full issue example

raw (text/plain), 6.17 KB, created by Horea Christian on 2021-10-13 06:04:16 UTC

decohost ~ # emerge -av1 spyking-circus

 * IMPORTANT: 2 news items need reading for repository 'gentoo'.
 * Use eselect news read to view new items.


These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  N     ] dev-python/colorama-0.4.4::gentoo  USE="-examples -test" PYTHON_TARGETS="python3_9 -pypy3 -python3_8 -python3_10" 107 KiB
[ebuild  N     ] dev-python/scikit-build-0.12.0::gentoo  USE="-doc -test" PYTHON_TARGETS="python3_9 -python3_8 -python3_10" 135 KiB
[ebuild  N     ] sys-libs/libunwind-1.5.0-r1:0/8::gentoo  USE="zlib -debug -debug-frame -doc -libatomic -lzma -static-libs" ABI_X86="(64) -32 (-x32)" 858 KiB
[ebuild  N     ] sys-apps/keyutils-1.6.3:0/1.9::gentoo  USE="(split-usr) -static -static-libs -test" ABI_X86="(64) -32 (-x32)" 134 KiB
[ebuild  N     ] net-libs/rpcsvc-proto-1.4.2::gentoo  61 KiB
[ebuild  N     ] sys-apps/hwloc-2.5.0:0/15::gentoo  USE="X cairo cpuid pci svg udev xml -cuda -debug -gl -netloc -nvml -static-libs" ABI_X86="(64) -32 (-x32)" 6,532 KiB
[ebuild  N     ] dev-python/blosc-1.10.5::gentoo  USE="-test" PYTHON_TARGETS="python3_9 -python3_8 -python3_10" 1,534 KiB
[ebuild  N     ] net-nds/rpcbind-1.2.6::gentoo  USE="tcpd -debug -remotecalls (-selinux) -systemd -warmstarts" 122 KiB
[ebuild  N     ] sys-cluster/openmpi-4.0.5-r1::gentoo  USE="fortran ipv6 -cma -cuda -cxx -heterogeneous -java -libompitrace -peruse -romio" ABI_X86="(64) -32 (-x32)" OPENMPI_FABRICS="-knem -ofed -psm" OPENMPI_OFED_FEATURES="-control-hdr-padding -dynamic-sl -rdmacm -udcm" OPENMPI_RM="-pbs -slurm" 9,524 KiB
[ebuild  N     ] net-fs/nfs-utils-2.5.4-r2::gentoo  USE="ipv6 libmount nfsidmap nfsv4 tcpd uuid -caps -junction -kerberos -ldap -nfsdcld -nfsv41 -sasl (-selinux)" 922 KiB
[ebuild  N     ] virtual/mpi-2.0-r5::gentoo  USE="fortran -cxx -romio -threads" ABI_X86="(64) -32 (-x32)" 0 KiB
[ebuild  N     ] sys-cluster/mpich-3.3-r1::gentoo  USE="cxx fortran romio -doc -mpi-threads -threads" ABI_X86="(64) -32 (-x32)" 26,572 KiB
[ebuild  N     ] dev-python/mpi4py-3.0.3::gentoo  USE="-doc -examples -test" PYTHON_TARGETS="python3_9 -python3_8" 1,396 KiB
[ebuild  N     ] sci-libs/spyking-circus-1.0.6::science  USE="-doc -test" PYTHON_TARGETS="python3_9 -python3_8" 4,702 KiB
[blocks B      ] sys-cluster/openmpi ("sys-cluster/openmpi" is soft blocking sys-cluster/mpich-3.3-r1)
[blocks B      ] sys-cluster/mpich ("sys-cluster/mpich" is soft blocking sys-cluster/openmpi-4.0.5-r1)

Total: 14 packages (14 new), Size of downloads: 52,594 KiB
Conflict: 2 blocks (2 unsatisfied)

 * Error: The above package list contains packages which cannot be
 * installed at the same time on the same system.

  (sys-cluster/openmpi-4.0.5-r1:0/0::gentoo, ebuild scheduled for merge) pulled in by
    >=sys-cluster/openmpi-1.10.2-r1[abi_x86_32(-)?,abi_x86_64(-)?,abi_x86_x32(-)?,abi_mips_n32(-)?,abi_mips_n64(-)?,abi_mips_o32(-)?,abi_s390_32(-)?,abi_s390_64(-)?,cxx?,fortran?,romio?,threads(+)?] (>=sys-cluster/openmpi-1.10.2-r1[abi_x86_64(-),fortran]) required by (virtual/mpi-2.0-r5:0/0::gentoo, ebuild scheduled for merge) USE="fortran -cxx -romio -threads" ABI_X86="(64) -32 (-x32)"

  (sys-cluster/mpich-3.3-r1:0/0::gentoo, ebuild scheduled for merge) pulled in by
    >=sys-cluster/mpich-2.0 required by (sci-libs/spyking-circus-1.0.6:0/0::science, ebuild scheduled for merge) USE="-doc -test" ABI_X86="(64)" PYTHON_TARGETS="python3_9 -python3_8"


For more information about Blocked Packages, please refer to the following
section of the Gentoo Linux x86 Handbook (architecture is irrelevant):

https://wiki.gentoo.org/wiki/Handbook:X86/Working/Portage#Blocked_packages

decohost ~ # eix openmpi
* sys-cluster/openmpi
     Available versions:  1.4.5^t (~)1.6.5-r1 (~)1.7.5-r1 (~)1.8.8 (~)1.10.7 2.0.4 (~)2.1.6 (~)3.0.4 (~)3.1.4 (~)4.0.2 (~)4.0.3 (~)4.0.4 (~)4.0.5 (~)4.0.5-r1 {cma cuda (+)cxx fortran heterogeneous ipv6 java libompitrace mpi-threads numa pbs peruse romio threads vt ABI_MIPS="n32 n64 o32" ABI_S390="32 64" ABI_X86="32 64 x32" ELIBC="FreeBSD" OPENMPI_FABRICS="dapl knem ofed psm sctp" OPENMPI_OFED_FEATURES="connectx-xrc control-hdr-padding dynamic-sl failover rdmacm udcm" OPENMPI_RM="pbs slurm"}
     Homepage:            https://www.open-mpi.org
     Description:         A high-performance message passing library (MPI)

decohost ~ # eix mpich
* sys-cluster/mpich
     Available versions:  3.0.4 (~)3.3-r1 {+cxx doc fortran mpi-threads (+)romio threads ABI_MIPS="n32 n64 o32" ABI_S390="32 64" ABI_X86="32 64 x32"}
     Homepage:            http://www.mpich.org/
     Description:         A high performance and portable MPI implementation

* sys-cluster/mpich2
     Available versions:  1.5 {+cxx doc fortran mpi-threads romio threads}
     Homepage:            http://www.mcs.anl.gov/research/projects/mpich2/index.php
     Description:         A high performance and portable MPI implementation

Found 2 matches
decohost ~ # cat /var/db/repos/science/sci-libs/spyking-circus/spyking-circus-1.0.6.ebuild
# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2

EAPI=7

PYTHON_COMPAT=( python3_{7..9} )

inherit distutils-r1

DESCRIPTION="Fast spike sorting by template matching"
HOMEPAGE="https://github.com/spyking-circus/spyking-circus/"
SRC_URI="https://github.com/spyking-circus/spyking-circus/archive/${PV}.tar.gz -> ${P}.tar.gz"

LICENSE="CeCILL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"

# TODO: Fix this
RESTRICT="test"

RDEPEND="
	>=dev-python/blosc-1.8[${PYTHON_USEDEP}]
	>=dev-python/colorama-0.4.1[${PYTHON_USEDEP}]
	>=dev-python/cython-0.29.14[${PYTHON_USEDEP}]
	>=dev-python/h5py-2.9.0[${PYTHON_USEDEP}]
	>=dev-python/matplotlib-2.2.4[${PYTHON_USEDEP}]
	>=dev-python/mpi4py-3.0.0[${PYTHON_USEDEP}]
	>=dev-python/numpy-1.17.4[${PYTHON_USEDEP}]
	>=dev-python/pandas-0.21[${PYTHON_USEDEP}]
	>=dev-python/psutil-5.6.7[${PYTHON_USEDEP}]
	>=dev-python/statsmodels-0.10.1[${PYTHON_USEDEP}]
	>=dev-python/tqdm-4.40.0[${PYTHON_USEDEP}]
	>=dev-python/scipy-1.3.1[${PYTHON_USEDEP}]
	>=sci-libs/scikit-learn-0.21.3
	|| ( <=sys-cluster/openmpi-3.0.0 >=sys-cluster/mpich-2.0 )
"
DEPEND="${RDEPEND}"

distutils_enable_sphinx docs_sphinx --no-autodoc
distutils_enable_tests --install pytest