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Gentoo's Bugzilla – Attachment 768915 Details for
Bug 836856
sci-biology/newick-utils-1.6-r1 fails tests on MUSL: FAIL: test_nw_gen.sh
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build.log
build.log (text/plain), 92.15 KB, created by
Agostino Sarubbo
on 2022-04-05 20:15:16 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2022-04-05 20:15:16 UTC
Size:
92.15 KB
patch
obsolete
> * Package: sci-biology/newick-utils-1.6-r1 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_musl kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/525c118216dd8499c08974e2fd9fd0f42279dd88 (Tue Apr 5 07:04:39 UTC 2022) >@@@@@ END @@@@@ > > > >################## ># emerge --info: # >################## >Portage 3.0.30 (python 3.10.4-final-0, default/linux/amd64/17.0/musl/hardened, gcc-11.2.1, musl-1.2.2-r8, 4.19.174-gentoo x86_64) >================================================================= >System uname: Linux-4.19.174-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-libc >KiB Mem: 264046488 total, 55527200 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Tue, 05 Apr 2022 07:04:38 +0000 >sh bash 5.1_p16 >ld GNU ld (Gentoo 2.38 p3) 2.38 >app-misc/pax-utils: 1.3.3::gentoo >app-shells/bash: 5.1_p16::gentoo >dev-lang/perl: 5.34.1::gentoo >dev-lang/python: 3.8.13::gentoo, 3.9.12::gentoo, 3.10.4::gentoo >dev-util/cmake: 3.23.0::gentoo >dev-util/meson: 0.61.4-r2::gentoo >sys-apps/baselayout: 2.8::gentoo >sys-apps/openrc: 0.44.10::gentoo >sys-apps/sandbox: 2.29::gentoo >sys-devel/autoconf: 2.71-r1::gentoo >sys-devel/automake: 1.16.5::gentoo >sys-devel/binutils: 2.38-r1::gentoo >sys-devel/binutils-config: 5.4.1::gentoo >sys-devel/gcc: 11.2.1_p20220115::gentoo >sys-devel/gcc-config: 2.5-r1::gentoo >sys-devel/libtool: 2.4.7::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.17::gentoo (virtual/os-headers) >sys-libs/musl: 1.2.2-r8::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-extra-opts: > sync-rsync-verify-max-age: 24 > sync-rsync-verify-metamanifest: yes > sync-rsync-verify-jobs: 1 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* BSD" >CBUILD="x86_64-gentoo-linux-musl" >CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >CHOST="x86_64-gentoo-linux-musl" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >DISTDIR="/var/tmp/portage/sci-biology/newick-utils-1.6-r1/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" >INSTALL_MASK="charset.alias /usr/share/locale/locale.alias" >LANG="C.UTF8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >MAKEOPTS="-j16" >PKGDIR="/root/tbci/binpkg" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >SHELL="/bin/bash" >USE="acl amd64 bzip2 crypt elogind hardened iconv ipv6 jumbo-build libglvnd libtirpc native-symlinks ncurses nls nptl openmp pam pcre pie readline seccomp split-usr ssl ssp test unicode xattr xtpax zlib" ABI_X86="64" ELIBC="musl" KERNEL="linux" USERLAND="GNU" >Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS > > > > > >############################## ># emerge history (qlop -mv): # >############################## > > > > >####################################### ># installed packages (qlist -ICvUSS): # >####################################### >acct-group/audio-0-r1:0 >acct-group/cdrom-0-r1:0 >acct-group/dialout-0-r1:0 >acct-group/disk-0-r1:0 >acct-group/input-0-r1:0 >acct-group/kmem-0-r1:0 >acct-group/kvm-0-r1:0 >acct-group/lp-0-r1:0 >acct-group/man-0-r1:0 >acct-group/messagebus-0-r1:0 >acct-group/portage-0:0 >acct-group/render-0-r1:0 >acct-group/sgx-0:0 >acct-group/sshd-0-r1:0 >acct-group/tape-0-r1:0 >acct-group/tty-0-r1:0 >acct-group/video-0-r1:0 >acct-user/man-1-r1:0 >acct-user/messagebus-0-r1:0 >acct-user/portage-0:0 >acct-user/sshd-0-r1:0 >app-admin/eselect-1.4.20:0 -doc -emacs -vim-syntax >app-admin/perl-cleaner-2.30:0 >app-arch/bzip2-1.0.8-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs >app-arch/gzip-1.11:0 -pic -static >app-arch/libarchive-3.6.0:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd >app-arch/tar-1.34:0 acl -minimal nls -selinux xattr >app-arch/unzip-6.0_p26:0 bzip2 -natspec unicode >app-arch/xz-utils-5.2.5-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 extra-filters nls split-usr -static-libs >app-arch/zstd-1.5.2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 -static-libs threads >app-crypt/gnupg-2.3.4-r2:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server >app-crypt/gpgme-1.17.1:1/11.6.15 -common-lisp cxx -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -qt5 -static-libs -verify-sig >app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs >app-crypt/libmd-1.0.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >app-crypt/pinentry-1.2.0:0 -caps -efl -emacs -gnome-keyring -gtk ncurses -qt5 >app-crypt/rhash-1.4.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls ssl -static-libs >app-editors/nano-6.2:0 -debug -justify -magic -minimal ncurses nls spell split-usr -static unicode >app-eselect/eselect-fontconfig-20220403:0 >app-eselect/eselect-iptables-20220320:0 >app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0 >app-eselect/eselect-pinentry-0.7.2:0 >app-misc/c_rehash-1.7-r1:0 >app-misc/ca-certificates-20211016.3.77:0 -cacert >app-misc/editor-wrapper-4-r1:0 >app-misc/mime-types-2.1.53:0 -nginx >app-misc/pax-utils-1.3.3:0 -caps -debug -python -python_single_target_python3_10 -python_single_target_python3_8 python_single_target_python3_9 seccomp >app-misc/tmux-3.2a:0 -debug -selinux -utempter -vim-syntax >app-portage/eix-0.36.1:0 -debug -doc nls -sqlite >app-portage/elt-patches-20211104:0 >app-portage/gemato-16.2:0 gpg -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test -tools >app-portage/gentoolkit-0.5.1-r1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >app-portage/portage-utils-0.93.3:0 nls openmp qmanifest qtegrity -static >app-shells/bash-5.1_p16:0 -afs -bashlogger -examples -mem-scramble net nls -plugins readline >app-shells/push-3.4:0 >app-shells/quoter-4.2:0 >app-text/ansifilter-2.18:0 -qt5 >app-text/build-docbook-catalog-2.2:0 >app-text/docbook-xml-dtd-4.5-r2:4.5 >app-text/docbook-xml-dtd-4.4-r3:4.4 >app-text/docbook-xml-dtd-4.2-r3:4.2 >app-text/docbook-xml-dtd-4.1.2-r7:4.1.2 >app-text/docbook-xsl-stylesheets-1.79.1-r2:0 -ruby >app-text/manpager-1:0 >app-text/sgml-common-0.6.3-r7:0 >app-text/xmlto-0.0.28-r8:0 -latex -text >dev-db/sqlite-3.38.2:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools >dev-lang/perl-5.34.1:0/5.34 -berkdb -debug -doc -gdbm ithreads -minimal -quadmath >dev-lang/python-3.10.4:3.10 -bluetooth -build -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml >dev-lang/python-3.9.12:3.9 -bluetooth -build -examples gdbm hardened -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml >dev-lang/python-3.8.13:3.8 -bluetooth -build -examples gdbm hardened ncurses readline sqlite ssl -test -tk -verify-sig -wininst xml >dev-lang/python-exec-2.4.8:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-lang/python-exec-conf-2.4.6:2 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 >dev-lang/tcl-8.6.12:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug threads >dev-libs/elfutils-0.186:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma nls -static-libs -test -threads utils -valgrind -zstd >dev-libs/expat-2.4.8:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs unicode >dev-libs/glib-2.72.0:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus -debug elf -fam -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr >dev-libs/gmp-6.2.1-r2:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cxx -doc -pic -static-libs >dev-libs/gobject-introspection-1.72.0:0 -doctool -gtk-doc -python_single_target_python3_10 -python_single_target_python3_8 python_single_target_python3_9 -test >dev-libs/gobject-introspection-common-1.72.0:0 >dev-libs/isl-0.24-r2:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/jsoncpp-1.9.5:0/25 -doc -test >dev-libs/libassuan-2.5.5:0 >dev-libs/libbsd-0.11.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig >dev-libs/libevent-2.1.12:0/2.1-7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 clock-gettime -debug -malloc-replacement ssl -static-libs -test threads -verbose-debug >dev-libs/libffi-3.4.2-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -exec-static-trampoline -pax-kernel -static-libs -test >dev-libs/libgcrypt-1.10.1:0/20 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_padlock -cpu_flags_x86_sha cpu_flags_x86_sse4_1 -doc o-flag-munging -static-libs -verify-sig >dev-libs/libgpg-error-1.44:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -common-lisp nls -static-libs >dev-libs/libksba-1.6.0:0 -static-libs >dev-libs/libltdl-2.4.7:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/libpcre-8.45-r1:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 cxx -jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode zlib >dev-libs/libpcre2-10.39-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode zlib >dev-libs/libpipeline-1.5.5:0 -test >dev-libs/libtasn1-4.18.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test -valgrind >dev-libs/libunistring-1.0:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs >dev-libs/libuv-1.44.1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >dev-libs/libxml2-2.9.13-r1:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -examples -icu -lzma python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 readline -static-libs -test >dev-libs/libxslt-1.1.35:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 crypt -debug -examples -static-libs >dev-libs/lzo-2.10:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples split-usr -static-libs >dev-libs/mpc-1.2.1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/mpfr-4.1.0_p13-r1:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/nettle-3.7.3:0/8-6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_neon cpu_flags_x86_aes -cpu_flags_x86_sha -doc gmp -static-libs -test >dev-libs/npth-1.6-r1:0 >dev-libs/openssl-1.1.1n:0/1.1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpu_flags_x86_sse2 -rfc3779 -sctp -sslv3 -static-libs -test -tls-compression -tls-heartbeat -vanilla -verify-sig -verify-sig >dev-libs/popt-1.18:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs >dev-perl/Devel-CheckLib-1.140.0:0 -test >dev-perl/Encode-Locale-1.50.0-r1:0 -test >dev-perl/File-Listing-6.140.0:0 -test >dev-perl/HTML-Parser-3.760.0:0 -test >dev-perl/HTML-Tagset-3.200.0-r2:0 >dev-perl/HTTP-Cookies-6.100.0:0 -test >dev-perl/HTTP-Date-6.50.0:0 >dev-perl/HTTP-Message-6.330.0:0 -test -test >dev-perl/HTTP-Negotiate-6.10.0-r2:0 -test >dev-perl/IO-HTML-1.4.0:0 -test >dev-perl/IO-Socket-INET6-2.720.0-r2:0 -test >dev-perl/IO-Socket-SSL-2.74.0:0 -examples -idn -test >dev-perl/libwww-perl-6.600.0-r1:0 ssl -test >dev-perl/Locale-gettext-1.70.0-r1:0 -test >dev-perl/LWP-MediaTypes-6.40.0:0 -test >dev-perl/LWP-Protocol-https-6.100.0:0 -test >dev-perl/Module-Build-0.423.100:0 -test >dev-perl/Mozilla-CA-20999999-r1:0 -test >dev-perl/Net-HTTP-6.210.0:0 -minimal -test >dev-perl/Net-SSLeay-1.900.0:0 -examples -examples -minimal -test >dev-perl/Socket6-0.290.0:0 -test >dev-perl/TimeDate-2.330.0-r1:0 -test >dev-perl/Try-Tiny-0.310.0:0 -minimal -test >dev-perl/URI-5.100.0:0 -test >dev-perl/WWW-RobotRules-6.20.0-r2:0 -test >dev-perl/XML-Parser-2.460.0-r2:0 >dev-python/appdirs-1.4.4-r2:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 >dev-python/certifi-3021.3.16-r1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/charset_normalizer-2.0.12:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/flit_core-3.7.1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/idna-3.3:0 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python_targets_python3_8 python_targets_python3_9 xtpax >dev-python/PySocks-1.7.1-r1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 >dev-python/requests-2.27.1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -socks5 -test >dev-python/setuptools-61.3.1-r1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/setuptools_scm-6.4.1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/tomli-2.0.1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/urllib3-1.26.9:0 -brotli -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/wheel-0.37.1-r1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 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-gnome-keyring gpg -highlight iconv -mediawiki -mediawiki-experimental nls pcre -perforce -perl -ppcsha1 -python_single_target_python3_10 -python_single_target_python3_8 python_single_target_python3_9 -subversion -test threads -tk webdav -xinetd >media-fonts/liberation-fonts-2.1.3:0 -X -X -fontforge >media-gfx/graphite2-1.3.14_p20210810-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -perl -test >media-libs/fontconfig-2.14.0-r1:1.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs -test >media-libs/freetype-2.12.0:2 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adobe-cff -brotli bzip2 cleartype-hinting -debug -doc -fontforge harfbuzz -infinality png -static-libs -svg -utils >media-libs/harfbuzz-4.2.0:0/4.0.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 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>sys-apps/debianutils-5.7:0 installkernel -static >sys-apps/diffutils-3.8:0 nls -static >sys-apps/elfix-0.9.5:0 -ptpax xtpax >sys-apps/file-5.41:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -seccomp -static-libs zlib >sys-apps/findutils-4.9.0:0 nls -selinux -static -test >sys-apps/gawk-5.1.1-r1:0 -mpfr nls readline >sys-apps/gentoo-functions-0.15:0 >sys-apps/grep-3.7:0 nls pcre -static >sys-apps/groff-1.22.4:0 -X -examples -uchardet >sys-apps/help2man-1.48.5:0 nls >sys-apps/install-xattr-0.8:0 >sys-apps/iproute2-5.17.0:0 -atm -berkdb -bpf -caps -elf iptables -libbsd -minimal -selinux >sys-apps/kbd-2.4.0:0 nls pam -test >sys-apps/kmod-29:0 -debug -doc lzma -pkcs7 -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs tools zlib -zstd >sys-apps/less-590:0 pcre unicode >sys-apps/man-db-2.10.2:0 -berkdb manpager -nls seccomp -selinux -static-libs zlib >sys-apps/net-tools-2.10:0 arp hostname ipv6 -nis nls -plipconfig -selinux -slattach -static >sys-apps/openrc-0.44.10:0 -audit -bash -debug ncurses netifrc -newnet pam -selinux -sysv-utils unicode >sys-apps/portage-3.0.30-r1:0 -apidoc -build -doc -gentoo-dev ipc native-extensions -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 rsync-verify -selinux -test xattr >sys-apps/sandbox-2.29:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nnp >sys-apps/sed-4.8:0 acl nls -selinux -static >sys-apps/shadow-4.11.1:0/4 acl -audit -bcrypt -cracklib nls pam -selinux -skey split-usr -su xattr >sys-apps/systemd-tmpfiles-249.9:0 -selinux -test >sys-apps/sysvinit-3.01:0 -ibm -selinux -static >sys-apps/texinfo-6.8:0 nls standalone -static >sys-apps/util-linux-2.38:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 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>sys-fs/e2fsprogs-1.46.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse -lto -nls split-usr -static-libs threads tools >sys-fs/udev-249.9:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl kmod -selinux split-usr -test >sys-fs/udev-init-scripts-35:0 >sys-kernel/installkernel-gentoo-5:0 -grub >sys-kernel/linux-headers-5.17:0 -headers-only >sys-libs/argp-standalone-1.4.1-r1:0 -static-libs >sys-libs/binutils-libs-2.38-r1:0/2.38 -64-bit-bfd -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cet -multitarget nls -static-libs >sys-libs/fts-standalone-1.2.7:0 -static-libs >sys-libs/gdbm-1.23:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs >sys-libs/libcap-2.63:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam split-usr -static-libs -tools >sys-libs/libseccomp-2.5.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs -test >sys-libs/musl-1.2.2-r8:0 -headers-only >sys-libs/ncurses-6.3_p20211106:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx -debug -doc -gpm -minimal -profile split-usr -static-libs -test tinfo -trace >sys-libs/obstack-standalone-1.1:0 -static-libs >sys-libs/pam-1.5.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug -filecaps -nis -selinux >sys-libs/readline-8.1_p2:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static-libs unicode -utils >sys-libs/zlib-1.2.12-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs -verify-sig >sys-process/procps-3.3.17-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode >sys-process/psmisc-23.4-r1:0 -X ipv6 nls -selinux >virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/awk-1:0 >virtual/dev-manager-0-r2:0 >virtual/editor-0-r3:0 >virtual/libc-1-r1:0 >virtual/libcrypt-1-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/libelf-3:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libudev-232-r5:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd >virtual/man-0-r4:0 >virtual/os-headers-0-r2:0 >virtual/package-manager-1:0 >virtual/pager-0:0 >virtual/perl-Carp-1.520.0-r1:0 >virtual/perl-Compress-Raw-Bzip2-2.101.0:0 >virtual/perl-Compress-Raw-Zlib-2.101.0:0 >virtual/perl-CPAN-2.290.0:0 >virtual/perl-CPAN-Meta-2.150.10-r5:0 >virtual/perl-CPAN-Meta-Requirements-2.140.0-r7:0 >virtual/perl-CPAN-Meta-YAML-0.18.0-r7:0 >virtual/perl-Data-Dumper-2.179.0:0 >virtual/perl-Digest-MD5-2.580.0:0 >virtual/perl-Encode-3.120.0:0 >virtual/perl-Exporter-5.760.0:0 >virtual/perl-ExtUtils-CBuilder-0.280.236:0 >virtual/perl-ExtUtils-Install-2.200.0:0 >virtual/perl-ExtUtils-MakeMaker-7.620.0:0 >virtual/perl-ExtUtils-Manifest-1.730.0:0 >virtual/perl-ExtUtils-ParseXS-3.430.0:0 >virtual/perl-File-Spec-3.800.0:0 >virtual/perl-File-Temp-0.231.100:0 >virtual/perl-Getopt-Long-2.520.0:0 >virtual/perl-IO-1.460.0:0 >virtual/perl-IO-Compress-2.102.0:0 >virtual/perl-IO-Socket-IP-0.410.0:0 >virtual/perl-JSON-PP-4.60.0:0 >virtual/perl-libnet-3.130.0:0 ssl >virtual/perl-MIME-Base64-3.160.0:0 >virtual/perl-Module-Metadata-1.0.37-r1:0 >virtual/perl-parent-0.238.0-r1:0 >virtual/perl-Parse-CPAN-Meta-2.150.10-r5:0 >virtual/perl-Perl-OSType-1.10.0-r5:0 >virtual/perl-podlators-4.140.0-r2:0 >virtual/perl-Scalar-List-Utils-1.560.0:0 >virtual/perl-Test-Harness-3.430.0:0 >virtual/perl-Text-ParseWords-3.300.0-r8:0 >virtual/perl-Time-Local-1.300.0:0 >virtual/perl-version-0.992.800:0 >virtual/perl-XSLoader-0.300.0-r4:0 >virtual/pkgconfig-2-r1:0 >virtual/service-manager-1:0 >virtual/ssh-0:0 -minimal >virtual/tmpfiles-0-r1:0 >virtual/ttf-fonts-1-r1:0 >virtual/udev-217-r3:0 >virtual/yacc-0:0 >www-client/pybugz-0.13-r1:0 python_targets_python3_8 python_targets_python3_9 >x11-libs/cairo-1.16.0-r5:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug -gles2-only glib -opengl -static-libs svg -utils -valgrind >x11-libs/pixman-0.40.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs >x11-misc/shared-mime-info-2.2:0 -test > > >####################### ># build.log # >####################### >>>> Unpacking source... >>>> Unpacking newick-utils-1.6.tar.gz to /var/tmp/portage/sci-biology/newick-utils-1.6-r1/work >>>> Source unpacked in /var/tmp/portage/sci-biology/newick-utils-1.6-r1/work >>>> Preparing source in /var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6 ... > * Applying newick-utils-1.6-deduplicate-libnw.patch ... > [ ok ] > * Applying newick-utils-1.6-fno-common.patch ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' ... > * Running 'libtoolize --install --copy --force --automake' ... > [ ok ] > * Running 'aclocal --system-acdir=/var/tmp/portage/sci-biology/newick-utils-1.6-r1/temp/aclocal' ... > [ ok ] > * Running 'autoconf --force' ... > [ ok ] > * Running 'autoheader' ... > [ ok ] > * Running 'automake --add-missing --copy --force-missing' ... > [ ok ] > * Running elibtoolize in: newick-utils-1.6/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6 ... > * econf: updating newick-utils-1.6/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating newick-utils-1.6/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-gentoo-linux-musl --host=x86_64-gentoo-linux-musl --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/newick-utils-1.6-r1 --htmldir=/usr/share/doc/newick-utils-1.6-r1/html --with-sysroot=/ --libdir=/usr/lib --disable-static --without-guile --without-lua --without-libxml >checking for a BSD-compatible install... /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a race-free mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking for x86_64-gentoo-linux-musl-gcc... x86_64-gentoo-linux-musl-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether the compiler supports GNU C... yes >checking whether x86_64-gentoo-linux-musl-gcc accepts -g... yes >checking for x86_64-gentoo-linux-musl-gcc option to enable C11 features... none needed >checking whether x86_64-gentoo-linux-musl-gcc understands -c and -o together... yes >checking whether make supports the include directive... yes (GNU style) >checking dependency style of x86_64-gentoo-linux-musl-gcc... none >checking for bison... bison -y >checking for flex... flex >checking for lex output file root... lex.yy >checking for lex library... none needed >checking for library containing yywrap... -lfl >checking whether yytext is a pointer... yes >checking build system type... x86_64-gentoo-linux-musl >checking host system type... x86_64-gentoo-linux-musl >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-gentoo-linux-musl-gcc... /usr/x86_64-gentoo-linux-musl/bin/ld >checking if the linker (/usr/x86_64-gentoo-linux-musl/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-gentoo-linux-musl-nm -B >checking the name lister (/usr/bin/x86_64-gentoo-linux-musl-nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 98304 >checking how to convert x86_64-gentoo-linux-musl file names to x86_64-gentoo-linux-musl format... func_convert_file_noop >checking how to convert x86_64-gentoo-linux-musl file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-gentoo-linux-musl/bin/ld option to reload object files... -r >checking for x86_64-gentoo-linux-musl-file... no >checking for file... file >checking for x86_64-gentoo-linux-musl-objdump... x86_64-gentoo-linux-musl-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-gentoo-linux-musl-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-gentoo-linux-musl-ar... x86_64-gentoo-linux-musl-ar >checking for archiver @FILE support... @ >checking for x86_64-gentoo-linux-musl-strip... x86_64-gentoo-linux-musl-strip >checking for x86_64-gentoo-linux-musl-ranlib... x86_64-gentoo-linux-musl-ranlib >checking command to parse /usr/bin/x86_64-gentoo-linux-musl-nm -B output from x86_64-gentoo-linux-musl-gcc object... ok >checking for sysroot... / >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-gentoo-linux-musl-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for stdio.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for strings.h... yes >checking for sys/stat.h... yes >checking for sys/types.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-gentoo-linux-musl-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-gentoo-linux-musl-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-gentoo-linux-musl-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-gentoo-linux-musl-gcc static flag -static works... yes >checking if x86_64-gentoo-linux-musl-gcc supports -c -o file.o... yes >checking if x86_64-gentoo-linux-musl-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-gentoo-linux-musl-gcc linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for log in -lm... yes >checking for size_t... yes >checking for working alloca.h... yes >checking for alloca... yes >checking for egrep... (cached) /bin/grep -E >checking for inttypes.h... (cached) yes >checking for libintl.h... yes >checking for malloc.h... yes >checking for stddef.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for unistd.h... (cached) yes >configure: libXML disabled by user. >configure: Guile disabled by user. >configure: Lua disabled by user. >checking for an ANSI C-conforming const... yes >checking for GNU libc compatible malloc... yes >checking for GNU libc compatible realloc... yes >checking for working strtod... yes >checking for memset... yes >checking for rint... yes >checking for strdup... yes >checking for strpbrk... yes >checking for strspn... yes >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating tests/Makefile >config.status: creating config.h >config.status: executing depfiles commands >config.status: executing libtool commands >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6 ... >make -j16 >make all-recursive >make[1]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' >Making all in src >make[2]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/src' >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indent.o indent.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indent_lex.o indent_lex.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o display.o display.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o canvas.o canvas.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o text_graph.o text_graph.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o simple_node_pos.o simple_node_pos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o svg_graph.o svg_graph.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o readline.o readline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o node_pos_alloc.o node_pos_alloc.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o xml_utils.o xml_utils.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o graph_common.o graph_common.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o svg_graph_ortho.o svg_graph_ortho.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o svg_graph_radial.o svg_graph_radial.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o newick_parser.lo newick_parser.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o newick_scanner.lo newick_scanner.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o rnode.lo rnode.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o list.lo list.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o parser.lo parser.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o link.lo link.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o tree.lo tree.c >libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c newick_parser.c -fPIC -DPIC -o .libs/newick_parser.o >libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c newick_scanner.c -fPIC -DPIC -o .libs/newick_scanner.o >libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c rnode.c -fPIC -DPIC -o .libs/rnode.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o nodemap.lo nodemap.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches 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-Wl,--as-needed ./.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_labels labels.o -Wl,--as-needed ./.libs/libnw.so -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_ed address_scanner.o address_parser.o tree_editor.o enode.o -lm libnw.la -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_gen generate.o tree_models.o -Wl,--as-needed ./.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_match match.o order_tree.o -Wl,--as-needed ./.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_stats stats.o -Wl,--as-needed ./.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_ed address_scanner.o address_parser.o tree_editor.o enode.o -Wl,--as-needed ./.libs/libnw.so -lm >make[2]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/src' >Making all in tests >make[2]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' >make[2]: Nothing to be done for 'all'. >make[2]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' >make[2]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' >make[2]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' >make[1]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' >>>> Source compiled. >>>> Test phase: sci-biology/newick-utils-1.6-r1 >make -j16 check >Making check in src >make[1]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/src' >make[1]: Nothing to be done for 'check'. >make[1]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/src' >Making check in tests >make[1]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' >make test_rnode test_list test_link test_newick_scanner test_canvas test_concat test_hash test_lca test_nodemap test_to_newick test_tree test_node_set test_enode test_rnode_iterator test_readline test_tree_models test_xml_utils test_masprintf test_error test_order_tree test_graph_common test_newick_parser test_svg_graph_radial test_subtree tree_stubs.h ../src/rnode.h >make[2]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_rnode.o test_rnode.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o tree_stubs.o tree_stubs.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_list.o test_list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_link.o test_link.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_newick_scanner.o test_newick_scanner.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_canvas.o test_canvas.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o canvas.o `test -f '../src/canvas.c' || echo './'`../src/canvas.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_concat.o test_concat.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_hash.o test_hash.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_lca.o test_lca.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_nodemap.o test_nodemap.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_to_newick.o test_to_newick.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_tree.o test_tree.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_node_set.o test_node_set.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o node_set.o `test -f '../src/node_set.c' || echo './'`../src/node_set.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_enode.o test_enode.c >In file included from test_to_newick.c:4: >/usr/include/sys/fcntl.h:1:2: warning: #warning redirecting incorrect #include <sys/fcntl.h> to <fcntl.h> [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] > 1 | #warning redirecting incorrect #include <sys/fcntl.h> to <fcntl.h> > | ^~~~~~~ >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o enode.o `test -f '../src/enode.c' || echo './'`../src/enode.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_rnode_iterator.o test_rnode_iterator.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_readline.o test_readline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o readline.o `test -f '../src/readline.c' || echo './'`../src/readline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_tree_models.o test_tree_models.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o tree_models.o `test -f '../src/tree_models.c' || echo './'`../src/tree_models.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_xml_utils.o test_xml_utils.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o xml_utils.o `test -f '../src/xml_utils.c' || echo './'`../src/xml_utils.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_masprintf.o test_masprintf.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_error.o test_error.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_order_tree.o test_order_tree.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o order_tree.o `test -f '../src/order_tree.c' || echo './'`../src/order_tree.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_graph_common.o test_graph_common.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o graph_common.o `test -f '../src/graph_common.c' || echo './'`../src/graph_common.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_newick_parser.o test_newick_parser.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_svg_graph_radial.o test_svg_graph_radial.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o svg_graph_radial.o `test -f '../src/svg_graph_radial.c' || echo './'`../src/svg_graph_radial.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o svg_graph.o `test -f '../src/svg_graph.c' || echo './'`../src/svg_graph.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o svg_graph_ortho.o `test -f '../src/svg_graph_ortho.c' || echo './'`../src/svg_graph_ortho.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o node_pos_alloc.o `test -f '../src/node_pos_alloc.c' || echo './'`../src/node_pos_alloc.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_subtree.o test_subtree.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o subtree.o `test -f '../src/subtree.c' || echo './'`../src/subtree.c >make[2]: Nothing to be done for 'tree_stubs.h'. >make[2]: Nothing to be done for '../src/rnode.h'. >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_rnode test_rnode.o tree_stubs.o ../src/libnw.la -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_newick_scanner test_newick_scanner.o ../src/libnw.la -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_canvas test_canvas.o canvas.o ../src/libnw.la -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_concat test_concat.o ../src/libnw.la -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_hash test_hash.o ../src/libnw.la -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_lca test_lca.o tree_stubs.o ../src/libnw.la -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 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test_readline test_readline.o readline.o ../src/libnw.la -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_tree_models test_tree_models.o tree_models.o ../src/libnw.la -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_rnode test_rnode.o tree_stubs.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_newick_scanner test_newick_scanner.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_canvas test_canvas.o canvas.o -Wl,--as-needed ../src/.libs/libnw.so -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_xml_utils test_xml_utils.o xml_utils.o ../src/libnw.la -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_concat test_concat.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_hash test_hash.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_to_newick test_to_newick.o tree_stubs.o -Wl,--as-needed ../src/.libs/libnw.so -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_masprintf test_masprintf.o ../src/libnw.la -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_tree test_tree.o tree_stubs.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_lca test_lca.o tree_stubs.o -Wl,--as-needed ../src/.libs/libnw.so -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_error test_error.o ../src/libnw.la -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_nodemap test_nodemap.o tree_stubs.o -Wl,--as-needed ../src/.libs/libnw.so -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_order_tree test_order_tree.o tree_stubs.o order_tree.o ../src/libnw.la -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_graph_common test_graph_common.o tree_stubs.o graph_common.o ../src/libnw.la -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_newick_parser test_newick_parser.o ../src/libnw.la -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_subtree test_subtree.o subtree.o ../src/libnw.la -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_link test_link.o tree_stubs.o ../src/libnw.la -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_svg_graph_radial test_svg_graph_radial.o svg_graph_radial.o svg_graph.o svg_graph_ortho.o readline.o xml_utils.o graph_common.o node_pos_alloc.o ../src/libnw.la -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_readline test_readline.o readline.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_enode test_enode.o enode.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_node_set test_node_set.o tree_stubs.o node_set.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_rnode_iterator test_rnode_iterator.o tree_stubs.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_tree_models test_tree_models.o tree_models.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_xml_utils test_xml_utils.o xml_utils.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_masprintf test_masprintf.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_error test_error.o -Wl,--as-needed ../src/.libs/libnw.so -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_list test_list.o ../src/libnw.la -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_newick_parser test_newick_parser.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_order_tree test_order_tree.o tree_stubs.o order_tree.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_graph_common test_graph_common.o tree_stubs.o graph_common.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_link test_link.o tree_stubs.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_subtree test_subtree.o subtree.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_svg_graph_radial test_svg_graph_radial.o svg_graph_radial.o svg_graph.o svg_graph_ortho.o readline.o xml_utils.o graph_common.o node_pos_alloc.o -Wl,--as-needed ../src/.libs/libnw.so -lm >libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_list test_list.o -Wl,--as-needed ../src/.libs/libnw.so -lm >make[2]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' >make check-TESTS >make[2]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' >make[3]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' >PASS: test_newick_parser >PASS: test_newick_scanner >PASS: test_masprintf >PASS: test_link >PASS: test_concat >PASS: test_svg_graph_radialPASS: test_lca > >PASS: test_to_newick >PASS: test_hash >PASS: test_canvas >PASS: test_enode >PASS: test_tree >PASS: test_node_set >PASS: test_nodemap >PASS: test_list >PASS: test_error >PASS: test_tree_models >PASS: test_rnode >PASS: test_rnode_iterator >PASS: test_order_tree >PASS: test_xml_utils >PASS: test_graph_common >PASS: test_subtree >FAIL: test_nw_gen.sh >PASS: test_nw_condense.sh >PASS: test_nw_trim.sh >PASS: test_nw_indent.sh >PASS: test_nw_support.sh >PASS: test_summary.sh >PASS: test_nw_sched.sh >PASS: test_nw_order.sh >PASS: test_nw_luaed.sh >PASS: test_nw_duration.sh >PASS: test_nw_prune.sh >PASS: test_nw_rename.sh >PASS: test_nw_match.sh >PASS: test_nw_labels.sh >PASS: test_nw_reroot.sh >PASS: test_nw_stats.sh >PASS: test_nw_topology.sh >PASS: test_nw_clade.sh >PASS: test_nw_ed.sh >PASS: test_nw_distance.sh >PASS: test_nw_display.sh >============================================================================ >Testsuite summary for Newick Utils 1.6 >============================================================================ ># TOTAL: 44 ># PASS: 43 ># SKIP: 0 ># XFAIL: 0 ># FAIL: 1 ># XPASS: 0 ># ERROR: 0 >============================================================================ >See tests/test-suite.log >Please report to thomas.junier@.unige.ch >============================================================================ >make[3]: *** [Makefile:1181: test-suite.log] Error 1 >make[3]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' >make[2]: *** [Makefile:1289: check-TESTS] Error 2 >make[2]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' >make[1]: *** [Makefile:1663: check-am] Error 2 >make[1]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' >make: *** [Makefile:422: check-recursive] Error 1 > * ERROR: sci-biology/newick-utils-1.6-r1::gentoo failed (test phase): > * Make check failed. See above for details. > * > * Call stack: > * ebuild.sh, line 127: Called src_test > * environment, line 1726: Called default > * phase-functions.sh, line 858: Called default_src_test > * phase-functions.sh, line 887: Called __eapi0_src_test > * phase-helpers.sh, line 809: Called die > * The specific snippet of code: > * $emake_cmd ${internal_opts} check || \ > * die "Make check failed. See above for details." > * > * If you need support, post the output of `emerge --info '=sci-biology/newick-utils-1.6-r1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-biology/newick-utils-1.6-r1::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-biology/newick-utils-1.6-r1:20220405-075108.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' > * S: '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' >
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