sci-visualization:gwyddion-2.56:20211025-060605.log

sci-visualization:gwyddion-2.56:20211025-060605.log (text/plain), 18.26 KB, created by Toralf Förster on 2021-10-25 08:08:26 UTC

 * Package:    sci-visualization/gwyddion-2.56
 * Repository: gentoo
 * Maintainer: [e-mail] [e-mail]
 * USE:        X abi_x86_64 amd64 elibc_glibc gnome hdf5 kernel_linux nls openexr perl userland_GNU xml
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking gwyddion-2.56.tar.xz to /var/tmp/portage/sci-visualization/gwyddion-2.56/work
>>> Source unpacked in /var/tmp/portage/sci-visualization/gwyddion-2.56/work
>>> Preparing source in /var/tmp/portage/sci-visualization/gwyddion-2.56/work/gwyddion-2.56 ...
 * Applying gwyddion-2.56-automagic.patch ...
 [ ok ]
 * Running eautoreconf in '/var/tmp/portage/sci-visualization/gwyddion-2.56/work/gwyddion-2.56' ...
 * Running 'gtkdocize --copy' ...
 [ ok ]
 * Running 'libtoolize --install --copy --force --automake' ...
 [ ok ]
 * Running 'aclocal -I m4' ...
 [ ok ]
 * Running 'autoconf --force' ...
 [ ok ]
 * Running 'autoheader' ...
 [ ok ]
 * Running 'automake --add-missing --copy --force-missing' ...
 [ ok ]
 * Running elibtoolize in: gwyddion-2.56/
 *   Applying portage/1.2.0 patch ...
 *   Applying sed/1.5.6 patch ...
 *   Applying as-needed/2.4.3 patch ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-visualization/gwyddion-2.56/work/gwyddion-2.56 ...
 * econf: updating gwyddion-2.56/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating gwyddion-2.56/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/gwyddion-2.56 --htmldir=/usr/share/doc/gwyddion-2.56/html --libdir=/usr/lib64 --disable-rpath --without-kde4-thumbnailer --disable-gtk-doc --enable-nls --with-hdf5 --disable-pygwy --without-cfitsio --with-perl --without-python --without-ruby --without-gl --with-exr --without-gtksourceview --with-libxml2 --with-x --with-zip=libzip
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether make supports nested variables... (cached) yes
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to enable C11 features... none needed
checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
checking whether the compiler supports GNU C++... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking for x86_64-pc-linux-gnu-g++ option to enable C++11 features... none needed
checking dependency style of x86_64-pc-linux-gnu-g++... none
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B
checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-dlltool... dlltool
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking for archiver @FILE support... @
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for x86_64-pc-linux-gnu-mt... no
checking for mt... mt
checking if mt is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for xsltproc... xsltproc
checking for epydoc... no
checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for gtk-doc... yes
checking for gtkdoc-check... gtkdoc-check.test
checking for gtkdoc-check... /usr/bin/gtkdoc-check
checking for gtkdoc-rebase... /usr/bin/gtkdoc-rebase
checking for gtkdoc-mkpdf... /usr/bin/gtkdoc-mkpdf
checking whether to build gtk-doc documentation... no
checking for GTKDOC_DEPS... yes
checking size of void*... 8
checking for native Microsoft Windows... no
checking for Darwin... no
checking for glib-mkenums... glib-mkenums
checking for glib-genmarshal... glib-genmarshal
checking for update-desktop-database... update-desktop-database
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checking whether inkscape has 1.0-style command line options... yes
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checking for a Python interpreter with version >= 2.4... python2
checking for python2... /usr/bin/python2
checking for python2 version... 2.7
checking for python2 platform... linux2
checking for GNU default python2 prefix... ${prefix}
checking for GNU default python2 exec_prefix... ${exec_prefix}
checking for python2 script directory (pythondir)... ${PYTHON_PREFIX}/lib64/python2.7/site-packages
checking for python2 extension module directory (pyexecdir)... ${PYTHON_EXEC_PREFIX}/lib64/python2.7/site-packages
checking size of pid_t... 4
checking for perl5... no
checking for perl... /usr/bin/perl
checking for pod2man... /usr/bin/pod2man
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checking if ruby version >= 1.8... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Wno-format-zero-length... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Wno-system-headers... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Wno-pointer-sign... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Wno-unused-parameter... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Werror=implicit-function-declaration... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Werror=return-type... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Wdeclaration-after-statement... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Wredundant-decls... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Wno-missing-field-initializers... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Wno-implicit-fallthrough... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Wno-cast-function-type... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Wno-stringop-truncation... yes
checking whether x86_64-pc-linux-gnu-gcc knows -Wno-deprecated... yes
checking whether x86_64-pc-linux-gnu-gcc knows -ffast-math... yes
checking whether x86_64-pc-linux-gnu-gcc knows -O3... yes
checking whether x86_64-pc-linux-gnu-gcc knows -fno-strict-aliasing... yes
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for GTK_BASE... yes
checking for GOBJECT... yes
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checking for cos in -lm... yes
checking for Gdk target... x11
checking for XmuClientWindow in -lXmu... yes
checking for X11/Xmu/WinUtil.h... yes
checking for GTK... yes
checking for FFTW3... yes
checking for x86_64-pc-linux-gnu-gcc option to support OpenMP... -fopenmp
checking whether x86_64-pc-linux-gnu-gcc supports OpenMP 3.1... yes
checking for FFTW3 library with OpenMP support... yes
checking for inflate in -lz... yes
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checking for BZ2_bzopen in -lbz2... yes
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checking for LIBZIP... yes
checking for PNG... yes
checking for WEBP... yes
checking if the C++ compiler is a real thing... yes
./configure: line 23901: xyes: command not found
checking for x86_64-pc-linux-gnu-h5cc... no
checking for h5cc... /usr/bin/h5cc
checking for HDF5 libraries... x86_64-pc-linux-gnu-gcc: error: unrecognized command-line option '-show'
x86_64-pc-linux-gnu-gcc: error: unrecognized command-line option '-show'
x86_64-pc-linux-gnu-gcc: error: unrecognized command-line option '-showconfig'; did you mean '-mpconfig'?
x86_64-pc-linux-gnu-gcc: error: unrecognized command-line option '-showconfig'; did you mean '-mpconfig'?
x86_64-pc-linux-gnu-gcc: error: unrecognized command-line option '-showconfig'; did you mean '-mpconfig'?
yes (version )
checking for hdf5.h... no
checking for H5Fcreate in -lhdf5... no
configure: WARNING: Unable to compile HDF5 test program
checking for main in -lhdf5_hl... no
checking for XML2... yes
checking for UNIQUE... yes
checking for anyone actually reading this nonsense... no
checking for stdbool.h... yes
checking for GL/glext.h... yes
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checking whether NLS is requested... yes
checking for msgfmt... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/gmsgfmt
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checking for msgmerge... /usr/bin/msgmerge
checking for ld... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking for shared library run path origin... done
checking 32-bit host C ABI... no
checking for ELF binary format... yes
checking for the common suffixes of directories in the library search path... lib,lib,lib64
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
checking whether we are using the GNU C Library 2.1 or newer... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating m4/Makefile
config.status: creating app/Makefile
config.status: creating libdraw/Makefile
config.status: creating libgwyddion/Makefile
config.status: creating libgwyddion/gwyversion.h
config.status: creating libgwydgets/Makefile
config.status: creating libgwymodule/Makefile
config.status: creating libprocess/Makefile
config.status: creating gwyddion/Makefile
config.status: creating modules/Makefile
config.status: creating modules/file/Makefile
config.status: creating modules/graph/Makefile
config.status: creating modules/layer/Makefile
config.status: creating modules/process/Makefile
config.status: creating modules/pygwy/Makefile
config.status: creating modules/tools/Makefile
config.status: creating modules/volume/Makefile
config.status: creating modules/xyz/Makefile
config.status: creating plugins/Makefile
config.status: creating pixmaps/Makefile
config.status: creating pixmaps/src/Makefile
config.status: creating po/Makefile.in
config.status: creating perl/Makefile
config.status: creating python/Makefile
config.status: creating ruby/Makefile
config.status: creating data/Makefile
config.status: creating data/glmaterials/Makefile
config.status: creating data/gradients/Makefile
config.status: creating utils/Makefile
config.status: creating utils/bundler
config.status: creating utils/mkosxlauncher
config.status: creating thumbnailer/Makefile
config.status: creating devel-docs/Makefile
config.status: creating devel-docs/libgwyapp/Makefile
config.status: creating devel-docs/libgwyapp/releaseinfo.xml
config.status: creating devel-docs/libgwyddion/Makefile
config.status: creating devel-docs/libgwyddion/releaseinfo.xml
config.status: creating devel-docs/libgwydgets/Makefile
config.status: creating devel-docs/libgwydgets/releaseinfo.xml
config.status: creating devel-docs/libgwydraw/Makefile
config.status: creating devel-docs/libgwydraw/releaseinfo.xml
config.status: creating devel-docs/libgwymodule/Makefile
config.status: creating devel-docs/libgwymodule/releaseinfo.xml
config.status: creating devel-docs/libgwyprocess/Makefile
config.status: creating devel-docs/libgwyprocess/releaseinfo.xml
config.status: creating gwyddion.spec
config.status: creating data/gwyddion.pc
config.status: creating data/gwyddion.nsit
config.status: creating data/mingw-gwyddion-libs.spec
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing po-directories commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
config.status: executing gwyconfig.h commands
=================================================================
Configuration Summary:
  OpenGL 3D widgets:                 no
  OpenMP parallelization:            yes
  Remote control:                    unique
  Optional file formats included:    APE DAX, Anasys, BigTIFF, Createc/zlib, Ergo, JPK force, NRRD/bzip2, NRRD/zlib, NanoObserver, NanoScanTech, OlympusPOIR, OpenEXR, OpenGPS, PGM/16bit, PLUx, PNG/16bit, RHK SM4 PRM meta/zlib, SPML, SPMxFormat, WebP
  Optional file formats excluded:    FITS
  Module linking:                    bundling=yes, bloat=no
  Thumbnailers to build:             manual
  Python interface (pygwy):          no
  Desktop integration files go to:   prefix
=================================================================
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-visualization/gwyddion-2.56/work/gwyddion-2.56 ...
make -j4 
Makefile:331: *** missing separator.  Stop.
 * ERROR: sci-visualization/gwyddion-2.56::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-visualization/gwyddion-2.56::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-visualization/gwyddion-2.56::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-visualization:gwyddion-2.56:20211025-060605.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-visualization/gwyddion-2.56/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-visualization/gwyddion-2.56/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-visualization/gwyddion-2.56/work/gwyddion-2.56'
 * S: '/var/tmp/portage/sci-visualization/gwyddion-2.56/work/gwyddion-2.56'