* Package: sci-biology/newick-utils-1.6-r1 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_musl kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox @@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; This ebuild was merged at the following commit: https://github.com/gentoo-mirror/gentoo/commit/525c118216dd8499c08974e2fd9fd0f42279dd88 (Tue Apr 5 07:04:39 UTC 2022) @@@@@ END @@@@@ ################## # emerge --info: # ################## Portage 3.0.30 (python 3.10.4-final-0, default/linux/amd64/17.0/musl/hardened, gcc-11.2.1, musl-1.2.2-r8, 4.19.174-gentoo x86_64) ================================================================= System uname: Linux-4.19.174-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-libc KiB Mem: 264046488 total, 55527200 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Tue, 05 Apr 2022 07:04:38 +0000 sh bash 5.1_p16 ld GNU ld (Gentoo 2.38 p3) 2.38 app-misc/pax-utils: 1.3.3::gentoo app-shells/bash: 5.1_p16::gentoo dev-lang/perl: 5.34.1::gentoo dev-lang/python: 3.8.13::gentoo, 3.9.12::gentoo, 3.10.4::gentoo dev-util/cmake: 3.23.0::gentoo dev-util/meson: 0.61.4-r2::gentoo sys-apps/baselayout: 2.8::gentoo sys-apps/openrc: 0.44.10::gentoo sys-apps/sandbox: 2.29::gentoo sys-devel/autoconf: 2.71-r1::gentoo sys-devel/automake: 1.16.5::gentoo sys-devel/binutils: 2.38-r1::gentoo sys-devel/binutils-config: 5.4.1::gentoo sys-devel/gcc: 11.2.1_p20220115::gentoo sys-devel/gcc-config: 2.5-r1::gentoo sys-devel/libtool: 2.4.7::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.17::gentoo (virtual/os-headers) sys-libs/musl: 1.2.2-r8::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 sync-rsync-verify-metamanifest: yes sync-rsync-verify-jobs: 1 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* BSD" CBUILD="x86_64-gentoo-linux-musl" CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" CHOST="x86_64-gentoo-linux-musl" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" DISTDIR="/var/tmp/portage/sci-biology/newick-utils-1.6-r1/distdir" EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" INSTALL_MASK="charset.alias /usr/share/locale/locale.alias" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" MAKEOPTS="-j16" PKGDIR="/root/tbci/binpkg" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="acl amd64 bzip2 crypt elogind hardened iconv ipv6 jumbo-build libglvnd libtirpc native-symlinks ncurses nls nptl openmp pam pcre pie readline seccomp split-usr ssl ssp test unicode xattr xtpax zlib" ABI_X86="64" ELIBC="musl" KERNEL="linux" USERLAND="GNU" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS ############################## # emerge history (qlop -mv): # ############################## ####################################### # installed packages (qlist -ICvUSS): # ####################################### acct-group/audio-0-r1:0 acct-group/cdrom-0-r1:0 acct-group/dialout-0-r1:0 acct-group/disk-0-r1:0 acct-group/input-0-r1:0 acct-group/kmem-0-r1:0 acct-group/kvm-0-r1:0 acct-group/lp-0-r1:0 acct-group/man-0-r1:0 acct-group/messagebus-0-r1:0 acct-group/portage-0:0 acct-group/render-0-r1:0 acct-group/sgx-0:0 acct-group/sshd-0-r1:0 acct-group/tape-0-r1:0 acct-group/tty-0-r1:0 acct-group/video-0-r1:0 acct-user/man-1-r1:0 acct-user/messagebus-0-r1:0 acct-user/portage-0:0 acct-user/sshd-0-r1:0 app-admin/eselect-1.4.20:0 -doc -emacs -vim-syntax app-admin/perl-cleaner-2.30:0 app-arch/bzip2-1.0.8-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs app-arch/gzip-1.11:0 -pic -static app-arch/libarchive-3.6.0:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 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-cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs x11-misc/shared-mime-info-2.2:0 -test ####################### # build.log # ####################### >>> Unpacking source... >>> Unpacking newick-utils-1.6.tar.gz to /var/tmp/portage/sci-biology/newick-utils-1.6-r1/work >>> Source unpacked in /var/tmp/portage/sci-biology/newick-utils-1.6-r1/work >>> Preparing source in /var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6 ... * Applying newick-utils-1.6-deduplicate-libnw.patch ... [ ok ] * Applying newick-utils-1.6-fno-common.patch ... [ ok ] * Running eautoreconf in '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' ... * Running 'libtoolize --install --copy --force --automake' ... [ ok ] * Running 'aclocal --system-acdir=/var/tmp/portage/sci-biology/newick-utils-1.6-r1/temp/aclocal' ... [ ok ] * Running 'autoconf --force' ... [ ok ] * Running 'autoheader' ... [ ok ] * Running 'automake --add-missing --copy --force-missing' ... [ ok ] * Running elibtoolize in: newick-utils-1.6/ * Applying portage/1.2.0 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/2.4.3 patch ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6 ... * econf: updating newick-utils-1.6/config.sub with /usr/share/gnuconfig/config.sub * econf: updating newick-utils-1.6/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-gentoo-linux-musl --host=x86_64-gentoo-linux-musl --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/newick-utils-1.6-r1 --htmldir=/usr/share/doc/newick-utils-1.6-r1/html --with-sysroot=/ --libdir=/usr/lib --disable-static --without-guile --without-lua --without-libxml checking for a BSD-compatible install... /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for x86_64-gentoo-linux-musl-gcc... x86_64-gentoo-linux-musl-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether x86_64-gentoo-linux-musl-gcc accepts -g... yes checking for x86_64-gentoo-linux-musl-gcc option to enable C11 features... none needed checking whether x86_64-gentoo-linux-musl-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of x86_64-gentoo-linux-musl-gcc... none checking for bison... bison -y checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking for library containing yywrap... -lfl checking whether yytext is a pointer... yes checking build system type... x86_64-gentoo-linux-musl checking host system type... x86_64-gentoo-linux-musl checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-gentoo-linux-musl-gcc... /usr/x86_64-gentoo-linux-musl/bin/ld checking if the linker (/usr/x86_64-gentoo-linux-musl/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-gentoo-linux-musl-nm -B checking the name lister (/usr/bin/x86_64-gentoo-linux-musl-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 98304 checking how to convert x86_64-gentoo-linux-musl file names to x86_64-gentoo-linux-musl format... func_convert_file_noop checking how to convert x86_64-gentoo-linux-musl file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-gentoo-linux-musl/bin/ld option to reload object files... -r checking for x86_64-gentoo-linux-musl-file... no checking for file... file checking for x86_64-gentoo-linux-musl-objdump... x86_64-gentoo-linux-musl-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-gentoo-linux-musl-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-gentoo-linux-musl-ar... x86_64-gentoo-linux-musl-ar checking for archiver @FILE support... @ checking for x86_64-gentoo-linux-musl-strip... x86_64-gentoo-linux-musl-strip checking for x86_64-gentoo-linux-musl-ranlib... x86_64-gentoo-linux-musl-ranlib checking command to parse /usr/bin/x86_64-gentoo-linux-musl-nm -B output from x86_64-gentoo-linux-musl-gcc object... ok checking for sysroot... / checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-gentoo-linux-musl-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-gentoo-linux-musl-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-gentoo-linux-musl-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-gentoo-linux-musl-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-gentoo-linux-musl-gcc static flag -static works... yes checking if x86_64-gentoo-linux-musl-gcc supports -c -o file.o... yes checking if x86_64-gentoo-linux-musl-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-gentoo-linux-musl-gcc linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for log in -lm... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for egrep... (cached) /bin/grep -E checking for inttypes.h... (cached) yes checking for libintl.h... yes checking for malloc.h... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes configure: libXML disabled by user. configure: Guile disabled by user. configure: Lua disabled by user. checking for an ANSI C-conforming const... yes checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for working strtod... yes checking for memset... yes checking for rint... yes checking for strdup... yes checking for strpbrk... yes checking for strspn... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6 ... make -j16 make all-recursive make[1]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' Making all in src make[2]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/src' x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indent.o indent.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indent_lex.o indent_lex.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o display.o display.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o canvas.o canvas.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o text_graph.o text_graph.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o simple_node_pos.o simple_node_pos.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o svg_graph.o svg_graph.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o readline.o readline.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o node_pos_alloc.o node_pos_alloc.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o xml_utils.o xml_utils.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o graph_common.o graph_common.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o svg_graph_ortho.o svg_graph_ortho.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o svg_graph_radial.o svg_graph_radial.c /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o newick_parser.lo newick_parser.c /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o newick_scanner.lo newick_scanner.c /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o rnode.lo rnode.c /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o list.lo list.c /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o parser.lo parser.c /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o link.lo link.c /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o tree.lo tree.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c newick_parser.c -fPIC -DPIC -o .libs/newick_parser.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c newick_scanner.c -fPIC -DPIC -o .libs/newick_scanner.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c rnode.c -fPIC -DPIC -o .libs/rnode.o /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o nodemap.lo nodemap.c /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o hash.lo hash.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c list.c -fPIC -DPIC -o .libs/list.o /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o rnode_iterator.lo rnode_iterator.c /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o masprintf.lo masprintf.c /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o to_newick.lo to_newick.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c link.c -fPIC -DPIC -o .libs/link.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c tree.c -fPIC -DPIC -o .libs/tree.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c parser.c -fPIC -DPIC -o .libs/parser.o /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o concat.lo concat.c /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o lca.lo lca.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c nodemap.c -fPIC -DPIC -o .libs/nodemap.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c hash.c -fPIC -DPIC -o .libs/hash.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c rnode_iterator.c -fPIC -DPIC -o .libs/rnode_iterator.o libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c masprintf.c -fPIC -DPIC -o .libs/masprintf.o /bin/sh ../libtool --tag=CC --mode=compile x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o error.lo error.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c to_newick.c -fPIC -DPIC -o .libs/to_newick.o x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o clade.o clade.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o subtree.o subtree.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c concat.c -fPIC -DPIC -o .libs/concat.o x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o reroot.o reroot.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c lca.c -fPIC -DPIC -o .libs/lca.o x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o rename.o rename.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o condense.o condense.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o support.o support.c libtool: compile: x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c error.c -fPIC -DPIC -o .libs/error.o x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o node_set.o node_set.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o address_scanner.o address_scanner.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o address_parser.o address_parser.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o tree_editor.o tree_editor.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o enode.o enode.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o topology.o topology.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o distance.o distance.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o labels.o labels.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o prune.o prune.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o order.o order.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o order_tree.o order_tree.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o match.o match.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o generate.o generate.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o tree_models.o tree_models.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trim.o trim.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o duration.o duration.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o stats.o stats.c /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libnw.la -rpath /usr/lib newick_parser.lo newick_scanner.lo rnode.lo list.lo parser.lo link.lo tree.lo nodemap.lo hash.lo rnode_iterator.lo masprintf.lo to_newick.lo concat.lo lca.lo error.lo -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_indent indent.o indent_lex.o -lm libtool: link: x86_64-gentoo-linux-musl-gcc -shared -fPIC -DPIC .libs/newick_parser.o .libs/newick_scanner.o .libs/rnode.o .libs/list.o .libs/parser.o .libs/link.o .libs/tree.o .libs/nodemap.o .libs/hash.o .libs/rnode_iterator.o .libs/masprintf.o .libs/to_newick.o .libs/concat.o .libs/lca.o .libs/error.o -Wl,--as-needed -lm -O2 -march=x86-64 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -Wl,-soname -Wl,libnw.so.0 -o .libs/libnw.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libnw.so.0" && ln -s "libnw.so.0.0.0" "libnw.so.0") libtool: link: (cd ".libs" && rm -f "libnw.so" && ln -s "libnw.so.0.0.0" "libnw.so") libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_indent indent.o indent_lex.o -Wl,--as-needed -lm libtool: link: ( cd ".libs" && rm -f "libnw.la" && ln -s "../libnw.la" "libnw.la" ) /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_display display.o canvas.o text_graph.o simple_node_pos.o svg_graph.o readline.o node_pos_alloc.o xml_utils.o graph_common.o svg_graph_ortho.o svg_graph_radial.o -lm libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_clade clade.o subtree.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_reroot reroot.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_rename rename.o readline.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_condense condense.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_support support.o node_set.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_topology topology.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_distance distance.o simple_node_pos.o node_pos_alloc.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_labels labels.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_prune prune.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_order order.o order_tree.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_match match.o order_tree.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_gen generate.o tree_models.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_trim trim.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_duration duration.o libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_stats stats.o libnw.la -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_clade clade.o subtree.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_condense condense.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_rename rename.o readline.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_order order.o order_tree.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_duration duration.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_prune prune.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_display display.o canvas.o text_graph.o simple_node_pos.o svg_graph.o readline.o node_pos_alloc.o xml_utils.o graph_common.o svg_graph_ortho.o svg_graph_radial.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_reroot reroot.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_trim trim.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_topology topology.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_support support.o node_set.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_distance distance.o simple_node_pos.o node_pos_alloc.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_labels labels.o -Wl,--as-needed ./.libs/libnw.so -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o nw_ed address_scanner.o address_parser.o tree_editor.o enode.o -lm libnw.la -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_gen generate.o tree_models.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_match match.o order_tree.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_stats stats.o -Wl,--as-needed ./.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/nw_ed address_scanner.o address_parser.o tree_editor.o enode.o -Wl,--as-needed ./.libs/libnw.so -lm make[2]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/src' Making all in tests make[2]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' make[2]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' make[2]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' make[1]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' >>> Source compiled. >>> Test phase: sci-biology/newick-utils-1.6-r1 make -j16 check Making check in src make[1]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/src' make[1]: Nothing to be done for 'check'. make[1]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/src' Making check in tests make[1]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' make test_rnode test_list test_link test_newick_scanner test_canvas test_concat test_hash test_lca test_nodemap test_to_newick test_tree test_node_set test_enode test_rnode_iterator test_readline test_tree_models test_xml_utils test_masprintf test_error test_order_tree test_graph_common test_newick_parser test_svg_graph_radial test_subtree tree_stubs.h ../src/rnode.h make[2]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_rnode.o test_rnode.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o tree_stubs.o tree_stubs.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_list.o test_list.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_link.o test_link.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_newick_scanner.o test_newick_scanner.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_canvas.o test_canvas.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o canvas.o `test -f '../src/canvas.c' || echo './'`../src/canvas.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_concat.o test_concat.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_hash.o test_hash.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_lca.o test_lca.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_nodemap.o test_nodemap.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_to_newick.o test_to_newick.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_tree.o test_tree.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_node_set.o test_node_set.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o node_set.o `test -f '../src/node_set.c' || echo './'`../src/node_set.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_enode.o test_enode.c In file included from test_to_newick.c:4: /usr/include/sys/fcntl.h:1:2: warning: #warning redirecting incorrect #include to [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] 1 | #warning redirecting incorrect #include to | ^~~~~~~ x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o enode.o `test -f '../src/enode.c' || echo './'`../src/enode.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_rnode_iterator.o test_rnode_iterator.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_readline.o test_readline.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o readline.o `test -f '../src/readline.c' || echo './'`../src/readline.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_tree_models.o test_tree_models.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o tree_models.o `test -f '../src/tree_models.c' || echo './'`../src/tree_models.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_xml_utils.o test_xml_utils.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o xml_utils.o `test -f '../src/xml_utils.c' || echo './'`../src/xml_utils.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_masprintf.o test_masprintf.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_error.o test_error.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_order_tree.o test_order_tree.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o order_tree.o `test -f '../src/order_tree.c' || echo './'`../src/order_tree.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o test_graph_common.o test_graph_common.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o graph_common.o `test -f '../src/graph_common.c' || echo './'`../src/graph_common.c x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -I.. -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 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-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_link test_link.o tree_stubs.o ../src/libnw.la -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_svg_graph_radial test_svg_graph_radial.o svg_graph_radial.o svg_graph.o svg_graph_ortho.o readline.o xml_utils.o graph_common.o node_pos_alloc.o ../src/libnw.la -lm libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_readline test_readline.o readline.o -Wl,--as-needed ../src/.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe 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-Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_tree_models test_tree_models.o tree_models.o -Wl,--as-needed ../src/.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_xml_utils test_xml_utils.o xml_utils.o -Wl,--as-needed ../src/.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_masprintf test_masprintf.o -Wl,--as-needed ../src/.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_error test_error.o -Wl,--as-needed ../src/.libs/libnw.so -lm /bin/sh ../libtool --tag=CC --mode=link x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o test_list test_list.o ../src/libnw.la -lm libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_newick_parser test_newick_parser.o -Wl,--as-needed ../src/.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_order_tree test_order_tree.o tree_stubs.o order_tree.o -Wl,--as-needed ../src/.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_graph_common test_graph_common.o tree_stubs.o graph_common.o -Wl,--as-needed ../src/.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_link test_link.o tree_stubs.o -Wl,--as-needed ../src/.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_subtree test_subtree.o subtree.o -Wl,--as-needed ../src/.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_svg_graph_radial test_svg_graph_radial.o svg_graph_radial.o svg_graph.o svg_graph_ortho.o readline.o xml_utils.o graph_common.o node_pos_alloc.o -Wl,--as-needed ../src/.libs/libnw.so -lm libtool: link: x86_64-gentoo-linux-musl-gcc -I../src -I../../src -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/test_list test_list.o -Wl,--as-needed ../src/.libs/libnw.so -lm make[2]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' make check-TESTS make[2]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' make[3]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' PASS: test_newick_parser PASS: test_newick_scanner PASS: test_masprintf PASS: test_link PASS: test_concat PASS: test_svg_graph_radialPASS: test_lca PASS: test_to_newick PASS: test_hash PASS: test_canvas PASS: test_enode PASS: test_tree PASS: test_node_set PASS: test_nodemap PASS: test_list PASS: test_error PASS: test_tree_models PASS: test_rnode PASS: test_rnode_iterator PASS: test_order_tree PASS: test_xml_utils PASS: test_graph_common PASS: test_subtree FAIL: test_nw_gen.sh PASS: test_nw_condense.sh PASS: test_nw_trim.sh PASS: test_nw_indent.sh PASS: test_nw_support.sh PASS: test_summary.sh PASS: test_nw_sched.sh PASS: test_nw_order.sh PASS: test_nw_luaed.sh PASS: test_nw_duration.sh PASS: test_nw_prune.sh PASS: test_nw_rename.sh PASS: test_nw_match.sh PASS: test_nw_labels.sh PASS: test_nw_reroot.sh PASS: test_nw_stats.sh PASS: test_nw_topology.sh PASS: test_nw_clade.sh PASS: test_nw_ed.sh PASS: test_nw_distance.sh PASS: test_nw_display.sh ============================================================================ Testsuite summary for Newick Utils 1.6 ============================================================================ # TOTAL: 44 # PASS: 43 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 ============================================================================ See tests/test-suite.log Please report to thomas.junier@.unige.ch ============================================================================ make[3]: *** [Makefile:1181: test-suite.log] Error 1 make[3]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' make[2]: *** [Makefile:1289: check-TESTS] Error 2 make[2]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' make[1]: *** [Makefile:1663: check-am] Error 2 make[1]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6/tests' make: *** [Makefile:422: check-recursive] Error 1 * ERROR: sci-biology/newick-utils-1.6-r1::gentoo failed (test phase): * Make check failed. See above for details. * * Call stack: * ebuild.sh, line 127: Called src_test * environment, line 1726: Called default * phase-functions.sh, line 858: Called default_src_test * phase-functions.sh, line 887: Called __eapi0_src_test * phase-helpers.sh, line 809: Called die * The specific snippet of code: * $emake_cmd ${internal_opts} check || \ * die "Make check failed. See above for details." * * If you need support, post the output of `emerge --info '=sci-biology/newick-utils-1.6-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/newick-utils-1.6-r1::gentoo'`. * The complete build log is located at '/var/log/emerge-log/build/sci-biology/newick-utils-1.6-r1:20220405-075108.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6' * S: '/var/tmp/portage/sci-biology/newick-utils-1.6-r1/work/newick-utils-1.6'