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Gentoo's Bugzilla – Attachment 764575 Details for
Bug 832887
sys-cluster/torque-6.0.4-r2 - configure: error: cgroup support requires the hwloc development package
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sys-cluster:torque-6.0.4-r2:20220207-213938.log
sys-cluster:torque-6.0.4-r2:20220207-213938.log (text/plain), 20.10 KB, created by
Toralf Förster
on 2022-02-08 08:24:43 UTC
(
hide
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Description:
sys-cluster:torque-6.0.4-r2:20220207-213938.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2022-02-08 08:24:43 UTC
Size:
20.10 KB
patch
obsolete
> * Package: sys-cluster/torque-6.0.4-r2 > * Repository: gentoo > * Maintainer: cluster@gentoo.org > * USE: abi_x86_64 amd64 autorun cgroups crypt elibc_musl kernel_linux syslog userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > * Determining the location of the kernel source code > * Found kernel source directory: > * /usr/src/linux > * Found sources for kernel version: > * 5.16.6-gentoo-dist >>>> Unpacking source... >>>> Unpacking torque-6.0.4-gh-20170829.tar.gz to /var/tmp/portage/sys-cluster/torque-6.0.4-r2/work >>>> Unpacking torque-6.0.4-gcc7.patch to /var/tmp/portage/sys-cluster/torque-6.0.4-r2/work >unpack torque-6.0.4-gcc7.patch: file format not recognized. Ignoring. >>>> Unpacking torque-6.0.4-glibc-2.34-pthread.patch.bz2 to /var/tmp/portage/sys-cluster/torque-6.0.4-r2/work >>>> Source unpacked in /var/tmp/portage/sys-cluster/torque-6.0.4-r2/work >>>> Preparing source in /var/tmp/portage/sys-cluster/torque-6.0.4-r2/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6 ... > * Applying torque-6.0.4-gcc7.patch ... >patching file src/cmds/qdel.c >patching file src/cmds/qsub_functions.c >Hunk #1 succeeded at 3292 (offset -71 lines). >patching file src/cmds/qterm.c >Hunk #1 succeeded at 57 with fuzz 2 (offset -32 lines). >patching file src/include/array.h >patching file src/include/attribute.h >Hunk #1 succeeded at 503 (offset -9 lines). >patching file src/lib/Libattr/attr_fn_acl.c >patching file src/lib/Libattr/attr_fn_arst.c >Hunk #2 succeeded at 696 (offset -40 lines). >patching file src/lib/Libcmds/cvtdate.c >patching file src/lib/Libdis/disrsc.c >patching file src/lib/Libdis/disrsi.c >patching file src/lib/Libdis/disrsl.c >patching file src/lib/Libdis/disrss.c >patching file src/lib/Libnet/net_client.c >patching file src/lib/Libnet/net_common.c >Hunk #1 succeeded at 396 (offset -9 lines). >patching file src/resmom/checkpoint.c >patching file src/resmom/generate_alps_status.c >patching file src/resmom/linux/mom_mach.c >Hunk #2 succeeded at 1211 (offset -11 lines). >Hunk #3 succeeded at 1225 (offset -11 lines). >Hunk #4 succeeded at 1266 (offset -11 lines). >Hunk #5 succeeded at 1278 (offset -11 lines). >Hunk #6 succeeded at 1567 (offset -11 lines). >Hunk #7 succeeded at 1580 (offset -11 lines). >Hunk #8 succeeded at 1618 (offset -11 lines). >Hunk #9 succeeded at 1631 (offset -11 lines). >Hunk #10 succeeded at 1647 (offset -11 lines). >Hunk #11 succeeded at 5045 (offset 40 lines). >Hunk #12 succeeded at 5069 (offset 40 lines). >Hunk #13 succeeded at 5139 (offset 40 lines). >Hunk #14 succeeded at 5167 (offset 40 lines). >patching file src/resmom/mom_main.c >Hunk #1 succeeded at 1064 (offset -3 lines). >Hunk #2 succeeded at 6380 (offset -139 lines). >patching file src/resmom/mom_req_quejob.c >patching file src/resmom/mom_server.c >Hunk #1 succeeded at 1875 (offset -25 lines). >Hunk #2 succeeded at 1884 (offset -25 lines). >Hunk #3 succeeded at 1905 (offset -25 lines). >patching file src/resmom/parse_config.c >Hunk #1 succeeded at 2312 (offset -73 lines). >patching file src/resmom/requests.c >Hunk #1 succeeded at 1484 (offset -6 lines). >patching file src/scheduler.cc/samples/fifo/dedtime.c >patching file src/server/array_func.c >Hunk #2 succeeded at 93 (offset 3 lines). >Hunk #3 succeeded at 157 (offset 3 lines). >patching file src/server/array_func.h >patching file src/server/job_func.c >Hunk #1 succeeded at 2429 (offset 42 lines). >patching file src/server/node_attr_def.c >patching file src/server/node_manager.c >Hunk #1 succeeded at 934 (offset 10 lines). >patching file src/server/pbsd_init.c >Hunk #1 succeeded at 2655 (offset -12 lines). >patching file src/server/process_request.c >Hunk #1 succeeded at 777 (offset -18 lines). >Hunk #2 succeeded at 785 (offset -18 lines). >Hunk #3 succeeded at 825 (offset -18 lines). >Hunk #4 succeeded at 870 (offset -18 lines). >Hunk #5 succeeded at 954 (offset -18 lines). >patching file src/server/req_quejob.c >Hunk #1 succeeded at 324 (offset -2 lines). >patching file src/server/req_runjob.c >Hunk #1 succeeded at 1742 (offset 66 lines). >patching file src/server/req_stat.c >Hunk #1 succeeded at 243 (offset 2 lines). >patching file src/server/svr_chk_owner.c >Hunk #1 succeeded at 418 (offset 5 lines). >patching file src/test/catch_child/scaffolding.c >Hunk #1 succeeded at 1010 (offset -2 lines). >patching file src/test/geteusernam/scaffolding.c >Hunk #1 succeeded at 69 with fuzz 1 (offset 5 lines). >patching file src/test/node_manager/test_uut.c >Hunk #1 succeeded at 282 with fuzz 2 (offset -2 lines). >patching file src/test/pbs_log/scaffolding.c >patching file src/test/pbsd_main/scaffolding.c >Hunk #1 succeeded at 401 (offset -6 lines). >patching file src/test/process_alps_status/scaffolding.c >Hunk #1 succeeded at 739 (offset 26 lines). >patching file src/test/process_request/scaffolding.c >Hunk #2 succeeded at 481 (offset -8 lines). >patching file src/test/req_stat/scaffolding.c >Hunk #1 succeeded at 227 (offset 6 lines). >patching file src/test/svr_chk_owner/scaffolding.c >Hunk #1 succeeded at 74 (offset -5 lines). >patching file torque.setup.in >patching file src/server/svr_jobfunc.c > [ ok ] > * Applying torque-6.0.3-fix-emptystring-comparison.patch ... > [ ok ] > * Applying torque-6.0.4-no-openssl.patch ... >patching file README.building_40 >patching file configure.ac >Hunk #1 succeeded at 787 with fuzz 1 (offset 42 lines). >patching file src/daemon_client/Makefile.am >Hunk #1 succeeded at 4 with fuzz 2 (offset -1 lines). > [ ok ] > * Applying torque-6.0.4-error_buf_overflow_prevent.patch ... > [ ok ] > * Applying torque-6.0.4-glibc-2.34-pthread.patch ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sys-cluster/torque-6.0.4-r2/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6' ... > * Running 'libtoolize --install --copy --force --automake' ... > [ ok ] > * Running 'aclocal -I buildutils --system-acdir=/var/tmp/portage/sys-cluster/torque-6.0.4-r2/temp/aclocal' ... > [ ok ] > * Running 'autoconf --force' ... > [ ok ] > * Running 'autoheader' ... > [ ok ] > * Running 'automake --add-missing --copy --foreign --force-missing' ... > [ ok ] > * Running elibtoolize in: torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/ > * Running elibtoolize in: torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/buildutils/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... > * Applying static-flags/2.4.6 patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sys-cluster/torque-6.0.4-r2/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6 ... > * econf: updating torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/buildutils/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/buildutils/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-gentoo-linux-musl --host=x86_64-gentoo-linux-musl --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-dependency-tracking --disable-silent-rules --disable-static --docdir=/usr/share/doc/torque-6.0.4-r2 --htmldir=/usr/share/doc/torque-6.0.4-r2/html --with-sysroot=/ --libdir=/usr/lib --disable-gui --disable-tcl-qstat --enable-syslog --disable-server --disable-drmaa --disable-munge-auth --disable-nvidia-gpus --with-rcp=scp --disable-cpuset --enable-cgroups --enable-autorun --disable-quickcommit --with-server-home=/var/spool/torque --with-environ=/etc/pbs_environment --with-default-server=localhost --disable-gcc-warnings --disable-silent-rules --with-tcp-retry-limit=2 --without-loadlibfile >checking build system type... x86_64-gentoo-linux-musl >checking host system type... x86_64-gentoo-linux-musl >checking for x86_64-gentoo-linux-musl-g++... x86_64-gentoo-linux-musl-g++ >checking whether the C++ compiler works... yes >checking for C++ compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether the compiler supports GNU C++... yes >checking whether x86_64-gentoo-linux-musl-g++ accepts -g... yes >checking for x86_64-gentoo-linux-musl-g++ option to enable C++11 features... none needed >checking for x86_64-gentoo-linux-musl-gcc... x86_64-gentoo-linux-musl-gcc >checking whether the compiler supports GNU C... yes >checking whether x86_64-gentoo-linux-musl-gcc accepts -g... yes >checking for x86_64-gentoo-linux-musl-gcc option to enable C11 features... none needed >checking whether x86_64-gentoo-linux-musl-gcc understands -c and -o together... yes >checking for x86_64-gentoo-linux-musl-ar... x86_64-gentoo-linux-musl-ar >checking the archiver (x86_64-gentoo-linux-musl-ar) interface... ar >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-gentoo-linux-musl-gcc... /usr/x86_64-gentoo-linux-musl/bin/ld >checking if the linker (/usr/x86_64-gentoo-linux-musl/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-gentoo-linux-musl-nm -B >checking the name lister (/usr/bin/x86_64-gentoo-linux-musl-nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 98304 >checking how to convert x86_64-gentoo-linux-musl file names to x86_64-gentoo-linux-musl format... func_convert_file_noop >checking how to convert x86_64-gentoo-linux-musl file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-gentoo-linux-musl/bin/ld option to reload object files... -r >checking for x86_64-gentoo-linux-musl-objdump... x86_64-gentoo-linux-musl-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-gentoo-linux-musl-dlltool... x86_64-gentoo-linux-musl-dlltool >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-gentoo-linux-musl-ar... (cached) x86_64-gentoo-linux-musl-ar >checking for archiver @FILE support... @ >checking for x86_64-gentoo-linux-musl-strip... x86_64-gentoo-linux-musl-strip >checking for x86_64-gentoo-linux-musl-ranlib... x86_64-gentoo-linux-musl-ranlib >checking for gawk... gawk >checking command to parse /usr/bin/x86_64-gentoo-linux-musl-nm -B output from x86_64-gentoo-linux-musl-gcc object... ok >checking for sysroot... / >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-gentoo-linux-musl-mt... no >checking for mt... mt >checking if mt is a manifest tool... no >checking for stdio.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for strings.h... yes >checking for sys/stat.h... yes >checking for sys/types.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-gentoo-linux-musl-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-gentoo-linux-musl-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-gentoo-linux-musl-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-gentoo-linux-musl-gcc static flag -static works... yes >checking if x86_64-gentoo-linux-musl-gcc supports -c -o file.o... yes >checking if x86_64-gentoo-linux-musl-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-gentoo-linux-musl-gcc linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking how to run the C++ preprocessor... x86_64-gentoo-linux-musl-g++ -E >checking for ld used by x86_64-gentoo-linux-musl-g++... /usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-gentoo-linux-musl-g++ linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-gentoo-linux-musl-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-gentoo-linux-musl-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-gentoo-linux-musl-g++ static flag -static works... yes >checking if x86_64-gentoo-linux-musl-g++ supports -c -o file.o... yes >checking if x86_64-gentoo-linux-musl-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-gentoo-linux-musl-g++ linker (/usr/x86_64-gentoo-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for make... make >checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a race-free mkdir -p... /bin/mkdir -p >checking whether make sets $(MAKE)... yes >checking whether make supports the include directive... yes (GNU style) >checking whether make supports nested variables... yes >checking dependency style of x86_64-gentoo-linux-musl-gcc... none >checking dependency style of x86_64-gentoo-linux-musl-g++... none >checking whether to enable maintainer-specific portions of Makefiles... no >fatal: not a git repository (or any parent up to mount point /var/tmp) >Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). >cat: current_hash: No such file or directory >checking for x86_64-gentoo-linux-musl-pkg-config... /usr/bin/x86_64-gentoo-linux-musl-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking PBS machine type... linux >checking whether make supports nested variables... (cached) yes >checking whether to turn on the AUTORUN_JOBS flag... yes >checking whether to turn on the RESOURCEMAXDEFAULT flag... no >checking whether to turn on the QUICKCOMMIT flag... no >checking whether to include server and scheduler... no >checking whether to include the mom daemon... yes >checking whether to include the clients... yes >checking whether to build DRMAA lib... no >checking for ar... (cached) x86_64-gentoo-linux-musl-ar >checking whether ln -s works... yes >checking for flex... flex >checking for lex output file root... lex.yy >checking for lex library... none needed >checking whether yytext is a pointer... yes >checking for bison... bison -y >checking for gtbl... gtbl >checking for gpic... no >checking for pic... pic >checking for groff... groff >checking whether to turn on the compilation of DEBUG code... no >checking whether to compile with debugging symbols... DEBUG_SYMBOLS=yes >before tweak CFLAGS=-pipe -march=native -fno-diagnostics-color -O2 -fpermissive >mid tweak CFLAGS=-pipe -march=native -fno-diagnostics-color -fpermissive >after tweak CFLAGS=-g -pipe -march=native -fno-diagnostics-color -fpermissive >before tweak CXXFLAGS=-g -pipe -march=native -fno-diagnostics-color -O2 >mid tweak CXXFLAGS=-g -pipe -march=native -fno-diagnostics-color >after tweak CXXFLAGS=-g -pipe -march=native -fno-diagnostics-color >checking whether to disable strict gcc warnings... yes >checking for stat64... yes >checking for open64... yes >checking for lseek64... yes >./configure: line 19022: ac_fn_c_check_member: command not found >checking for struct stat64.st_mode... yes >checking if largefile compiles... checking how to run the C preprocessor... x86_64-gentoo-linux-musl-gcc -E >checking whether x86_64-gentoo-linux-musl-gcc is Clang... no >checking whether pthreads work with "-pthread" and "-lpthread"... yes >checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE >checking whether more special flags are required for pthreads... no >checking for PTHREAD_PRIO_INHERIT... yes >checking for xmlGetProp in -lxml2... yes >checking whether to create only the top temporary job directory... no >checking whether to force XOPEN networking stack... no... phew! >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking for egrep... (cached) /bin/grep -E >checking for sys/wait.h that is POSIX.1 compatible... yes >checking for arpa/inet.h... yes >checking for fcntl.h... yes >checking for float.h... yes >checking for limits.h... yes >checking for malloc.h... yes >checking for netdb.h... yes >checking for netinet/in.h... yes >checking for stddef.h... yes >checking for sys/file.h... yes >checking for sys/param.h... yes >checking for sys/tty.h... no >checking for sys/socket.h... yes >checking for sys/time.h... yes >checking for sys/ioctl.h... yes >checking for sys/mount.h... yes >checking for sys/vfs.h... yes >checking for sys/statfs.h... yes >checking for sys/statvfs.h... yes >checking for sys/ucred.h... no >checking for sys/un.h... yes >checking for sys/uio.h... yes >checking for syslog.h... yes >checking for readline/readline.h... yes >checking for termios.h... yes >checking for err.h... yes >checking for sys/poll.h... yes >checking for pam/pam_modules.h... no >checking for security/pam_appl.h... yes >checking for mach/shared_region.h... no >checking for security/pam_modules.h... yes >checking whether to enable maxint job ids... no >checking whether to enable cgroups... yes >checking whether to enable cpusets... no >checking whether to allow geometry requests... no >checking whether to support NUMA systems... no >checking whether to compile with coverage... no >checking whether to compile with MIC support... no >checking whether boost is installed... yes >checking for minimum boost version (>=1.41.0)... yes >checking whether to build Nvidia gpu support... no >checking for HWLOC... no >configure: error: cgroup support requires the hwloc development package > >Package 'hwloc', required by 'virtual:world', not found > >This can be solved by configuring with --with-hwloc-path=<path>. This path >should be the path to the directory containing the lib/ and include/ directories >for your version of hwloc. > >hwloc can be loaded by running the hwloc_install.sh script in the >contrib directory within this Torque distribution. > >Another option is adding the directory containing 'hwloc.pc' >to the PKG_CONFIG_PATH environment variable. > >If you have done these and still get this error, try running ./autogen.sh and >then configuring again. > > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sys-cluster/torque-6.0.4-r2/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/config.log > * ERROR: sys-cluster/torque-6.0.4-r2::gentoo failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 127: Called src_configure > * environment, line 2718: Called econf '--disable-gui' '--disable-tcl-qstat' '--enable-syslog' '--disable-server' '--disable-drmaa' '--disable-munge-auth' '--disable-nvidia-gpus' '--with-rcp=scp' '--disable-cpuset' '--enable-cgroups' '--enable-autorun' '--disable-quickcommit' '--with-server-home=/var/spool/torque' '--with-environ=/etc/pbs_environment' '--with-default-server=localhost' '--disable-gcc-warnings' '--disable-silent-rules' '--with-tcp-retry-limit=2' '--without-loadlibfile' > * phase-helpers.sh, line 711: Called __helpers_die 'econf failed' > * isolated-functions.sh, line 112: Called die > * The specific snippet of code: > * die "$@" > * > * If you need support, post the output of `emerge --info '=sys-cluster/torque-6.0.4-r2::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sys-cluster/torque-6.0.4-r2::gentoo'`. > * The complete build log is located at '/var/log/portage/sys-cluster:torque-6.0.4-r2:20220207-213938.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sys-cluster/torque-6.0.4-r2/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sys-cluster/torque-6.0.4-r2/temp/environment'. > * Working directory: '/var/tmp/portage/sys-cluster/torque-6.0.4-r2/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6' > * S: '/var/tmp/portage/sys-cluster/torque-6.0.4-r2/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6' >
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