: SiloDirTreeView_moc.cpp: No such file or directory compilation terminated. In file included from SiloFile.cpp:55: SiloFile.h:60:10: fatal error: QString: No such file or directory 60 | #include | ^~~~~~~~~ compilation terminated. cc1plus: fatal error: SiloObjectView_moc.cpp: No such file or directory compilation terminated. main.cpp:55:10: fatal error: QApplication: No such file or directory 55 | #include | ^~~~~~~~~~~~~~ make[4]: *** [Makefile:602: SiloArrayView.o] Error 1 compilation terminated. cc1plus: fatal error: SiloValueView_moc.cpp: No such file or directory compilation terminated. make[4]: *** [Makefile:602: SiloArrayView_moc.o] Error 1 make[4]: *** [Makefile:602: SiloDirView_moc.o] Error 1 make[4]: *** [Makefile:602: Explorer_moc.o] Error 1 make[4]: *** [Makefile:602: SiloDirTreeView_moc.o] Error 1 make[4]: *** [Makefile:602: SiloObjectView_moc.o] Error 1 make[4]: *** [Makefile:602: SiloObjectView.o] Error 1 make[4]: *** [Makefile:602: SiloFile.o] Error 1 make[4]: *** [Makefile:602: main.o] Error 1 make[4]: *** [Makefile:602: SiloValueView_moc.o] Error 1 make[4]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/tools/silex' make[3]: *** [Makefile:487: all] Error 2 make[3]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/tools/silex' make[2]: *** [Makefile:486: all-recursive] Error 1 make[2]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd/tools' make[1]: *** [Makefile:545: all-recursive] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd' make: *** [Makefile:477: all] Error 2 * ERROR: sci-libs/silo-4.11-r1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-libs/silo-4.11-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-libs/silo-4.11-r1::gentoo'`. * The complete build log is located at '/var/log/emerge-log/build/sci-libs/silo-4.11-r1:20220407-053640.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/silo-4.11-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/silo-4.11-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd' * S: '/var/tmp/portage/sci-libs/silo-4.11-r1/work/silo-4.11-bsd'