build.log

build.log (text/plain), 18.38 KB, created by Miroslav Šulc on 2022-03-20 13:18:52 UTC

 * Package:    sci-libs/vtk-9.0.3-r4
 * Repository: gentoo
 * Maintainer: [e-mail] [e-mail],[e-mail]
 * USE:        X abi_x86_64 amd64 boost cuda elibc_glibc ffmpeg json kernel_linux mpi openmp python python_single_target_python3_9 qt5 rendering theora tk userland_GNU video_cards_nvidia
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
 * Checking for at least 7 GiB RAM ...
 [ ok ]
 * Checking for at least 14 GiB disk space at "/var/tmp/portage/sci-libs/vtk-9.0.3-r4/temp" ...
 [ ok ]
 * Using python3.9 to build
 * Dropping bundled doubleconversion ...
 [ ok ]
 * Dropping bundled eigen ...
 [ ok ]
 * Dropping bundled expat ...
 [ ok ]
 * Dropping bundled freetype ...
 [ ok ]
 * Dropping bundled gl2ps ...
 [ ok ]
 * Dropping bundled glew ...
 [ ok ]
 * Dropping bundled hdf5 ...
 [ ok ]
 * Dropping bundled jpeg ...
 [ ok ]
 * Dropping bundled jsoncpp ...
 [ ok ]
 * Dropping bundled libproj ...
 [ ok ]
 * Dropping bundled libxml2 ...
 [ ok ]
 * Dropping bundled lz4 ...
 [ ok ]
 * Dropping bundled lzma ...
 [ ok ]
 * Dropping bundled netcdf ...
 [ ok ]
 * Dropping bundled ogg ...
 [ ok ]
 * Dropping bundled png ...
 [ ok ]
 * Dropping bundled pugixml ...
 [ ok ]
 * Dropping bundled sqlite ...
 [ ok ]
 * Dropping bundled theora ...
 [ ok ]
 * Dropping bundled tiff ...
 [ ok ]
 * Dropping bundled utf8 ...
 [ ok ]
 * Dropping bundled zlib ...
 [ ok ]
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build"
 * Applying vtk-9.0.1-0001-fix-kepler-compute_arch-if-CUDA-toolkit-11-is-used.patch ...
 [ ok ]
 * Applying vtk-8.2.0-freetype-2.10.3-provide-FT_CALLBACK_DEF.patch ...
patching file ThirdParty/freetype/vtk_freetype.h.in
Hunk #1 succeeded at 25 with fuzz 2 (offset 5 lines).
 [ ok ]
 * Applying vtk-9.0.1-limits-include-gcc11.patch ...
 [ ok ]
 * Applying vtk-9.0.3-IO-FFMPEG-support-FFmpeg-5.0-API-changes.patch ...
 [ ok ]
 * If auto detection fails for you, please try and export the
 * VTK_CUDA_ARCH environment variable to one of the common arch
 * names: kepler, maxwell, pascal, volta, turing, ampere or all.
 * Using CUDA architecture 'native'
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build"
cmake -C /var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DVTK_BUILD_ALL_MODULES=OFF -DVTK_BUILD_DOCUMENTATION=OFF -DVTK_BUILD_EXAMPLES=OFF -DVTK_ENABLE_KITS=OFF -DVTK_ENABLE_REMOTE_MODULES=OFF -DVTK_DATA_STORE=/var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3/.ExternalData -DVTK_GROUP_ENABLE_Imaging=DEFAULT -DVTK_GROUP_ENABLE_Qt=WANT -DVTK_GROUP_ENABLE_Rendering=WANT -DVTK_GROUP_ENABLE_StandAlone=WANT -DVTK_GROUP_ENABLE_Views=DEFAULT -DVTK_GROUP_ENABLE_Web=DEFAULT -DVTK_MODULE_ENABLE_VTK_vtkm=WANT -DVTK_MODULE_ENABLE_VTK_AcceleratorsVTKm=WANT -DVTK_PYTHON_VERSION=3 -DVTK_RELOCATABLE_INSTALL=ON -DVTK_USE_CUDA=ON -DVTK_USE_EXTERNAL=ON -DVTK_USE_MPI=ON -DVTK_USE_TK=ON -DVTK_USE_X=ON -DVTK_VERSIONED_INSTALL=ON -DVTK_WRAP_JAVA=OFF -DVTK_WRAP_PYTHON=ON -DVTK_MODULE_ENABLE_VTK_InfovisBoost=WANT -DVTK_MODULE_ENABLE_VTK_InfovisBoostGraphAlgorithms=WANT -DVTKm_CUDA_Architecture=native -DVTK_MODULE_ENABLE_VTK_IOFFMPEG=WANT -DVTK_MODULE_ENABLE_VTK_IOGeoJSON=WANT -DVTK_GROUP_ENABLE_MPI=WANT -DVTK_MODULE_ENABLE_VTK_IOH5part=WANT -DVTK_MODULE_ENABLE_VTK_IOParallel=WANT -DVTK_MODULE_ENABLE_VTK_IOParallelNetCDF=WANT -DVTK_MODULE_ENABLE_VTK_IOParallelXML=WANT -DVTK_MODULE_ENABLE_VTK_ParallelMPI=WANT -DVTK_MODULE_ENABLE_VTK_RenderingParallel=WANT -DVTK_MODULE_ENABLE_VTK_h5part=WANT -DVTKm_ENABLE_MPI=ON -DVTK_MODULE_ENABLE_VTK_ParallelMPI4Py=WANT -DVTK_SMP_IMPLEMENTATION_TYPE=OpenMP -DVTKm_ENABLE_OPENMP=ON -DVTK_MODULE_USE_EXTERNAL_VTK_pegtl=OFF -DVTK_ENABLE_WRAPPING=ON -DPython3_EXECUTABLE=/usr/bin/python3.9 -DVTK_PYTHON_SITE_PACKAGES_SUFFIX=lib/python3.9/site-packages -DVTK_MODULE_ENABLE_VTK_GUISupportQt=WANT -DVTK_MODULE_ENABLE_VTK_RenderingQt=WANT -DVTK_MODULE_USE_EXTERNAL_VTK_libharu=OFF -DVTK_MODULE_ENABLE_VTK_IOExportGL2PS=WANT -DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON -DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON -DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON -DVTK_BUILD_TESTING=OFF -DVTK_FORBID_DOWNLOADS=ON -DVTK_MODULE_ENABLE_VTK_IOOggTheora=WANT -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build/gentoo_toolchain.cmake /var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3
loading initial cache file /var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 11.2.1
-- The CXX compiler identification is GNU 11.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/mpicc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/mpicxx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success
[33mCMake Warning (dev) at /usr/share/cmake/Modules/CMakeDependentOption.cmake:84 (message):
  Policy CMP0127 is not set: cmake_dependent_option() supports full Condition
  Syntax.  Run "cmake --help-policy CMP0127" for policy details.  Use the
  cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
  CMake/vtkWrapSettings.cmake:37 (cmake_dependent_option)
  CMakeLists.txt:63 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.
[0m
-- Performing Test Support for 64 bit file systems
-- Performing Test Support for 64 bit file systems - Success
-- The CUDA compiler identification is NVIDIA 11.6.112
-- Detecting CUDA compiler ABI info
-- Detecting CUDA compiler ABI info - done
-- Check for working CUDA compiler: /opt/cuda/bin/nvcc - skipped
-- Detecting CUDA compile features
-- Detecting CUDA compile features - done
-- Module testing disabled due to `VTK_FORBID_DOWNLOADS` being set.
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Checking whether wstring is available
-- Checking whether wstring is available - yes
-- Checking whether C compiler has ptrdiff_t in stddef.h
-- Checking whether C compiler has ptrdiff_t in stddef.h - yes
-- Checking whether C compiler has ssize_t in unistd.h
-- Checking whether C compiler has ssize_t in unistd.h - yes
-- Checking whether C compiler has clock_gettime
-- Checking whether C compiler has clock_gettime - yes
-- Checking whether CXX compiler has setenv
-- Checking whether CXX compiler has setenv - yes
-- Checking whether CXX compiler has unsetenv
-- Checking whether CXX compiler has unsetenv - yes
-- Checking whether CXX compiler has environ in stdlib.h
-- Checking whether CXX compiler has environ in stdlib.h - no
-- Checking whether CXX compiler has utimes
-- Checking whether CXX compiler has utimes - yes
-- Checking whether CXX compiler has utimensat
-- Checking whether CXX compiler has utimensat - yes
-- Checking whether CXX compiler struct stat has st_mtim member
-- Checking whether CXX compiler struct stat has st_mtim member - yes
-- Checking whether CXX compiler struct stat has st_mtimespec member
-- Checking whether CXX compiler struct stat has st_mtimespec member - no
-- Looking for include files sys/types.h, ifaddrs.h
-- Looking for include files sys/types.h, ifaddrs.h - found
-- Checking whether CXX compiler has rlimit64
-- Checking whether CXX compiler has rlimit64 - yes
-- Looking for C++ include execinfo.h
-- Looking for C++ include execinfo.h - found
-- Checking whether backtrace works with this C++ compiler
-- Checking whether backtrace works with this C++ compiler - yes
-- Looking for C++ include dlfcn.h
-- Looking for C++ include dlfcn.h - found
-- Checking whether dladdr works with this C++ compiler
-- Checking whether dladdr works with this C++ compiler - yes
-- Looking for C++ include cxxabi.h
-- Looking for C++ include cxxabi.h - found
-- Checking whether cxxabi works with this C++ compiler
-- Checking whether cxxabi works with this C++ compiler - yes
-- Checking whether CXX compiler has getloadavg
-- Checking whether CXX compiler has getloadavg - yes
-- Checking whether <ext/stdio_filebuf.h> is available
-- Checking whether <ext/stdio_filebuf.h> is available - yes
-- Found utf8cpp: /usr/include/utf8cpp  
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
[33mCMake Warning (dev) at /usr/share/cmake/Modules/CMakeDependentOption.cmake:84 (message):
  Policy CMP0127 is not set: cmake_dependent_option() supports full Condition
  Syntax.  Run "cmake --help-policy CMP0127" for policy details.  Use the
  cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
  Common/Core/CMakeLists.txt:19 (cmake_dependent_option)
This warning is for project developers.  Use -Wno-dev to suppress it.
[0m
[33mCMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
  The package name passed to `find_package_handle_standard_args` (OpenMP_C)
  does not match the name of the calling package (OpenMP).  This can lead to
  problems in calling code that expects `find_package` result variables
  (e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
  CMake/FindOpenMP.cmake:487 (find_package_handle_standard_args)
  CMake/vtkModule.cmake:4139 (find_package)
  Common/Core/vtkSMPSelection.cmake:33 (vtk_module_find_package)
  Common/Core/CMakeLists.txt:41 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.
[0m
-- Found OpenMP_C: -fopenmp (found version "4.5") 
[33mCMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
  The package name passed to `find_package_handle_standard_args` (OpenMP_CXX)
  does not match the name of the calling package (OpenMP).  This can lead to
  problems in calling code that expects `find_package` result variables
  (e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
  CMake/FindOpenMP.cmake:487 (find_package_handle_standard_args)
  CMake/vtkModule.cmake:4139 (find_package)
  Common/Core/vtkSMPSelection.cmake:33 (vtk_module_find_package)
  Common/Core/CMakeLists.txt:41 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.
[0m
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- Performing Test VTK_HAS_STD_ISNAN
-- Performing Test VTK_HAS_STD_ISNAN - Success
-- Performing Test VTK_HAS_STD_ISINF
-- Performing Test VTK_HAS_STD_ISINF - Success
-- Performing Test VTK_HAS_STD_ISFINITE
-- Performing Test VTK_HAS_STD_ISFINITE - Success
-- Looking for isnan
-- Looking for isnan - found
-- Looking for isinf
-- Looking for isinf - found
-- Looking for isfinite
-- Looking for isfinite - found
-- Looking for finite
-- Looking for finite - found
-- Looking for fenv.h
-- Looking for fenv.h - found
-- Looking for feenableexcept
-- Looking for feenableexcept - found
-- Looking for getsockname in socket
-- Looking for getsockname in socket - not found
-- Checking for getsockname with socklen_t
-- Checking for getsockname with socklen_t -- 1
-- Looking for SO_REUSEADDR
-- Looking for SO_REUSEADDR - found
-- Found OpenGL: /usr/lib64/libOpenGL.so  found components: OpenGL GLX 
-- Found X11: /usr/include   
-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so
-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found GLEW: /usr/lib64/libGLEW.so  
-- Found JPEG: /usr/lib64/libjpeg.so  
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") 
-- Found PNG: /usr/lib64/libpng.so (found version "1.6.37+apng") 
-- Found TIFF: /usr/lib64/libtiff.so (found version "4.3.0")  
-- Found Eigen3: /usr/include/eigen3 (found version "3.4.0") 
-- Found double-conversion: /usr/lib64/libdouble-conversion.so  
-- Found LZ4: /usr/lib64/liblz4.so (found version "1.9.3") 
-- Found LZMA: /usr/lib64/liblzma.so (found version "5.2.5") 
-- Found MPI_C: /usr/bin/mpicc (found version "3.1") 
-- Found MPI: TRUE (found version "3.1") found components: C 
-- Found EXPAT: /usr/lib64/libexpat.so (found version "2.4.7") 
-- Found Freetype: /usr/lib64/libfreetype.so (found version "2.11.1") 
-- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found version "1.78.0")  
-- Found Tclsh: /usr/bin/tclsh (found version "8.6") 
-- Found TCL: /usr/lib64/libtcl.so  
[33mCMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
  The package name passed to `find_package_handle_standard_args` (TCLTK) does
  not match the name of the calling package (TCL).  This can lead to problems
  in calling code that expects `find_package` result variables (e.g.,
  `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
  CMake/FindTCL.cmake:186 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  Rendering/Tk/CMakeLists.txt:2 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.
[0m
-- Found TCLTK: /usr/lib64/libtcl.so  
[33mCMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
  The package name passed to `find_package_handle_standard_args` (TK) does
  not match the name of the calling package (TCL).  This can lead to problems
  in calling code that expects `find_package` result variables (e.g.,
  `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
  CMake/FindTCL.cmake:189 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  Rendering/Tk/CMakeLists.txt:2 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.
[0m
-- Found TK: /usr/lib64/libtk.so  
-- Found Python3: /usr/bin/python3.9 (found suitable version "3.9.11", minimum required is "3.2") found components: Interpreter Development.Module Development.Embed 
-- Performing Test vtk_undefined_symbols_allowed - Failed
-- Found Python3: /usr/bin/python3.9 (found version "3.9.11") found components: Interpreter 
-- Found mpi4py: /usr/lib/python3.9/site-packages/mpi4py/include  
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libmpi.so;/usr/lib64/libz.so;/usr/lib64/libdl.a;/usr/lib64/libm.so (found version "1.10.5") found components: C HL 
-- Found OGG: /usr/lib64/libogg.so  
-- Found THEORA: /usr/lib64/libtheora.so  
-- Found JsonCpp: /usr/lib64/libjsoncpp.so (found suitable version "1.9.5", minimum required is "0.7.0") 
-- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.13") 
-- Found FFMPEG: /usr/include (found suitable version "4.4.1", minimum required is "2.3.3") found components: avformat avcodec avutil swscale swresample 
-- Found GL2PS: /usr/lib64/libgl2ps.so (found suitable version "1.4.2", minimum required is "1.4.1") 
-- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found version "1.78.0") found components: serialization 
-- Found SQLite3: /usr/include (found version "3.38.1") 
-- Found LibPROJ: /usr/lib64/libproj.so (found version "7.2.1") 
-- Found Git: /usr/bin/git (found version "2.35.1") 
-- Could not use git to determine source version, using version 1.5.0
[33mCMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
  The package name passed to `find_package_handle_standard_args` (OpenMP_CXX)
  does not match the name of the calling package (OpenMP).  This can lead to
  problems in calling code that expects `find_package` result variables
  (e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
  CMake/FindOpenMP.cmake:487 (find_package_handle_standard_args)
  ThirdParty/vtkm/vtkvtkm/vtk-m/CMake/VTKmDeviceAdapters.cmake:90 (find_package)
  ThirdParty/vtkm/vtkvtkm/vtk-m/CMake/VTKmWrappers.cmake:13 (include)
  ThirdParty/vtkm/vtkvtkm/vtk-m/CMakeLists.txt:148 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.
[0m
[31mCMake Error at ThirdParty/vtkm/vtkvtkm/vtk-m/CMake/VTKmDeviceAdapters.cmake:224 (message):
  Error detecting architecture flags for CUDA.  Please set
  VTKm_CUDA_Architecture manually.
Call Stack (most recent call first):
  ThirdParty/vtkm/vtkvtkm/vtk-m/CMake/VTKmWrappers.cmake:13 (include)
  ThirdParty/vtkm/vtkvtkm/vtk-m/CMakeLists.txt:148 (include)

[0m
-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build/CMakeFiles/CMakeOutput.log".
See also "/var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build/CMakeFiles/CMakeError.log".
 * ERROR: sci-libs/vtk-9.0.3-r4::gentoo failed (configure phase):
 *   cmake failed
 * 
 * Call stack:
 *     ebuild.sh, line  127:  Called src_configure
 *   environment, line 5416:  Called cmake_src_configure
 *   environment, line 1897:  Called die
 * The specific snippet of code:
 *       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/vtk-9.0.3-r4::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/vtk-9.0.3-r4::gentoo'`.
!!! When you file a bug report, please include the following information:
GENTOO_VM=  CLASSPATH="" JAVA_HOME="/etc/java-config-2/current-system-vm"
JAVACFLAGS="" COMPILER=""
and of course, the output of emerge --info =vtk-9.0.3
 * The complete build log is located at '/var/tmp/portage/sci-libs/vtk-9.0.3-r4/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/vtk-9.0.3-r4/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/vtk-9.0.3_build'
 * S: '/var/tmp/portage/sci-libs/vtk-9.0.3-r4/work/VTK-9.0.3'