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Gentoo's Bugzilla – Attachment 757208 Details for
Bug 828021
sci-libs/mkl-2020.4.304: INTEL MKL ERROR: /usr/lib64/libmkl_vml_def.so: undefined symbol: mkl_lapack_dspevd.
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/var/log/portage/dev-python:numexpr-2.8.0:20211202-141309.log
dev-python:numexpr-2.8.0:20211202-141309.log (text/plain), 13.50 KB, created by
Michał Górny
on 2021-12-02 14:20:29 UTC
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Description:
/var/log/portage/dev-python:numexpr-2.8.0:20211202-141309.log
Filename:
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Creator:
Michał Górny
Created:
2021-12-02 14:20:29 UTC
Size:
13.50 KB
patch
obsolete
>[32m * [39;49;00mPackage: dev-python/numexpr-2.8.0 >[32m * [39;49;00mRepository: gentoo >[32m * [39;49;00mMaintainer: python@gentoo.org sci@gentoo.org >[32m * [39;49;00mUSE: abi_x86_64 amd64 elibc_glibc kernel_linux mkl python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 userland_GNU >[32m * [39;49;00mFEATURES: ccache network-sandbox preserve-libs sandbox test userpriv usersandbox >>>> Unpacking source... >>>> Unpacking numexpr-2.8.0.tar.gz to /tmp/portage/dev-python/numexpr-2.8.0/work >>>> Source unpacked in /tmp/portage/dev-python/numexpr-2.8.0/work >>>> Preparing source in /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0 ... >>>> Source prepared. >>>> Configuring source in /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0 ... >>>> Source configured. >>>> Compiling source in /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0 ... > [32m*[0m python3_8: running distutils-r1_run_phase distutils-r1_python_compile >python3.8 setup.py build -j 12 >running build >running build_py >creating /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/lib/numexpr >copying numexpr/version.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/lib/numexpr >copying numexpr/utils.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/lib/numexpr >copying numexpr/necompiler.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/lib/numexpr >copying numexpr/expressions.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/lib/numexpr >copying numexpr/cpuinfo.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/lib/numexpr >copying numexpr/__init__.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/lib/numexpr >creating /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/lib/numexpr/tests >copying numexpr/tests/test_numexpr.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/lib/numexpr/tests >copying numexpr/tests/__init__.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/lib/numexpr/tests >warning: build_py: byte-compiling is disabled, skipping. > >running build_ext >building 'numexpr.interpreter' extension >creating /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/temp.linux-x86_64-3.8 >creating /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/temp.linux-x86_64-3.8/numexpr >x86_64-pc-linux-gnu-g++-11.2.1 -march=znver2 --param l1-cache-size=32 --param l1-cache-line-size=64 -O2 -pipe -frecord-gcc-switches -fPIC -DUSE_VML -I/usr/lib/python3.8/site-packages/numpy/core/include -Iframestream -I/usr/include/mkl -I/usr/include/python3.8 -c numexpr/interpreter.cpp -o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/temp.linux-x86_64-3.8/numexpr/interpreter.o >x86_64-pc-linux-gnu-g++-11.2.1 -march=znver2 --param l1-cache-size=32 --param l1-cache-line-size=64 -O2 -pipe -frecord-gcc-switches -fPIC -DUSE_VML -I/usr/lib/python3.8/site-packages/numpy/core/include -Iframestream -I/usr/include/mkl -I/usr/include/python3.8 -c numexpr/module.cpp -o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/temp.linux-x86_64-3.8/numexpr/module.o >x86_64-pc-linux-gnu-g++-11.2.1 -march=znver2 --param l1-cache-size=32 --param l1-cache-line-size=64 -O2 -pipe -frecord-gcc-switches -fPIC -DUSE_VML -I/usr/lib/python3.8/site-packages/numpy/core/include -Iframestream -I/usr/include/mkl -I/usr/include/python3.8 -c numexpr/numexpr_object.cpp -o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/temp.linux-x86_64-3.8/numexpr/numexpr_object.o >x86_64-pc-linux-gnu-g++-11.2.1 -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -march=znver2 --param l1-cache-size=32 --param l1-cache-line-size=64 -O2 -pipe -frecord-gcc-switches /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/temp.linux-x86_64-3.8/numexpr/interpreter.o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/temp.linux-x86_64-3.8/numexpr/module.o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/temp.linux-x86_64-3.8/numexpr/numexpr_object.o -L/usr/lib64/lapack/mkl -L/usr/lib64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl -llapack -o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/lib/numexpr/interpreter.cpython-38-x86_64-linux-gnu.so > [32m*[0m python3_9: running distutils-r1_run_phase distutils-r1_python_compile >python3.9 setup.py build -j 12 >running build >running build_py >creating /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/lib/numexpr >copying numexpr/version.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/lib/numexpr >copying numexpr/utils.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/lib/numexpr >copying numexpr/necompiler.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/lib/numexpr >copying numexpr/expressions.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/lib/numexpr >copying numexpr/cpuinfo.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/lib/numexpr >copying numexpr/__init__.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/lib/numexpr >creating /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/lib/numexpr/tests >copying numexpr/tests/test_numexpr.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/lib/numexpr/tests >copying numexpr/tests/__init__.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/lib/numexpr/tests >warning: build_py: byte-compiling is disabled, skipping. > >running build_ext >building 'numexpr.interpreter' extension >creating /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/temp.linux-x86_64-3.9 >creating /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/temp.linux-x86_64-3.9/numexpr >x86_64-pc-linux-gnu-g++-11.2.1 -march=znver2 --param l1-cache-size=32 --param l1-cache-line-size=64 -O2 -pipe -frecord-gcc-switches -fPIC -DUSE_VML -I/usr/lib/python3.9/site-packages/numpy/core/include -Iframestream -I/usr/include/mkl -I/usr/include/python3.9 -c numexpr/interpreter.cpp -o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/temp.linux-x86_64-3.9/numexpr/interpreter.o >x86_64-pc-linux-gnu-g++-11.2.1 -march=znver2 --param l1-cache-size=32 --param l1-cache-line-size=64 -O2 -pipe -frecord-gcc-switches -fPIC -DUSE_VML -I/usr/lib/python3.9/site-packages/numpy/core/include -Iframestream -I/usr/include/mkl -I/usr/include/python3.9 -c numexpr/module.cpp -o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/temp.linux-x86_64-3.9/numexpr/module.o >x86_64-pc-linux-gnu-g++-11.2.1 -march=znver2 --param l1-cache-size=32 --param l1-cache-line-size=64 -O2 -pipe -frecord-gcc-switches -fPIC -DUSE_VML -I/usr/lib/python3.9/site-packages/numpy/core/include -Iframestream -I/usr/include/mkl -I/usr/include/python3.9 -c numexpr/numexpr_object.cpp -o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/temp.linux-x86_64-3.9/numexpr/numexpr_object.o >x86_64-pc-linux-gnu-g++-11.2.1 -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -march=znver2 --param l1-cache-size=32 --param l1-cache-line-size=64 -O2 -pipe -frecord-gcc-switches /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/temp.linux-x86_64-3.9/numexpr/interpreter.o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/temp.linux-x86_64-3.9/numexpr/module.o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/temp.linux-x86_64-3.9/numexpr/numexpr_object.o -L/usr/lib64/lapack/mkl -L/usr/lib64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl -llapack -o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_9/lib/numexpr/interpreter.cpython-39-x86_64-linux-gnu.so > [32m*[0m python3_10: running distutils-r1_run_phase distutils-r1_python_compile >python3.10 setup.py build -j 12 >running build >running build_py >creating /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/lib/numexpr >copying numexpr/version.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/lib/numexpr >copying numexpr/utils.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/lib/numexpr >copying numexpr/necompiler.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/lib/numexpr >copying numexpr/expressions.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/lib/numexpr >copying numexpr/cpuinfo.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/lib/numexpr >copying numexpr/__init__.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/lib/numexpr >creating /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/lib/numexpr/tests >copying numexpr/tests/test_numexpr.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/lib/numexpr/tests >copying numexpr/tests/__init__.py -> /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/lib/numexpr/tests >warning: build_py: byte-compiling is disabled, skipping. > >running build_ext >building 'numexpr.interpreter' extension >creating /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/temp.linux-x86_64-3.10 >creating /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/temp.linux-x86_64-3.10/numexpr >x86_64-pc-linux-gnu-g++-11.2.1 -march=znver2 --param l1-cache-size=32 --param l1-cache-line-size=64 -O2 -pipe -frecord-gcc-switches -fPIC -DUSE_VML -I/usr/lib/python3.10/site-packages/numpy/core/include -Iframestream -I/usr/include/mkl -I/usr/include/python3.10 -c numexpr/interpreter.cpp -o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/temp.linux-x86_64-3.10/numexpr/interpreter.o >x86_64-pc-linux-gnu-g++-11.2.1 -march=znver2 --param l1-cache-size=32 --param l1-cache-line-size=64 -O2 -pipe -frecord-gcc-switches -fPIC -DUSE_VML -I/usr/lib/python3.10/site-packages/numpy/core/include -Iframestream -I/usr/include/mkl -I/usr/include/python3.10 -c numexpr/module.cpp -o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/temp.linux-x86_64-3.10/numexpr/module.o >x86_64-pc-linux-gnu-g++-11.2.1 -march=znver2 --param l1-cache-size=32 --param l1-cache-line-size=64 -O2 -pipe -frecord-gcc-switches -fPIC -DUSE_VML -I/usr/lib/python3.10/site-packages/numpy/core/include -Iframestream -I/usr/include/mkl -I/usr/include/python3.10 -c numexpr/numexpr_object.cpp -o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/temp.linux-x86_64-3.10/numexpr/numexpr_object.o >x86_64-pc-linux-gnu-g++-11.2.1 -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -march=znver2 --param l1-cache-size=32 --param l1-cache-line-size=64 -O2 -pipe -frecord-gcc-switches /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/temp.linux-x86_64-3.10/numexpr/interpreter.o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/temp.linux-x86_64-3.10/numexpr/module.o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/temp.linux-x86_64-3.10/numexpr/numexpr_object.o -L/usr/lib64/lapack/mkl -L/usr/lib64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl -llapack -o /tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_10/lib/numexpr/interpreter.cpython-310-x86_64-linux-gnu.so >>>> Source compiled. >>>> Test phase: dev-python/numexpr-2.8.0 > [32m*[0m python3_8: running distutils-r1_run_phase python_test >....INTEL MKL ERROR: /usr/lib64/libmkl_vml_def.so: undefined symbol: mkl_lapack_dspevd. >Intel MKL FATAL ERROR: cannot load libmkl_vml_def.so. > [31;01m*[0m ERROR: dev-python/numexpr-2.8.0::gentoo failed (test phase): > [31;01m*[0m (no error message) > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 127: Called src_test > [31;01m*[0m environment, line 2937: Called distutils-r1_src_test > [31;01m*[0m environment, line 1228: Called _distutils-r1_run_foreach_impl 'python_test' > [31;01m*[0m environment, line 490: Called python_foreach_impl 'distutils-r1_run_phase' 'python_test' > [31;01m*[0m environment, line 2533: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' > [31;01m*[0m environment, line 2055: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' > [31;01m*[0m environment, line 2053: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_test' > [31;01m*[0m environment, line 782: Called distutils-r1_run_phase 'python_test' > [31;01m*[0m environment, line 1167: Called python_test > [31;01m*[0m environment, line 2866: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m "${EPYTHON}" -c "import sys,numexpr; sys.exit(0 if numexpr.test().wasSuccessful() else 1)" || die; > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=dev-python/numexpr-2.8.0::gentoo'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=dev-python/numexpr-2.8.0::gentoo'`. > [31;01m*[0m The complete build log is located at '/var/log/portage/dev-python:numexpr-2.8.0:20211202-141309.log'. > [31;01m*[0m For convenience, a symlink to the build log is located at '/tmp/portage/dev-python/numexpr-2.8.0/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/tmp/portage/dev-python/numexpr-2.8.0/temp/environment'. > [31;01m*[0m Working directory: '/tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0-python3_8/lib' > [31;01m*[0m S: '/tmp/portage/dev-python/numexpr-2.8.0/work/numexpr-2.8.0'
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bug 828021
: 757208