sci-physics:reduze-2.4:20211220-050318.log

sci-physics:reduze-2.4:20211220-050318.log (text/plain), 17.63 KB, created by Toralf Förster on 2021-12-20 10:30:18 UTC

 * Package:    sci-physics/reduze-2.4
 * Repository: gentoo
 * Maintainer: [e-mail] [e-mail]
 * USE:        abi_x86_64 amd64 elibc_musl kernel_linux mpi userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking reduze-2.4.tar.gz to /var/tmp/portage/sci-physics/reduze-2.4/work
>>> Source unpacked in /var/tmp/portage/sci-physics/reduze-2.4/work
>>> Preparing source in /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4 ...
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4_build"
 * Applying reduze-2.4-cmake.patch ...
 [ ok ]
 * Applying reduze-2.2-db.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4 ...
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4_build"
cmake -C /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_DISABLE_FIND_PACKAGE_Git=ON -DUSE_HASH_TABLE=ON -DUSE_DATABASE=no -DENABLE_EXAMPLES=no -DUSE_MPI=yes -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4
loading initial cache file /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 11.2.1
-- The CXX compiler identification is GNU 11.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/x86_64-gentoo-linux-musl-gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/x86_64-gentoo-linux-musl-g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- running from tarball
-- Reduze version is 2.4
-- Added library 'yaml-cpp', statically linked
-- Found PkgConfig: /usr/bin/x86_64-gentoo-linux-musl-pkg-config (found version "1.8.0") 
-- Looking for C++ include tr1/unordered_map
-- Looking for C++ include tr1/unordered_map - found
-- Looking for C++ include tr1/unordered_set
-- Looking for C++ include tr1/unordered_set - found
-- MPI build required
-- Found MPI_C: /usr/lib/libmpi.so (found version "3.1") 
-- Found MPI_CXX: /usr/lib/libmpi.so (found version "3.1") 
-- Found MPI: TRUE (found version "3.1")  
--   found MPI binary /usr/bin/mpiexec
-- Building without Berkeley DB support
-- Building with Fermat support
-- Searching for GiNaC and CLN
--   found GiNaC headers in: /usr/include
--   found GiNaC library: /usr/lib/libginac.so
--   found CLN headers in: /usr/include
--   found CLN library: /usr/lib/libcln.so
--   detected GiNaC version: 1.8.0
--   found GiNaC >= 1.7, forcing C++11 compilation
-- Added build target 'reduze1to2'
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C               -pipe -march=native -fno-diagnostics-color -O2
C++             -pipe -march=native -fno-diagnostics-color -O2
Linker flags:
Executable      -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0
Module          -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0
Shared          -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0

-- Configuring done
-- Generating done
-- Build files have been written to: /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4_build
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4 ...
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4_build"
ninja -v -j4 -l0 all
[1/109] /usr/bin/x86_64-gentoo-linux-musl-g++ -DHAVE_FERMAT -DHAVE_MPI -DNEW_GINAC -DPACKAGE_NAME=\"Reduze\" -DPACKAGE_VERSION=\"2.4\" -DUSE_HASH_TABLE -DUSE_OLD_SHIFTS   -pipe -march=native -fno-diagnostics-color -O2    -Wall -Wno-long-long -pedantic -Wno-deprecated-declarations -O2 -std=c++11 -Wno-undefined-var-template -Wno-unused-local-typedef -MD -MT reduze/CMakeFiles/reduze.dir/streamutils.cpp.o -MF reduze/CMakeFiles/reduze.dir/streamutils.cpp.o.d -o reduze/CMakeFiles/reduze.dir/streamutils.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/streamutils.cpp
[2/109] /usr/bin/x86_64-gentoo-linux-musl-g++ -DHAVE_FERMAT -DHAVE_MPI -DNEW_GINAC -DPACKAGE_NAME=\"Reduze\" -DPACKAGE_VERSION=\"2.4\" -DUSE_HASH_TABLE -DUSE_OLD_SHIFTS   -pipe -march=native -fno-diagnostics-color -O2    -Wall -Wno-long-long -pedantic -Wno-deprecated-declarations -O2 -std=c++11 -Wno-undefined-var-template -Wno-unused-local-typedef -MD -MT reduze/CMakeFiles/reduze.dir/shiftoperators.cpp.o -MF reduze/CMakeFiles/reduze.dir/shiftoperators.cpp.o.d -o reduze/CMakeFiles/reduze.dir/shiftoperators.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/shiftoperators.cpp
[3/109] /usr/bin/x86_64-gentoo-linux-musl-g++ -DHAVE_FERMAT -DHAVE_MPI -DNEW_GINAC -DPACKAGE_NAME=\"Reduze\" -DPACKAGE_VERSION=\"2.4\" -DUSE_HASH_TABLE -DUSE_OLD_SHIFTS   -pipe -march=native -fno-diagnostics-color -O2    -Wall -Wno-long-long -pedantic -Wno-deprecated-declarations -O2 -std=c++11 -Wno-undefined-var-template -Wno-unused-local-typedef -MD -MT reduze/CMakeFiles/reduze.dir/topology.cpp.o -MF reduze/CMakeFiles/reduze.dir/topology.cpp.o.d -o reduze/CMakeFiles/reduze.dir/topology.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/topology.cpp
[4/109] /usr/bin/x86_64-gentoo-linux-musl-g++ -DHAVE_FERMAT -DHAVE_MPI -DNEW_GINAC -DPACKAGE_NAME=\"Reduze\" -DPACKAGE_VERSION=\"2.4\" -DUSE_HASH_TABLE -DUSE_OLD_SHIFTS   -pipe -march=native -fno-diagnostics-color -O2    -Wall -Wno-long-long -pedantic -Wno-deprecated-declarations -O2 -std=c++11 -Wno-undefined-var-template -Wno-unused-local-typedef -MD -MT reduze/CMakeFiles/reduze.dir/triconnected.cpp.o -MF reduze/CMakeFiles/reduze.dir/triconnected.cpp.o.d -o reduze/CMakeFiles/reduze.dir/triconnected.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/triconnected.cpp
[5/109] /usr/bin/x86_64-gentoo-linux-musl-g++ -DHAVE_FERMAT -DHAVE_MPI -DNEW_GINAC -DPACKAGE_NAME=\"Reduze\" -DPACKAGE_VERSION=\"2.4\" -DUSE_HASH_TABLE -DUSE_OLD_SHIFTS   -pipe -march=native -fno-diagnostics-color -O2    -Wall -Wno-long-long -pedantic -Wno-deprecated-declarations -O2 -std=c++11 -Wno-undefined-var-template -Wno-unused-local-typedef -MD -MT reduze/CMakeFiles/reduze.dir/sectormappings.cpp.o -MF reduze/CMakeFiles/reduze.dir/sectormappings.cpp.o.d -o reduze/CMakeFiles/reduze.dir/sectormappings.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/sectormappings.cpp
[6/109] /usr/bin/x86_64-gentoo-linux-musl-g++ -DHAVE_FERMAT -DHAVE_MPI -DNEW_GINAC -DPACKAGE_NAME=\"Reduze\" -DPACKAGE_VERSION=\"2.4\" -DUSE_HASH_TABLE -DUSE_OLD_SHIFTS   -pipe -march=native -fno-diagnostics-color -O2    -Wall -Wno-long-long -pedantic -Wno-deprecated-declarations -O2 -std=c++11 -Wno-undefined-var-template -Wno-unused-local-typedef -MD -MT reduze/CMakeFiles/reduze.dir/sector.cpp.o -MF reduze/CMakeFiles/reduze.dir/sector.cpp.o.d -o reduze/CMakeFiles/reduze.dir/sector.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/sector.cpp
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/sector.cpp: In function 'void Reduze::{anonymous}::find_UF_polynomials(const GiNaC::ex&, const lst&, const lst&, GiNaC::ex&, const lst&, GiNaC::ex*)':
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/sector.cpp:310:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  310 |     for (unsigned i = 0 ; i < p.nops(); ++i)
      |     ^~~
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/sector.cpp:313:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  313 |         ex QMinvQ = (Q.transpose().mul(M.inverse().mul(Q)))(0,0);
      |         ^~
At global scope:
cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics
cc1plus: note: unrecognized command-line option '-Wno-undefined-var-template' may have been intended to silence earlier diagnostics
[7/109] /usr/bin/x86_64-gentoo-linux-musl-g++ -DHAVE_FERMAT -DHAVE_MPI -DNEW_GINAC -DPACKAGE_NAME=\"Reduze\" -DPACKAGE_VERSION=\"2.4\" -DUSE_HASH_TABLE -DUSE_OLD_SHIFTS   -pipe -march=native -fno-diagnostics-color -O2    -Wall -Wno-long-long -pedantic -Wno-deprecated-declarations -O2 -std=c++11 -Wno-undefined-var-template -Wno-unused-local-typedef -MD -MT reduze/CMakeFiles/reduze.dir/gittag.cpp.o -MF reduze/CMakeFiles/reduze.dir/gittag.cpp.o.d -o reduze/CMakeFiles/reduze.dir/gittag.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4_build/reduze/gittag.cpp
[8/109] /usr/bin/x86_64-gentoo-linux-musl-g++    -Wall -pedantic -Wno-long-long -MD -MT tools/reduze1to2/CMakeFiles/reduze1to2.dir/main.cpp.o -MF tools/reduze1to2/CMakeFiles/reduze1to2.dir/main.cpp.o.d -o tools/reduze1to2/CMakeFiles/reduze1to2.dir/main.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/tools/reduze1to2/main.cpp
[9/109] : && /usr/bin/x86_64-gentoo-linux-musl-g++ -Wall -pedantic -Wno-long-long -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0    -rdynamic tools/reduze1to2/CMakeFiles/reduze1to2.dir/main.cpp.o -o tools/reduze1to2/reduze1to2   && :
[10/109] /usr/bin/x86_64-gentoo-linux-musl-g++ -DHAVE_FERMAT -DHAVE_MPI -DNEW_GINAC -DPACKAGE_NAME=\"Reduze\" -DPACKAGE_VERSION=\"2.4\" -DUSE_HASH_TABLE -DUSE_OLD_SHIFTS   -pipe -march=native -fno-diagnostics-color -O2    -Wall -Wno-long-long -pedantic -Wno-deprecated-declarations -O2 -std=c++11 -Wno-undefined-var-template -Wno-unused-local-typedef -MD -MT reduze/CMakeFiles/reduze.dir/job_reducefiles.cpp.o -MF reduze/CMakeFiles/reduze.dir/job_reducefiles.cpp.o.d -o reduze/CMakeFiles/reduze.dir/job_reducefiles.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job_reducefiles.cpp
FAILED: reduze/CMakeFiles/reduze.dir/job_reducefiles.cpp.o 
/usr/bin/x86_64-gentoo-linux-musl-g++ -DHAVE_FERMAT -DHAVE_MPI -DNEW_GINAC -DPACKAGE_NAME=\"Reduze\" -DPACKAGE_VERSION=\"2.4\" -DUSE_HASH_TABLE -DUSE_OLD_SHIFTS   -pipe -march=native -fno-diagnostics-color -O2    -Wall -Wno-long-long -pedantic -Wno-deprecated-declarations -O2 -std=c++11 -Wno-undefined-var-template -Wno-unused-local-typedef -MD -MT reduze/CMakeFiles/reduze.dir/job_reducefiles.cpp.o -MF reduze/CMakeFiles/reduze.dir/job_reducefiles.cpp.o.d -o reduze/CMakeFiles/reduze.dir/job_reducefiles.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job_reducefiles.cpp
In file included from /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job_reducefiles.h:14,
                 from /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job_reducefiles.cpp:11:
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job.h:77:34: error: 'MPI' has not been declared
   77 |         virtual void run_manager(MPI::Intracomm* comm, int jobcenter_rank);
      |                                  ^~~
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job.h:77:48: error: expected ',' or '...' before '*' token
   77 |         virtual void run_manager(MPI::Intracomm* comm, int jobcenter_rank);
      |                                                ^
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job.h:78:33: error: 'MPI' has not been declared
   78 |         virtual void run_worker(MPI::Intracomm* comm, int manager_rank);
      |                                 ^~~
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job.h:78:47: error: expected ',' or '...' before '*' token
   78 |         virtual void run_worker(MPI::Intracomm* comm, int manager_rank);
      |                                               ^
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job.h:79:47: error: 'MPI' has not been declared
   79 |         virtual void set_communication_params(MPI::Intracomm* comm, int jobcenter_rank, int manager_rank);
      |                                               ^~~
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job.h:79:61: error: expected ',' or '...' before '*' token
   79 |         virtual void set_communication_params(MPI::Intracomm* comm, int jobcenter_rank, int manager_rank);
      |                                                             ^
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job.h:130:9: error: 'MPI' does not name a type
  130 |         MPI::Intracomm* communicator_;
      |         ^~~
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job.h: In constructor 'Reduze::Job::Job()':
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job.h:57:51: error: class 'Reduze::Job' does not have any field named 'communicator_'
   57 |         , jobcenter_rank_(-1), manager_rank_(-1), communicator_(0)
      |                                                   ^~~~~~~~~~~~~
In file included from /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job_reducefiles.cpp:16:
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job_runreduction.h: At global scope:
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job_runreduction.h:97:34: error: 'MPI' has not been declared
   97 |         virtual void run_manager(MPI::Intracomm* comm, int jobcenter_rank);
      |                                  ^~~
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job_runreduction.h:97:48: error: expected ',' or '...' before '*' token
   97 |         virtual void run_manager(MPI::Intracomm* comm, int jobcenter_rank);
      |                                                ^
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job_runreduction.h:98:33: error: 'MPI' has not been declared
   98 |         virtual void run_worker(MPI::Intracomm* comm, int manager_rank);
      |                                 ^~~
/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/job_runreduction.h:98:47: error: expected ',' or '...' before '*' token
   98 |         virtual void run_worker(MPI::Intracomm* comm, int manager_rank);
      |                                               ^
cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics
cc1plus: note: unrecognized command-line option '-Wno-undefined-var-template' may have been intended to silence earlier diagnostics
[11/109] /usr/bin/x86_64-gentoo-linux-musl-g++ -DHAVE_FERMAT -DHAVE_MPI -DNEW_GINAC -DPACKAGE_NAME=\"Reduze\" -DPACKAGE_VERSION=\"2.4\" -DUSE_HASH_TABLE -DUSE_OLD_SHIFTS   -pipe -march=native -fno-diagnostics-color -O2    -Wall -Wno-long-long -pedantic -Wno-deprecated-declarations -O2 -std=c++11 -Wno-undefined-var-template -Wno-unused-local-typedef -MD -MT reduze/CMakeFiles/reduze.dir/yamlconfigurable.cpp.o -MF reduze/CMakeFiles/reduze.dir/yamlconfigurable.cpp.o.d -o reduze/CMakeFiles/reduze.dir/yamlconfigurable.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/yamlconfigurable.cpp
[12/109] /usr/bin/x86_64-gentoo-linux-musl-g++ -DHAVE_FERMAT -DHAVE_MPI -DNEW_GINAC -DPACKAGE_NAME=\"Reduze\" -DPACKAGE_VERSION=\"2.4\" -DUSE_HASH_TABLE -DUSE_OLD_SHIFTS   -pipe -march=native -fno-diagnostics-color -O2    -Wall -Wno-long-long -pedantic -Wno-deprecated-declarations -O2 -std=c++11 -Wno-undefined-var-template -Wno-unused-local-typedef -MD -MT reduze/CMakeFiles/reduze.dir/yamlutils.cpp.o -MF reduze/CMakeFiles/reduze.dir/yamlutils.cpp.o.d -o reduze/CMakeFiles/reduze.dir/yamlutils.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/yamlutils.cpp
[13/109] /usr/bin/x86_64-gentoo-linux-musl-g++ -DHAVE_FERMAT -DHAVE_MPI -DNEW_GINAC -DPACKAGE_NAME=\"Reduze\" -DPACKAGE_VERSION=\"2.4\" -DUSE_HASH_TABLE -DUSE_OLD_SHIFTS   -pipe -march=native -fno-diagnostics-color -O2    -Wall -Wno-long-long -pedantic -Wno-deprecated-declarations -O2 -std=c++11 -Wno-undefined-var-template -Wno-unused-local-typedef -MD -MT reduze/CMakeFiles/reduze.dir/undirectedgraph.cpp.o -MF reduze/CMakeFiles/reduze.dir/undirectedgraph.cpp.o.d -o reduze/CMakeFiles/reduze.dir/undirectedgraph.cpp.o -c /var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4/reduze/undirectedgraph.cpp
ninja: build stopped: subcommand failed.
 * ERROR: sci-physics/reduze-2.4::gentoo failed (compile phase):
 *   ninja -v -j4 -l0 all failed
 * 
 * Call stack:
 *     ebuild.sh, line  127:  Called src_compile
 *   environment, line 2090:  Called cmake_src_compile 'all'
 *   environment, line  815:  Called cmake_build 'all'
 *   environment, line  784:  Called eninja 'all'
 *   environment, line 1267:  Called die
 * The specific snippet of code:
 *       "$@" || die "${nonfatal_args[@]}" "${*} failed"
 * 
 * If you need support, post the output of `emerge --info '=sci-physics/reduze-2.4::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-physics/reduze-2.4::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-physics:reduze-2.4:20211220-050318.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-physics/reduze-2.4/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-physics/reduze-2.4/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4_build'
 * S: '/var/tmp/portage/sci-physics/reduze-2.4/work/reduze-2.4'