* Package: sci-libs/vtk-9.0.3-r4  * Repository: gentoo-git  * Maintainer: sci@gentoo.org waebbl-gentoo@posteo.net,proxy-maint@gentoo.org  * USE: X abi_x86_64 amd64 cuda elibc_glibc json kernel_linux openmp python_single_target_python3_9 rendering userland_GNU video_cards_nvidia  * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox * Checking for at least 7 GiB RAM ...  [ ok ] * Checking for at least 14 GiB disk space at "/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/temp" ...  [ ok ]  * Package: sci-libs/vtk-9.0.3-r4  * Repository: gentoo-git  * Maintainer: sci@gentoo.org waebbl-gentoo@posteo.net,proxy-maint@gentoo.org  * USE: X abi_x86_64 amd64 cuda elibc_glibc json kernel_linux openmp python_single_target_python3_9 rendering userland_GNU video_cards_nvidia  * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox * Checking for at least 7 GiB RAM ...  [ ok ] * Checking for at least 14 GiB disk space at "/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/temp" ...  [ ok ] >>> Unpacking source... >>> Unpacking VTK-9.0.3.tar.gz to /var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work >>> Unpacking VTKData-9.0.3.tar.gz to /var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work >>> Source unpacked in /var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work >>> Preparing source in /var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3 ... * Dropping bundled doubleconversion ...  [ ok ] * Dropping bundled eigen ...  [ ok ] * Dropping bundled expat ...  [ ok ] * Dropping bundled freetype ...  [ ok ] * Dropping bundled gl2ps ...  [ ok ] * Dropping bundled glew ...  [ ok ] * Dropping bundled hdf5 ...  [ ok ] * Dropping bundled jpeg ...  [ ok ] * Dropping bundled jsoncpp ...  [ ok ] * Dropping bundled libproj ...  [ ok ] * Dropping bundled libxml2 ...  [ ok ] * Dropping bundled lz4 ...  [ ok ] * Dropping bundled lzma ...  [ ok ] * Dropping bundled netcdf ...  [ ok ] * Dropping bundled ogg ...  [ ok ] * Dropping bundled png ...  [ ok ] * Dropping bundled pugixml ...  [ ok ] * Dropping bundled sqlite ...  [ ok ] * Dropping bundled theora ...  [ ok ] * Dropping bundled tiff ...  [ ok ] * Dropping bundled utf8 ...  [ ok ] * Dropping bundled zlib ...  [ ok ] * Source directory (CMAKE_USE_DIR): "/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3" * Build directory (BUILD_DIR): "/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build" * Applying vtk-9.0.1-0001-fix-kepler-compute_arch-if-CUDA-toolkit-11-is-used.patch ...  [ ok ] * Applying vtk-8.2.0-freetype-2.10.3-provide-FT_CALLBACK_DEF.patch ... patching file ThirdParty/freetype/vtk_freetype.h.in Hunk #1 succeeded at 25 with fuzz 2 (offset 5 lines).  [ ok ] * Applying vtk-9.0.1-limits-include-gcc11.patch ...  [ ok ] * Applying vtk-9.0.3-IO-FFMPEG-support-FFmpeg-5.0-API-changes.patch ...  [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3 ... * Using CUDA architecture 'turing' * Source directory (CMAKE_USE_DIR): "/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3" * Build directory (BUILD_DIR): "/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build" cmake -C /var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DVTK_BUILD_ALL_MODULES=OFF -DVTK_BUILD_DOCUMENTATION=OFF -DVTK_BUILD_EXAMPLES=OFF -DVTK_ENABLE_KITS=OFF -DVTK_ENABLE_REMOTE_MODULES=OFF -DVTK_DATA_STORE=/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3/.ExternalData -DVTK_GROUP_ENABLE_Imaging=DEFAULT -DVTK_GROUP_ENABLE_Qt=DEFAULT -DVTK_GROUP_ENABLE_Rendering=WANT -DVTK_GROUP_ENABLE_StandAlone=WANT -DVTK_GROUP_ENABLE_Views=DEFAULT -DVTK_GROUP_ENABLE_Web=DEFAULT -DVTK_MODULE_ENABLE_VTK_vtkm=WANT -DVTK_MODULE_ENABLE_VTK_AcceleratorsVTKm=WANT -DVTK_PYTHON_VERSION=3 -DVTK_RELOCATABLE_INSTALL=ON -DVTK_USE_CUDA=ON -DVTK_USE_EXTERNAL=ON -DVTK_USE_MPI=OFF -DVTK_USE_TK=OFF -DVTK_USE_X=ON -DVTK_VERSIONED_INSTALL=ON -DVTK_WRAP_JAVA=OFF -DVTK_WRAP_PYTHON=OFF -DVTK_ENABLE_WRAPPING=OFF -DVTKm_CUDA_Architecture=turing -DVTK_MODULE_ENABLE_VTK_IOGeoJSON=WANT -DVTK_SMP_IMPLEMENTATION_TYPE=OpenMP -DVTKm_ENABLE_OPENMP=ON -DVTK_MODULE_USE_EXTERNAL_VTK_pegtl=OFF -DVTK_MODULE_USE_EXTERNAL_VTK_libharu=OFF -DVTK_MODULE_ENABLE_VTK_IOExportGL2PS=WANT -DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON -DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON -DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON -DVTK_BUILD_TESTING=OFF -DVTK_FORBID_DOWNLOADS=ON -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build/gentoo_toolchain.cmake /var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3 loading initial cache file /var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build/gentoo_common_config.cmake -- The C compiler identification is GNU 11.2.1 -- The CXX compiler identification is GNU 11.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success CMake Warning (dev) at /usr/share/cmake/Modules/CMakeDependentOption.cmake:84 (message): Policy CMP0127 is not set: cmake_dependent_option() supports full Condition Syntax. Run "cmake --help-policy CMP0127" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMake/vtkWrapSettings.cmake:37 (cmake_dependent_option) CMakeLists.txt:63 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Performing Test Support for 64 bit file systems -- Performing Test Support for 64 bit file systems - Success -- The CUDA compiler identification is NVIDIA 11.6.124 -- Detecting CUDA compiler ABI info -- Detecting CUDA compiler ABI info - done -- Check for working CUDA compiler: /opt/cuda/bin/nvcc - skipped -- Detecting CUDA compile features -- Detecting CUDA compile features - done -- Module testing disabled due to `VTK_FORBID_DOWNLOADS` being set. -- Checking whether wstring is available -- Checking whether wstring is available - yes -- Checking whether C compiler has ptrdiff_t in stddef.h -- Checking whether C compiler has ptrdiff_t in stddef.h - yes -- Checking whether C compiler has ssize_t in unistd.h -- Checking whether C compiler has ssize_t in unistd.h - yes -- Checking whether C compiler has clock_gettime -- Checking whether C compiler has clock_gettime - yes -- Checking whether CXX compiler has setenv -- Checking whether CXX compiler has setenv - yes -- Checking whether CXX compiler has unsetenv -- Checking whether CXX compiler has unsetenv - yes -- Checking whether CXX compiler has environ in stdlib.h -- Checking whether CXX compiler has environ in stdlib.h - no -- Checking whether CXX compiler has utimes -- Checking whether CXX compiler has utimes - yes -- Checking whether CXX compiler has utimensat -- Checking whether CXX compiler has utimensat - yes -- Checking whether CXX compiler struct stat has st_mtim member -- Checking whether CXX compiler struct stat has st_mtim member - yes -- Checking whether CXX compiler struct stat has st_mtimespec member -- Checking whether CXX compiler struct stat has st_mtimespec member - no -- Looking for include files sys/types.h, ifaddrs.h -- Looking for include files sys/types.h, ifaddrs.h - found -- Checking whether CXX compiler has rlimit64 -- Checking whether CXX compiler has rlimit64 - yes -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Checking whether backtrace works with this C++ compiler -- Checking whether backtrace works with this C++ compiler - yes -- Looking for C++ include dlfcn.h -- Looking for C++ include dlfcn.h - found -- Checking whether dladdr works with this C++ compiler -- Checking whether dladdr works with this C++ compiler - yes -- Looking for C++ include cxxabi.h -- Looking for C++ include cxxabi.h - found -- Checking whether cxxabi works with this C++ compiler -- Checking whether cxxabi works with this C++ compiler - yes -- Checking whether CXX compiler has getloadavg -- Checking whether CXX compiler has getloadavg - yes -- Checking whether is available -- Checking whether is available - yes -- Found utf8cpp: /usr/include/utf8cpp -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE CMake Warning (dev) at /usr/share/cmake/Modules/CMakeDependentOption.cmake:84 (message): Policy CMP0127 is not set: cmake_dependent_option() supports full Condition Syntax. Run "cmake --help-policy CMP0127" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): Common/Core/CMakeLists.txt:19 (cmake_dependent_option) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (OpenMP_C) does not match the name of the calling package (OpenMP). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): CMake/FindOpenMP.cmake:487 (find_package_handle_standard_args) CMake/vtkModule.cmake:4139 (find_package) Common/Core/vtkSMPSelection.cmake:33 (vtk_module_find_package) Common/Core/CMakeLists.txt:41 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenMP_C: -fopenmp (found version "4.5") CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (OpenMP_CXX) does not match the name of the calling package (OpenMP). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): CMake/FindOpenMP.cmake:487 (find_package_handle_standard_args) CMake/vtkModule.cmake:4139 (find_package) Common/Core/vtkSMPSelection.cmake:33 (vtk_module_find_package) Common/Core/CMakeLists.txt:41 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test VTK_HAS_STD_ISNAN -- Performing Test VTK_HAS_STD_ISNAN - Success -- Performing Test VTK_HAS_STD_ISINF -- Performing Test VTK_HAS_STD_ISINF - Success -- Performing Test VTK_HAS_STD_ISFINITE -- Performing Test VTK_HAS_STD_ISFINITE - Success -- Looking for isnan -- Looking for isnan - found -- Looking for isinf -- Looking for isinf - found -- Looking for isfinite -- Looking for isfinite - found -- Looking for finite -- Looking for finite - found -- Looking for fenv.h -- Looking for fenv.h - found -- Looking for feenableexcept -- Looking for feenableexcept - found -- Looking for getsockname in socket -- Looking for getsockname in socket - not found -- Checking for getsockname with socklen_t -- Checking for getsockname with socklen_t -- 1 -- Looking for SO_REUSEADDR -- Looking for SO_REUSEADDR - found -- Found Eigen3: /usr/include/eigen3 (found version "3.4.0") -- Found double-conversion: /usr/lib64/libdouble-conversion.so -- Found LZ4: /usr/lib64/liblz4.so (found version "1.9.3") -- Found LZMA: /usr/lib64/liblzma.so (found version "5.2.5") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.12") -- Found EXPAT: /usr/lib64/libexpat.so (found version "2.4.8") -- Found Freetype: /usr/lib64/libfreetype.so (found version "2.12.0") -- Found JPEG: /usr/lib64/libjpeg.so -- Found PNG: /usr/lib64/libpng.so (found version "1.6.37") -- Found TIFF: /usr/lib64/libtiff.so (found version "4.3.0") -- Found OpenGL: /usr/lib64/libOpenGL.so found components: OpenGL GLX -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found GLEW: /usr/lib64/libGLEW.so -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libz.so;/usr/lib64/libdl.a;/usr/lib64/libm.so (found version "1.10.5") found components: C HL -- Found OGG: /usr/lib64/libogg.so -- Found THEORA: /usr/lib64/libtheora.so -- Found JsonCpp: /usr/lib64/libjsoncpp.so (found suitable version "1.9.5", minimum required is "0.7.0") -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.13") -- Found GL2PS: /usr/lib64/libgl2ps.so (found suitable version "1.4.2", minimum required is "1.4.1") -- Found SQLite3: /usr/include (found version "3.38.2") -- Found LibPROJ: /usr/lib64/libproj.so (found version "7.2.1") -- Found Git: /usr/bin/git (found version "2.35.1") -- Could not use git to determine source version, using version 1.5.0 CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (OpenMP_CXX) does not match the name of the calling package (OpenMP). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): CMake/FindOpenMP.cmake:487 (find_package_handle_standard_args) ThirdParty/vtkm/vtkvtkm/vtk-m/CMake/VTKmDeviceAdapters.cmake:90 (find_package) ThirdParty/vtkm/vtkvtkm/vtk-m/CMake/VTKmWrappers.cmake:13 (include) ThirdParty/vtkm/vtkvtkm/vtk-m/CMakeLists.txt:148 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of long -- Check size of long - done -- Check size of long long -- Check size of long long - done CMake Warning (dev) at Accelerators/Vtkm/CMakeLists.txt:17 (list): Policy CMP0121 is not set: The list() command now validates parsing of index arguments. Run "cmake --help-policy CMP0121" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Invalid list index "CMAKE_MODULE_PATH". This warning is for project developers. Use -Wno-dev to suppress it. Cuda is enabled. Module VTK::AcceleratorsVTKm will be forced to build as static. -- <<< Gentoo configuration >>> Build type Gentoo Install path /usr Compiler flags: C -O2 -pipe -march=znver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check C++ -O2 -pipe -march=znver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check Linker flags: Executable -Wl,-lc -Wl,-lc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 Module -Wl,-lc -Wl,-lc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 Shared -Wl,-lc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -- Configuring done CMake Warning (dev) in ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/cont/CMakeLists.txt: Policy CMP0104 is not set: CMAKE_CUDA_ARCHITECTURES now detected for NVCC, empty CUDA_ARCHITECTURES not allowed. Run "cmake --help-policy CMP0104" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CUDA_ARCHITECTURES is empty for target "vtkm_cont". This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/worklet/CMakeLists.txt: Policy CMP0104 is not set: CMAKE_CUDA_ARCHITECTURES now detected for NVCC, empty CUDA_ARCHITECTURES not allowed. Run "cmake --help-policy CMP0104" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CUDA_ARCHITECTURES is empty for target "vtkm_worklet". This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/filter/CMakeLists.txt: Policy CMP0104 is not set: CMAKE_CUDA_ARCHITECTURES now detected for NVCC, empty CUDA_ARCHITECTURES not allowed. Run "cmake --help-policy CMP0104" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CUDA_ARCHITECTURES is empty for target "vtkm_filter". This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in ThirdParty/vtkm/vtkvtkm/vtk-m/vtkm/source/CMakeLists.txt: Policy CMP0104 is not set: CMAKE_CUDA_ARCHITECTURES now detected for NVCC, empty CUDA_ARCHITECTURES not allowed. Run "cmake --help-policy CMP0104" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CUDA_ARCHITECTURES is empty for target "vtkm_source". This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in Accelerators/Vtkm/CMakeLists.txt: Policy CMP0104 is not set: CMAKE_CUDA_ARCHITECTURES now detected for NVCC, empty CUDA_ARCHITECTURES not allowed. Run "cmake --help-policy CMP0104" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CUDA_ARCHITECTURES is empty for target "AcceleratorsVTKm". This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done -- Build files have been written to: /var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build >>> Source configured. >>> Compiling source in /var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3 ... * Source directory (CMAKE_USE_DIR): "/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3" * Build directory (BUILD_DIR): "/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build" ninja -v -j2 ninja: error: '/usr/lib64/libzip.so', needed by 'lib64/libvtkIONetCDF-9.0.so.9.0.3', missing and no known rule to make it * ERROR: sci-libs/vtk-9.0.3-r4::gentoo-git failed (compile phase): * ninja -v -j2 failed * * Call stack: * ebuild.sh, line 127: Called src_compile * environment, line 5225: Called cmake_src_compile * environment, line 1716: Called cmake_build * environment, line 1685: Called eninja * environment, line 2471: Called die * The specific snippet of code: * "$@" || die "${nonfatal_args[@]}" "${*} failed" * * If you need support, post the output of `emerge --info '=sci-libs/vtk-9.0.3-r4::gentoo-git'`, * the complete build log and the output of `emerge -pqv '=sci-libs/vtk-9.0.3-r4::gentoo-git'`. !!! When you file a bug report, please include the following information: GENTOO_VM= CLASSPATH="" JAVA_HOME="/etc/java-config-2/current-system-vm" JAVACFLAGS="" COMPILER="" and of course, the output of emerge --info =vtk-9.0.3 * The complete build log is located at '/var/log/portage/build/sci-libs/vtk-9.0.3-r4:20220406-092357.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/temp/environment'. * Working directory: '/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build' * S: '/var/tmp/portage-ondisk/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3'