* Package: sys-cluster/parallel-netcdf-1.12.2 * Repository: guru * Maintainer: lssndrbarbieri@gmail.com * Upstream: https://github.com/Parallel-NetCDF/PnetCDF/issues * USE: abi_x86_64 amd64 cxx elibc_glibc erange-fill file-sync fortran kernel_linux relax-coord-bound userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox @@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; This ebuild was merged at the following commit: https://github.com/gentoo/gentoo/commit/fd8ac3f9f7aed7cc9a1241435a75bf4dd3bbb2a9 (Thu Sep 30 19:02:40 UTC 2021) @@@@@ END @@@@@ @@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; This ebuild was merged at the following commit: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=84eaa8c8ca80bb42a09cca52e2e74ade19c87a02 (Thu Sep 30 19:16:26 UTC 2021) @@@@@ END @@@@@ @@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ This ebuild was merged (directly or as a dependency) because of the following commit: https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=0b5d0f6dc01ee66b5ec4f4e22a971c055948558d @@@@@ END @@@@@ ################## # emerge --info: # ################## Portage 3.0.26 (python 3.9.7-final-0, default/linux/amd64/17.1, gcc-11.2.0, glibc-2.33-r7, 4.19.174-gentoo x86_64) ================================================================= System uname: Linux-4.19.174-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-glibc2.33 KiB Mem: 264046488 total, 124575092 free KiB Swap: 0 total, 0 free sh bash 5.1_p8 ld GNU ld (Gentoo 2.37_p1 p0) 2.37 app-shells/bash: 5.1_p8::gentoo dev-lang/perl: 5.34.0-r2::gentoo dev-lang/python: 2.7.18_p13::gentoo, 3.8.12::gentoo, 3.9.7::gentoo, 3.10.0_rc2::gentoo dev-lang/rust: 1.55.0::gentoo dev-util/cmake: 3.21.3::gentoo sys-apps/baselayout: 2.8::gentoo sys-apps/openrc: 0.44.5::gentoo sys-apps/sandbox: 2.25::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.71-r1::gentoo sys-devel/automake: 1.16.4::gentoo sys-devel/binutils: 2.37_p1::gentoo sys-devel/gcc: 11.2.0::gentoo sys-devel/gcc-config: 2.4::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.14::gentoo (virtual/os-headers) sys-libs/glibc: 2.33-r7::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-max-age: 24 sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: guru location: /opt/guru masters: gentoo priority: 0 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* UCAR-Unidata" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches" DISTDIR="/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/distdir" EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" MAKEOPTS="-j4" PKGDIR="/root/.packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="acl amd64 bzip2 cli crypt cxx dri elogind erange-fill file-sync fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline relax-coord-bound seccomp split-usr ssl tcpd unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS ############################## # emerge history (qlop -mv): # ############################## 2021-10-02T00:39:22 >>> x11-misc/util-macros-1.19.3 2021-10-02T00:39:25 >>> virtual/fortran-0 2021-10-02T00:39:31 >>> media-fonts/font-util-1.3.2-r1 2021-10-02T00:39:37 >>> sys-apps/pciutils-3.7.0-r1 2021-10-02T00:39:43 >>> x11-libs/libpciaccess-0.16 2021-10-02T00:39:54 >>> sys-apps/hwloc-2.5.0 2021-10-02T00:40:02 >>> sys-cluster/openmpi-4.0.5-r1 2021-10-02T00:40:11 >>> virtual/mpi-2.0-r5 ####################################### # installed packages (qlist -ICvUSS): # ####################################### acct-group/input-0-r1:0 acct-group/kvm-0-r1:0 acct-group/man-0-r1:0 acct-group/messagebus-0-r1:0 acct-group/polkitd-0-r1:0 acct-group/portage-0:0 acct-group/render-0-r1:0 acct-group/sshd-0-r1:0 acct-user/man-1-r1:0 acct-user/messagebus-0-r1:0 acct-user/polkitd-0-r1:0 acct-user/portage-0:0 acct-user/sshd-0-r1:0 app-admin/eselect-1.4.17:0 -doc -emacs -vim-syntax app-admin/perl-cleaner-2.30:0 app-arch/bzip2-1.0.8-r1:0/1 -abi_mips_n32 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-abi_x86_x32 zlib x11-libs/libX11-1.7.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc ipv6 -test x11-libs/libXau-1.0.9-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libxcb-1.14:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb x11-libs/libXdmcp-1.1.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libXext-1.3.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc x11-libs/libXrender-0.9.10-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 x11-libs/pixman-0.40.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs x11-libs/xtrans-1.4.0:0 -doc x11-misc/compose-tables-1.7.2:0 x11-misc/shared-mime-info-2.1:0 x11-misc/util-macros-1.19.3:0 ####################### # build.log # ####################### * Using following Fortran compiler: * F77: x86_64-pc-linux-gnu-gfortran * FC: x86_64-pc-linux-gnu-gfortran >>> Unpacking source... >>> Unpacking pnetcdf-1.12.2.tar.gz to /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work >>> Source unpacked in /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work >>> Preparing source in /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2 ... * Running eautoreconf in '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2' ... * Running 'libtoolize --install --copy --force --automake' ... [ ok ] * Running 'aclocal -I m4' ... [ ok ] * Running 'autoconf --force' ... [ ok ] * Running 'autoheader' ... [ ok ] * Running 'automake --add-missing --copy --force-missing' ... [ ok ] * Running elibtoolize in: pnetcdf-1.12.2/ * Running elibtoolize in: pnetcdf-1.12.2/scripts/ * Applying portage/1.2.0 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/2.4.3 patch ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2 ... * econf: updating pnetcdf-1.12.2/scripts/config.guess with /usr/share/gnuconfig/config.guess * econf: updating pnetcdf-1.12.2/scripts/config.sub with /usr/share/gnuconfig/config.sub * econf: updating pnetcdf-1.12.2/config.guess with /usr/share/gnuconfig/config.guess * econf: updating pnetcdf-1.12.2/config.sub with /usr/share/gnuconfig/config.sub ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-dependency-tracking --disable-silent-rules --disable-static --docdir=/usr/share/doc/parallel-netcdf-1.12.2 --htmldir=/usr/share/doc/parallel-netcdf-1.12.2/html --with-sysroot=/ --libdir=/usr/lib64 --enable-shared --with-mpi=/usr --disable-burst-buffering --enable-cxx --disable-debug --disable-doxygen --enable-erange-fill --enable-file-sync --enable-fortran --disable-netcdf4 --disable-null-byte-header-padding --enable-relax-coord-bound --disable-subfiling --disable-thread-safe --without-netcdf4 checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for rm... yes checking for gawk... (cached) gawk checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a sed that does not truncate output... /bin/sed checking for sed handling option -i ... /bin/sed -i'' checking for mpicc... /usr/bin/mpicc checking for x86_64-pc-linux-gnu-gcc... /usr/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether /usr/bin/mpicc accepts -g... yes checking for /usr/bin/mpicc option to enable C11 features... none needed checking whether /usr/bin/mpicc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of /usr/bin/mpicc... none checking for C compiler vendor... gnu checking whether gcc version is greater than 10.0.0... yes checking base compiler command in MPICC wrapper... x86_64-pc-linux-gnu-gcc checking for x86_64-pc-linux-gnu-gcc... /usr/bin/x86_64-pc-linux-gnu-gcc checking how to run the C preprocessor... /usr/bin/mpicc -E checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for MPI_Comm_rank... yes checking for MPI_File_open... yes checking for /usr/bin/mpicc options needed to detect all undeclared functions... none needed checking MPI Standard version implemented... 3.1 checking whether MPICH_VERSION is declared... no checking whether MPICH2_VERSION is declared... no checking whether OMPI_MAJOR_VERSION is declared... yes checking whether MVAPICH2_VERSION is declared... no checking MPI vendor... OpenMPI 4.0.5 checking whether /usr/bin/mpicc is a wrapper of a C++ compiler... no checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar checking the archiver (x86_64-pc-linux-gnu-ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by /usr/bin/mpicc... /usr/x86_64-pc-linux-gnu/bin/ld checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-pc-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-pc-linux-gnu-ar... (cached) x86_64-pc-linux-gnu-ar checking for archiver @FILE support... @ checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from /usr/bin/mpicc object... ok checking for sysroot... / checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-pc-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /usr/bin/mpicc supports -fno-rtti -fno-exceptions... no checking for /usr/bin/mpicc option to produce PIC... -fPIC -DPIC checking if /usr/bin/mpicc PIC flag -fPIC -DPIC works... yes checking if /usr/bin/mpicc static flag -static works... no checking if /usr/bin/mpicc supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpicc supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpicc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... rm: cannot remove 'conftest*': No such file or directory no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for mpicxx... /usr/bin/mpicxx checking whether the compiler supports GNU C++... yes checking whether /usr/bin/mpicxx accepts -g... yes checking for /usr/bin/mpicxx option to enable C++11 features... none needed checking dependency style of /usr/bin/mpicxx... none checking how to run the C++ preprocessor... /usr/bin/mpicxx -E checking for ld used by /usr/bin/mpicxx... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /usr/bin/mpicxx linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /usr/bin/mpicxx option to produce PIC... -fPIC -DPIC checking if /usr/bin/mpicxx PIC flag -fPIC -DPIC works... yes checking if /usr/bin/mpicxx static flag -static works... no checking if /usr/bin/mpicxx supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpicxx supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpicxx linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for C++ compiler vendor... gnu checking base compiler command in MPICXX wrapper... x86_64-pc-linux-gnu-g++ checking for x86_64-pc-linux-gnu-g++... /usr/bin/x86_64-pc-linux-gnu-g++ checking for MPI_File_close... yes checking whether MPI C++ compiler redefines SEEK_SET ... no checking whether /usr/bin/mpif77 exists and is executable... yes checking whether /usr/bin/mpif90 exists and is executable... yes checking for x86_64-pc-linux-gnu-g77... /usr/bin/mpif77 checking whether the compiler supports GNU Fortran 77... yes checking whether /usr/bin/mpif77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for /usr/bin/mpif77 option to produce PIC... -fPIC checking if /usr/bin/mpif77 PIC flag -fPIC works... yes checking if /usr/bin/mpif77 static flag -static works... no checking if /usr/bin/mpif77 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpif77 supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif77 linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/bin/mpif77... -v checking for Fortran 77 libraries of /usr/bin/mpif77... -L/usr/lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../.. -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lquadmath -lpthread checking whether /usr/bin/mpif77 is a valid MPI compiler... yes checking for x86_64-pc-linux-gnu-gfortran... /usr/bin/mpif90 checking whether the compiler supports GNU Fortran... yes checking whether /usr/bin/mpif90 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for /usr/bin/mpif90 option to produce PIC... -fPIC checking if /usr/bin/mpif90 PIC flag -fPIC works... yes checking if /usr/bin/mpif90 static flag -static works... no checking if /usr/bin/mpif90 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpif90 supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif90 linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/bin/mpif90... -v checking for Fortran libraries of /usr/bin/mpif90... -L/usr/lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../.. -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lquadmath -lpthread checking whether mpi.mod is available... yes checking whether /usr/bin/mpif90 is a valid MPI compiler... yes checking for Fortran flag needed to accept free-form source... -ffree-form checking for Fortran flag to compile preprocessed .F files... none checking for Fortran flag to compile preprocessed .F90 files... none checking for Fortran flag to compile preprocessed .F files... (cached) none checking how to define symbols for preprocessed Fortran... -D checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .F files... none checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .F90 files... none checking for Fortran compiler vendor... gnu checking base compiler command in MPIF90 wrapper... x86_64-pc-linux-gnu-gfortran checking for x86_64-pc-linux-gnu-gfortran... /usr/bin/x86_64-pc-linux-gnu-gfortran checking for Fortran flag needed to accept fixed-form source... -ffixed-form checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for C-equivalent to Fortran routine "SUB_A"... sub_a_ checking Fortran compiler treating constant modifier... 8 checking Fortran 90 module extension... mod checking Fortran 90 module inclusion flag... -I checking Fortran 90 module extension... (cached) mod checking whether Fortran 90 compiler capitalizes .mod filenames... no configure: creating ./config.lt config.lt: creating libtool rm: cannot remove 'libtoolT': No such file or directory checking whether MPI library is built with shared library support... yes checking for m4... m4 checking m4 additional flags... none needed checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for IEEE floating point format... yes checking whether strdup is declared... yes checking for strdup... yes checking whether strerror is declared... yes checking for strerror... yes checking whether access is declared... yes checking for access... yes checking whether truncate is declared... yes checking for truncate... yes checking whether unlink is declared... yes checking for unlink... yes checking whether strcasecmp is declared... yes checking for strcasecmp... yes checking for search.h... yes checking whether tsearch is declared... yes checking for tsearch... yes checking whether tdelete is declared... yes checking for tdelete... yes checking size of MPI_Offset... 8 checking size of MPI_Aint... 8 checking whether MPI_COMBINER_HVECTOR_INTEGER is defined... no checking whether MPI_COMBINER_HINDEXED_INTEGER is defined... no checking whether MPI_COMBINER_STRUCT_INTEGER is defined... no checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for schar... no checking for uchar... no checking for ushort... yes checking for uint... yes checking for longlong... no checking for ulonglong... no checking for int64... no checking for uint64... no checking size of size_t... 8 checking size of off_t... 8 checking size of char... 1 checking size of signed char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short int... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of ptrdiff_t... 8 checking size of ushort... 2 checking size of uint... 4 checking size of MPI_Fint... 4 checking for /usr/bin/x86_64-pc-linux-gnu-nm... /usr/bin/x86_64-pc-linux-gnu-nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "integer*1"... yes checking for Fortran "integer*2"... yes checking for Fortran "integer*8"... yes checking if Fortran "integer*1" is ... "signed char" in C checking if Fortran "integer*2" is ... "short" in C checking if Fortran "integer*8" is ... "int" in C checking if Fortran "integer" is ... "int" in C checking if Fortran "real" is ... "float" in C checking if Fortran "doubleprecision" is ... "double" in C checking for Fortran 77 GNU intrinsic INT... yes checking for Fortran 77 intrinsic INT1... no checking for Fortran 77 intrinsic INT2... yes checking for Fortran 77 intrinsic INT8... yes checking for gcov... gcov checking if C++ macro __func__ or __FUNCTION__ is defined... yes checking whether FFLAGS already includes -fallow-argument-mismatch... no checking whether MPIF77 accepts option -fallow-argument-mismatch... yes checking whether FCFLAGS already includes -fallow-argument-mismatch... no checking whether MPIF90 accepts option -fallow-argument-mismatch... yes checking for latex... no checking for dvipdf... no checking for mpiexec... /usr/bin/mpiexec checking for gcc... /usr/bin/gcc checking C compiler for serial utility programs... /usr/bin/gcc checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dispatchers/Makefile config.status: creating src/libs/Makefile config.status: creating src/include/Makefile config.status: creating src/include/pnetcdf.h config.status: creating src/drivers/Makefile config.status: creating src/drivers/common/Makefile config.status: creating src/drivers/include/Makefile config.status: creating src/drivers/ncmpio/Makefile config.status: creating src/drivers/nc4io/Makefile config.status: creating src/drivers/ncadios/Makefile config.status: creating src/drivers/ncbbio/Makefile config.status: creating src/drivers/ncfoo/Makefile config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/pnetcdf.inc config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/pnetcdf.f90 config.status: creating src/binding/f90/api.fh config.status: creating src/binding/f90/nfmpi_constants.fh config.status: creating src/utils/Makefile config.status: creating src/utils/ncoffsets/Makefile config.status: creating src/utils/pnetcdf_version/Makefile config.status: creating src/utils/ncvalidator/Makefile config.status: creating src/utils/ncmpidiff/Makefile config.status: creating src/utils/ncmpidump/Makefile config.status: creating src/utils/ncmpigen/Makefile config.status: creating src/utils/ncmpilogdump/Makefile config.status: creating src/utils/pnetcdf-config config.status: creating src/packaging/Makefile config.status: creating src/packaging/pnetcdf.pc config.status: creating examples/Makefile config.status: creating examples/adios/Makefile config.status: creating examples/C/Makefile config.status: creating examples/tutorial/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/F77/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/burst_buffer/Makefile config.status: creating benchmarks/Makefile config.status: creating benchmarks/C/Makefile config.status: creating benchmarks/FLASH-IO/Makefile config.status: creating doc/Makefile config.status: creating doc/pnetcdf-api/Makefile config.status: creating man/Makefile config.status: creating test/Makefile config.status: creating test/common/Makefile config.status: creating test/C/Makefile config.status: creating test/fandc/Makefile config.status: creating test/nc_test/Makefile config.status: creating test/cdf_format/Makefile config.status: creating test/nc4/Makefile config.status: creating test/adios/Makefile config.status: creating test/header/Makefile config.status: creating test/testcases/Makefile config.status: creating test/nonblocking/Makefile config.status: creating test/largefile/Makefile config.status: creating test/CXX/Makefile config.status: creating test/subfile/Makefile config.status: creating test/nf_test/Makefile config.status: creating test/nf_test/tests.inc config.status: creating test/nf90_test/Makefile config.status: creating test/nf90_test/tests.inc config.status: creating test/F90/Makefile config.status: creating test/burst_buffer/Makefile config.status: creating src/include/config.h config.status: executing depfiles commands config.status: executing libtool commands rm: cannot remove 'libtoolT': No such file or directory ------------------------------------------------------------------------------ PnetCDF Version 1.12.2 Features: Build static libraries - no Build shared libraries - yes Build Fortran APIs - yes Build C++ APIs - yes Compilers: MPICC = /usr/bin/mpicc MPICXX = /usr/bin/mpicxx MPIF77 = /usr/bin/mpif77 MPIF90 = /usr/bin/mpif90 CFLAGS = -O2 -pipe -march=x86-64 -frecord-gcc-switches CXXFLAGS = -O2 -pipe -march=x86-64 -frecord-gcc-switches FFLAGS = -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch FCFLAGS = -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch LDFLAGS = -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 Now run 'make' to build the library and utility tools. Then run 'make []' for testing and installation, where the optional can be: tests - build all test programs (build only, no run) check - run sequential test programs ptest - run parallel test programs on 4 MPI processes ptests - run parallel test programs on 3,4,6,8 MPI processes install - install PnetCDF library in /usr ------------------------------------------------------------------------------ >>> Source configured. >>> Compiling source in /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2 ... make -j4 Making all in src make[1]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src' Making all in include make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/include' make all-am make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/include' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/include' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/include' Making all in dispatchers make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/dispatchers' m4 -DPNETCDF -I../../m4 attr_getput.m4 >attr_getput.c m4 -DPNETCDF -I../../m4 var_getput.m4 >var_getput.c make all-am make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/dispatchers' /bin/sh ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o lib_version.lo lib_version.c /bin/sh ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o file.lo file.c /bin/sh ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o dimension.lo dimension.c /bin/sh ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o variable.lo variable.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c dimension.c -fPIC -DPIC -o .libs/dimension.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c file.c -fPIC -DPIC -o .libs/file.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c lib_version.c -fPIC -DPIC -o .libs/lib_version.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c variable.c -fPIC -DPIC -o .libs/variable.o /bin/sh ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o attribute.lo attribute.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c attribute.c -fPIC -DPIC -o .libs/attribute.o /bin/sh ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o error_codes.lo error_codes.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c error_codes.c -fPIC -DPIC -o .libs/error_codes.o /bin/sh ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o attr_getput.lo attr_getput.c /bin/sh ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o var_getput.lo var_getput.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c attr_getput.c -fPIC -DPIC -o .libs/attr_getput.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/include -I../../src/include -I../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c var_getput.c -fPIC -DPIC -o .libs/var_getput.o /bin/sh ../../libtool --tag=CC --mode=link /usr/bin/mpicc -O2 -pipe -march=x86-64 -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libdispatchers.la lib_version.lo file.lo dimension.lo variable.lo attribute.lo error_codes.lo attr_getput.lo var_getput.lo libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libdispatchers.a .libs/lib_version.o .libs/file.o .libs/dimension.o .libs/variable.o .libs/attribute.o .libs/error_codes.o .libs/attr_getput.o .libs/var_getput.o libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libdispatchers.a libtool: link: ( cd ".libs" && rm -f "libdispatchers.la" && ln -s "../libdispatchers.la" "libdispatchers.la" ) make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/dispatchers' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/dispatchers' Making all in drivers make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers' Making all in include make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/include' m4 -DPNETCDF -I../../../m4 ncx_h.m4 >ncx.h make all-am make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/include' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/include' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/include' Making all in common make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/common' m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncx.m4 >ncx.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL convert_swap.m4 >convert_swap.c make all-am make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/common' /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o utf8proc.lo utf8proc.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o mem_alloc.lo mem_alloc.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o dtype_decode.lo dtype_decode.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o create_imaptype.lo create_imaptype.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c utf8proc.c -fPIC -DPIC -o .libs/utf8proc.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c create_imaptype.c -fPIC -DPIC -o .libs/create_imaptype.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c mem_alloc.c -fPIC -DPIC -o .libs/mem_alloc.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c dtype_decode.c -fPIC -DPIC -o .libs/dtype_decode.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o error_mpi2nc.lo error_mpi2nc.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o check_name.lo check_name.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c error_mpi2nc.c -fPIC -DPIC -o .libs/error_mpi2nc.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c check_name.c -fPIC -DPIC -o .libs/check_name.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o pack_unpack.lo pack_unpack.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o utils.lo utils.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o error_posix2nc.lo error_posix2nc.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c pack_unpack.c -fPIC -DPIC -o .libs/pack_unpack.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c utils.c -fPIC -DPIC -o .libs/utils.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c error_posix2nc.c -fPIC -DPIC -o .libs/error_posix2nc.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o hash_map.lo hash_map.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-strict-aliasing -c -o ncx.lo ncx.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o convert_swap.lo convert_swap.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c hash_map.c -fPIC -DPIC -o .libs/hash_map.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-strict-aliasing -c ncx.c -fPIC -DPIC -o .libs/ncx.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c convert_swap.c -fPIC -DPIC -o .libs/convert_swap.o /bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -O2 -pipe -march=x86-64 -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libcommon.la utf8proc.lo mem_alloc.lo dtype_decode.lo create_imaptype.lo error_mpi2nc.lo check_name.lo pack_unpack.lo utils.lo error_posix2nc.lo hash_map.lo ncx.lo convert_swap.lo libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libcommon.a .libs/utf8proc.o .libs/mem_alloc.o .libs/dtype_decode.o .libs/create_imaptype.o .libs/error_mpi2nc.o .libs/check_name.o .libs/pack_unpack.o .libs/utils.o .libs/error_posix2nc.o .libs/hash_map.o .libs/ncx.o .libs/convert_swap.o libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libcommon.a libtool: link: ( cd ".libs" && rm -f "libcommon.la" && ln -s "../libcommon.la" "libcommon.la" ) make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/common' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/common' Making all in ncmpio make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/ncmpio' m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_getput.m4 >ncmpio_getput.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_i_getput.m4 >ncmpio_i_getput.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_varn.m4 >ncmpio_varn.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_i_varn.m4 >ncmpio_i_varn.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_attr.m4 >ncmpio_attr.c make all-am make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/ncmpio' /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_driver.lo ncmpio_driver.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_create.lo ncmpio_create.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_open.lo ncmpio_open.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_enddef.lo ncmpio_enddef.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_create.c -fPIC -DPIC -o .libs/ncmpio_create.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_driver.c -fPIC -DPIC -o .libs/ncmpio_driver.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_enddef.c -fPIC -DPIC -o .libs/ncmpio_enddef.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_open.c -fPIC -DPIC -o .libs/ncmpio_open.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_close.lo ncmpio_close.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_sync.lo ncmpio_sync.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_file_misc.lo ncmpio_file_misc.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_close.c -fPIC -DPIC -o .libs/ncmpio_close.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_sync.c -fPIC -DPIC -o .libs/ncmpio_sync.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_file_misc.c -fPIC -DPIC -o .libs/ncmpio_file_misc.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_header_get.lo ncmpio_header_get.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_header_put.lo ncmpio_header_put.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_dim.lo ncmpio_dim.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_header_get.c -fPIC -DPIC -o .libs/ncmpio_header_get.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_dim.c -fPIC -DPIC -o .libs/ncmpio_dim.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_header_put.c -fPIC -DPIC -o .libs/ncmpio_header_put.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_var.lo ncmpio_var.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_var.c -fPIC -DPIC -o .libs/ncmpio_var.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_bput.lo ncmpio_bput.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_filetype.lo ncmpio_filetype.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_bput.c -fPIC -DPIC -o .libs/ncmpio_bput.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_filetype.c -fPIC -DPIC -o .libs/ncmpio_filetype.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_wait.lo ncmpio_wait.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_wait.c -fPIC -DPIC -o .libs/ncmpio_wait.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_vard.lo ncmpio_vard.c ncmpio_filetype.c: In function ‘type_create_subarray64.constprop’: ncmpio_filetype.c:154:21: warning: â€-Wstringop-overread][]] 154 | mpireturn = MPI_Type_create_subarray(ndims, sizes, subsizes, starts, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | order, oldtype, newtype); | ~~~~~~~~~~~~~~~~~~~~~~~~ ncmpio_filetype.c:154:21: note: referencing argument 3 of type ‘const int *’ ncmpio_filetype.c:154:21: warning: â€-Wstringop-overread][]] ncmpio_filetype.c:154:21: note: referencing argument 4 of type ‘const int *’ In file included from /usr/include/mpi.h:10, from ncmpio_filetype.c:18: /usr/include/x86_64-pc-linux-gnu/mpi.h:1851:20: note: in a call to function ‘MPI_Type_create_subarray’ 1851 | OMPI_DECLSPEC int MPI_Type_create_subarray(int ndims, const int size_array[], const int subsize_array[], | ^~~~~~~~~~~~~~~~~~~~~~~~ /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_fill.lo ncmpio_fill.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_vard.c -fPIC -DPIC -o .libs/ncmpio_vard.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_fill.c -fPIC -DPIC -o .libs/ncmpio_fill.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_util.lo ncmpio_util.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_hash_func.lo ncmpio_hash_func.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_util.c -fPIC -DPIC -o .libs/ncmpio_util.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_hash_func.c -fPIC -DPIC -o .libs/ncmpio_hash_func.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_file_io.lo ncmpio_file_io.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_file_io.c -fPIC -DPIC -o .libs/ncmpio_file_io.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_getput.lo ncmpio_getput.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_i_getput.lo ncmpio_i_getput.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_getput.c -fPIC -DPIC -o .libs/ncmpio_getput.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_i_getput.c -fPIC -DPIC -o .libs/ncmpio_i_getput.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_varn.lo ncmpio_varn.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_varn.c -fPIC -DPIC -o .libs/ncmpio_varn.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_i_varn.lo ncmpio_i_varn.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_i_varn.c -fPIC -DPIC -o .libs/ncmpio_i_varn.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpio_attr.lo ncmpio_attr.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/include -I../../../src/drivers/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c ncmpio_attr.c -fPIC -DPIC -o .libs/ncmpio_attr.o /bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -O2 -pipe -march=x86-64 -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libncmpio.la ncmpio_driver.lo ncmpio_create.lo ncmpio_open.lo ncmpio_enddef.lo ncmpio_close.lo ncmpio_sync.lo ncmpio_file_misc.lo ncmpio_header_get.lo ncmpio_header_put.lo ncmpio_dim.lo ncmpio_var.lo ncmpio_bput.lo ncmpio_filetype.lo ncmpio_wait.lo ncmpio_vard.lo ncmpio_fill.lo ncmpio_util.lo ncmpio_hash_func.lo ncmpio_file_io.lo ncmpio_getput.lo ncmpio_i_getput.lo ncmpio_varn.lo ncmpio_i_varn.lo ncmpio_attr.lo libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libncmpio.a .libs/ncmpio_driver.o .libs/ncmpio_create.o .libs/ncmpio_open.o .libs/ncmpio_enddef.o .libs/ncmpio_close.o .libs/ncmpio_sync.o .libs/ncmpio_file_misc.o .libs/ncmpio_header_get.o .libs/ncmpio_header_put.o .libs/ncmpio_dim.o .libs/ncmpio_var.o .libs/ncmpio_bput.o .libs/ncmpio_filetype.o .libs/ncmpio_wait.o .libs/ncmpio_vard.o .libs/ncmpio_fill.o .libs/ncmpio_util.o .libs/ncmpio_hash_func.o .libs/ncmpio_file_io.o .libs/ncmpio_getput.o .libs/ncmpio_i_getput.o .libs/ncmpio_varn.o .libs/ncmpio_i_varn.o .libs/ncmpio_attr.o libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libncmpio.a libtool: link: ( cd ".libs" && rm -f "libncmpio.la" && ln -s "../libncmpio.la" "libncmpio.la" ) make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/ncmpio' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/ncmpio' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers' Making all in binding make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding' Making all in cxx make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/cxx' cat ./pnetcdf.in >pnetcdf set -e; for i in ncmpi_notyet.h ncmpiCheck.h ncmpiType.h ncmpiAtt.h ncmpiEnumType.h ncmpiGroupAtt.h ncmpiGroup.h ncmpiByte.h ncmpiChar.h ncmpiCompoundType.h ncmpiDouble.h ncmpiFloat.h ncmpiInt.h ncmpiInt64.h ncmpiOpaqueType.h ncmpiShort.h ncmpiUbyte.h ncmpiUint.h ncmpiUint64.h ncmpiUshort.h ncmpiException.h ncmpiDim.h ncmpiFile.h ncmpiVarAtt.h ncmpiVar.h ncmpiVlenType.h; do ( \ /bin/sed -e '/#ifndef/d' -e '/#define/d' -e '/#endif/d' -e '/#include/d' ./$i >> pnetcdf ; \ ) ; done make all-am make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/cxx' /bin/sh ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpi_notyet.lo ncmpi_notyet.cpp /bin/sh ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpiCheck.lo ncmpiCheck.cpp /bin/sh ../../../libtool --tag=CXX --mode=compile 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.libs/ncmpi_notyet.o .libs/ncmpiCheck.o .libs/ncmpiType.o .libs/ncmpiAtt.o .libs/ncmpiEnumType.o .libs/ncmpiGroupAtt.o .libs/ncmpiGroup.o .libs/ncmpiByte.o .libs/ncmpiChar.o .libs/ncmpiCompoundType.o .libs/ncmpiDouble.o .libs/ncmpiFloat.o .libs/ncmpiInt.o .libs/ncmpiInt64.o .libs/ncmpiOpaqueType.o .libs/ncmpiShort.o .libs/ncmpiUbyte.o .libs/ncmpiUint.o .libs/ncmpiUint64.o .libs/ncmpiUshort.o .libs/ncmpiException.o .libs/ncmpiDim.o .libs/ncmpiFile.o .libs/ncmpiVarAtt.o .libs/ncmpiVar.o .libs/ncmpiVlenType.o libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libcxx.a libtool: link: ( cd ".libs" && rm -f "libcxx.la" && ln -s "../libcxx.la" "libcxx.la" ) make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/cxx' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/cxx' Making all in f77 make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f77' /bin/sh ../../../libtool --tag=F77 --mode=compile /usr/bin/mpif77 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c -o strerrorf.lo strerrorf.f /bin/sh ../../../libtool --tag=F77 --mode=compile /usr/bin/mpif77 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c -o strerrnof.lo strerrnof.f /bin/sh ../../../libtool --tag=F77 --mode=compile /usr/bin/mpif77 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c -o inq_libversf.lo inq_libversf.f rm -f mpifnetcdf.h issyserrf.c xstrerrorf.c xstrerrnof.c xinq_libversf.c allf.c ./buildiface -infile=../../../src/include/pnetcdf.h -deffile=./defs > allf.c libtool: compile: /usr/bin/mpif77 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c strerrnof.f -fPIC -o .libs/strerrnof.o libtool: compile: /usr/bin/mpif77 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c strerrorf.f -fPIC -o .libs/strerrorf.o libtool: compile: /usr/bin/mpif77 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c inq_libversf.f -fPIC -o .libs/inq_libversf.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o issyserrf.lo issyserrf.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o xstrerrorf.lo xstrerrorf.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o xstrerrnof.lo xstrerrnof.c /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o xinq_libversf.lo xinq_libversf.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c issyserrf.c -fPIC -DPIC -o .libs/issyserrf.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c xstrerrorf.c -fPIC -DPIC -o .libs/xstrerrorf.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c xstrerrnof.c -fPIC -DPIC -o .libs/xstrerrnof.o libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c xinq_libversf.c -fPIC -DPIC -o .libs/xinq_libversf.o /bin/sh ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o allf.lo allf.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c allf.c -fPIC -DPIC -o .libs/allf.o /bin/sh ../../../libtool --tag=F77 --mode=link /usr/bin/mpif77 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libf77.la strerrorf.lo strerrnof.lo inq_libversf.lo issyserrf.lo xstrerrorf.lo xstrerrnof.lo xinq_libversf.lo allf.lo libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libf77.a .libs/strerrorf.o .libs/strerrnof.o .libs/inq_libversf.o .libs/issyserrf.o .libs/xstrerrorf.o .libs/xstrerrnof.o .libs/xinq_libversf.o .libs/allf.o libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libf77.a libtool: link: ( cd ".libs" && rm -f "libf77.la" && ln -s "../libf77.la" "libf77.la" ) make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f77' Making all in f90 make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f90' m4 -DPNETCDF -DINTENTV=INOUT getput_text.m4 >getput_text.fh m4 -DPNETCDF -DINTENTV=INOUT getput_var.m4 >getput_var.fh m4 -DPNETCDF -DINTENTV=INOUT getput_varn.m4 >getput_varn.fh m4 -DPNETCDF -DINTENTV=INOUT getput_vard.m4 >getput_vard.fh make all-am make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f90' /bin/sh ../../../libtool --tag=FC --mode=compile /usr/bin/mpif90 -I. -I. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c -o pnetcdf.lo pnetcdf.f90 libtool: compile: /usr/bin/mpif90 -I. -I. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c pnetcdf.f90 -fPIC -o .libs/pnetcdf.o getput_vard.fh:1988:86: 1988 | EightByteInt_all = nfmpi_get_vard_all(ncid, varid, filetype, buf, bufcount, buftype) | 1 ...... 2324 | text_all = nfmpi_get_vard_all(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). getput_vard.fh:1558:86: 1558 | EightByteInt_all = nfmpi_put_vard_all(ncid, varid, filetype, buf, bufcount, buftype) | 1 ...... 2253 | text_all = nfmpi_put_vard_all(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). getput_vard.fh:1128:78: 1128 | vard_7D_EightByteInt = nfmpi_get_vard(ncid, varid, filetype, buf, bufcount, buftype) | 1 ...... 2178 | vard_7D_text = nfmpi_get_vard(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). getput_vard.fh:698:78: 698 | vard_7D_EightByteInt = nfmpi_put_vard(ncid, varid, filetype, buf, bufcount, buftype) | 1 ...... 2107 | vard_7D_text = nfmpi_put_vard(ncid, varid, filetype, buf(1,1,1,1,1,1,1), bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/CHARACTER(*)). getput_var.fh:23249:84: 23249 | _varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 1 ...... 23782 | _varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:23257:79: 23257 | _bput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 1 ...... 23790 | _bput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:23265:66: 23265 | nfmpi_bput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 1 ...... 23798 | nfmpi_bput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:20047:84: 20047 | _varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 1 ...... 20580 | _varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:20055:79: 20055 | _iget_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 1 ...... 20588 | _iget_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:20063:66: 20063 | nfmpi_iget_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 1 ...... 20596 | nfmpi_iget_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:16845:84: 16845 | _varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 1 ...... 17378 | _varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:16853:79: 16853 | _iput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 1 ...... 17386 | _iput_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:16861:66: 16861 | nfmpi_iput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 1 ...... 17394 | nfmpi_iput_vara(ncid, varid, localStart, localCount, values, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:13645:87: 13645 | m_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 1 ...... 14171 | m_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:13653:82: 13653 | t_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 1 ...... 14179 | t_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:13661:69: 13661 | nfmpi_get_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype) | 1 ...... 14187 | nfmpi_get_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:10486:87: 10486 | m_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 1 ...... 11012 | m_all(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:10494:82: 10494 | t_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 1 ...... 11020 | t_vars_all(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:10502:69: 10502 | nfmpi_put_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype) | 1 ...... 11028 | nfmpi_put_vara_all(ncid, varid, localStart, localCount, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:7326:83: 7326 | _varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 1 ...... 7852 | _varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:7334:78: 7334 | i_get_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 1 ...... 7860 | i_get_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:7342:65: 7342 | nfmpi_get_vara(ncid, varid, localStart, localCount, values, bufcount, buftype) | 1 ...... 7868 | nfmpi_get_vara(ncid, varid, localStart, localCount, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:4166:83: 4166 | _varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 1 ...... 4692 | _varm(ncid, varid, localStart, localCount, localStride, map, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:4174:78: 4174 | i_put_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 1 ...... 4700 | i_put_vars(ncid, varid, localStart, localCount, localStride, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:4182:65: 4182 | nfmpi_put_vara(ncid, varid, localStart, localCount, values, bufcount, buftype) | 1 ...... 4708 | nfmpi_put_vara(ncid, varid, localStart, localCount, values, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:1513:50: 1513 | nfmpi_bput_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 1 ...... 1550 | nfmpi_bput_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:1286:50: 1286 | nfmpi_iget_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 1 ...... 1323 | nfmpi_iget_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:1059:50: 1059 | nfmpi_iput_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 1 ...... 1096 | nfmpi_iput_var1(ncid, varid, localStart, buf, bufcount, buftype, req) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:832:53: 832 | nfmpi_get_var1_all(ncid, varid, localStart, buf, bufcount, buftype) | 1 ...... 868 | nfmpi_get_var1_all(ncid, varid, localStart, buf, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:615:49: 615 | nfmpi_get_var1(ncid, varid, localStart, buf, bufcount, buftype) | 1 ...... 651 | nfmpi_get_var1(ncid, varid, localStart, buf, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:398:53: 398 | nfmpi_put_var1_all(ncid, varid, localStart, buf, bufcount, buftype) | 1 ...... 434 | nfmpi_put_var1_all(ncid, varid, localStart, buf, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). getput_var.fh:181:49: 181 | nfmpi_put_var1(ncid, varid, localStart, buf, bufcount, buftype) | 1 ...... 217 | nfmpi_put_var1(ncid, varid, localStart, buf, bufcount, buftype) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/INTEGER(8)). variables.fh:215:81: 215 | fill_FourByteReal = nfmpi_inq_var_fill(ncid, varid, no_fill, fill_value) | 1 ...... 224 | fill_EightByteReal = nfmpi_inq_var_fill(ncid, varid, no_fill, fill_value) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). variables.fh:151:81: 151 | fill_FourByteReal = nfmpi_def_var_fill(ncid, varid, no_fill, fill_value) | 1 ...... 159 | fill_EightByteReal = nfmpi_def_var_fill(ncid, varid, no_fill, fill_value) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). /bin/sh ../../../libtool --tag=FC --mode=link /usr/bin/mpif90 -I. -I. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libf90.la pnetcdf.lo libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libf90.a .libs/pnetcdf.o libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libf90.a libtool: link: ( cd ".libs" && rm -f "libf90.la" && ln -s "../libf90.la" "libf90.la" ) make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f90' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f90' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding' Making all in packaging make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/packaging' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/packaging' Making all in . make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src' Making all in libs make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/libs' /bin/sh ../../libtool --tag=CXX --mode=link /usr/bin/mpicxx -O2 -pipe -march=x86-64 -frecord-gcc-switches -version-info 4:2:0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libpnetcdf.la -rpath /usr/lib64 ../dispatchers/libdispatchers.la ../drivers/common/libcommon.la ../drivers/ncmpio/libncmpio.la ../binding/cxx/libcxx.la ../binding/f77/libf77.la ../binding/f90/libf90.la -L/usr/lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../.. -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lquadmath -lpthread -L/usr/lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../.. -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lquadmath -lpthread libtool: link: /usr/bin/mpicxx -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/crtbeginS.o -Wl,--whole-archive ../dispatchers/.libs/libdispatchers.a ../drivers/common/.libs/libcommon.a ../drivers/ncmpio/.libs/libncmpio.a ../binding/cxx/.libs/libcxx.a ../binding/f77/.libs/libf77.a ../binding/f90/.libs/libf90.a -Wl,--no-whole-archive -Wl,-rpath -Wl,//usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0 -Wl,--as-needed -L/usr/lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../.. -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran //usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/libquadmath.so -lmpi -lstdc++ -lm -lpthread -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64/crtn.o -O2 -march=x86-64 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -Wl,-soname -Wl,libpnetcdf.so.4 -o .libs/libpnetcdf.so.4.0.2 libtool: link: (cd ".libs" && rm -f "libpnetcdf.so.4" && ln -s "libpnetcdf.so.4.0.2" "libpnetcdf.so.4") libtool: link: (cd ".libs" && rm -f "libpnetcdf.so" && ln -s "libpnetcdf.so.4.0.2" "libpnetcdf.so") libtool: link: ( cd ".libs" && rm -f "libpnetcdf.la" && ln -s "../libpnetcdf.la" "libpnetcdf.la" ) make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/libs' Making all in utils make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils' Making all in ncmpigen make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpigen' /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o main.o main.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o load.o load.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o escapes.o escapes.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o getfill.o getfill.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o init.o init.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o genlib.o genlib.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpigentab.o ncmpigentab.c /bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -O2 -pipe -march=x86-64 -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o ncmpigen main.o load.o escapes.o getfill.o init.o genlib.o ncmpigentab.o ../../../src/libs/libpnetcdf.la libtool: link: /usr/bin/mpicc -O2 -pipe -march=x86-64 -frecord-gcc-switches -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/ncmpigen main.o load.o escapes.o getfill.o init.o genlib.o ncmpigentab.o -Wl,--as-needed ../../../src/libs/.libs/libpnetcdf.so -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran //usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/libquadmath.so -lm make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpigen' Making all in ncmpidump make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpidump' /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpidump.o ncmpidump.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o vardata.o vardata.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o dumplib.o dumplib.c /bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -O2 -pipe -march=x86-64 -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o ncmpidump ncmpidump.o vardata.o dumplib.o ../../../src/libs/libpnetcdf.la libtool: link: /usr/bin/mpicc -O2 -pipe -march=x86-64 -frecord-gcc-switches -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/ncmpidump ncmpidump.o vardata.o dumplib.o -Wl,--as-needed ../../../src/libs/.libs/libpnetcdf.so -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran //usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/libquadmath.so -lm make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpidump' Making all in ncmpidiff make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpidiff' /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/include -I../../../src/include -I../../../src/include -O2 -pipe -march=x86-64 -frecord-gcc-switches -c -o ncmpidiff.o ncmpidiff.c /usr/bin/gcc -I../../../src/utils/ncvalidator -o cdfdiff cdfdiff.c /bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -O2 -pipe -march=x86-64 -frecord-gcc-switches -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o ncmpidiff ncmpidiff.o ../../../src/libs/libpnetcdf.la libtool: link: /usr/bin/mpicc -O2 -pipe -march=x86-64 -frecord-gcc-switches -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/ncmpidiff ncmpidiff.o -Wl,--as-needed ../../../src/libs/.libs/libpnetcdf.so -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran //usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/libquadmath.so -lm make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpidiff' Making all in ncvalidator make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncvalidator' /usr/bin/gcc -o ncvalidator ncvalidator.c make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncvalidator' Making all in pnetcdf_version make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/pnetcdf_version' /usr/bin/gcc -DMPICC="\"/usr/bin/mpicc\"" -DCFLAGS="\"-O2 -pipe -march=x86-64 -frecord-gcc-switches\"" -DCONFIGURE_ARGS_CLEAN="\"--prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-dependency-tracking --disable-silent-rules --disable-static --docdir=/usr/share/doc/parallel-netcdf-1.12.2 --htmldir=/usr/share/doc/parallel-netcdf-1.12.2/html --with-sysroot=/ --libdir=/usr/lib64 --enable-shared --with-mpi=/usr --disable-burst-buffering --enable-cxx --disable-debug --disable-doxygen --enable-erange-fill --enable-file-sync --enable-fortran --disable-netcdf4 --disable-null-byte-header-padding --enable-relax-coord-bound --disable-subfiling --disable-thread-safe --without-netcdf4\"" -DPNETCDF_VERSION="\"1.12.2\"" -DMPICXX="\"/usr/bin/mpicxx\"" -DCXXFLAGS="\"-O2 -pipe -march=x86-64 -frecord-gcc-switches\"" -DMPIF77="\"/usr/bin/mpif77\"" -DFFLAGS="\"-O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch\"" -DMPIF90="\"/usr/bin/mpif90\"" -DFCFLAGS="\"-O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch\"" -o pnetcdf_version pnetcdf_version.c make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/pnetcdf_version' Making all in ncoffsets make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncoffsets' /usr/bin/gcc -o ncoffsets ncoffsets.c make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncoffsets' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils' make[1]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src' Making all in man make[1]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/man' m4 -DPNETCDF -DAPI=C -DPNETCDF_VERSION=1.12.2 pnetcdf.m4 > pnetcdf.3 || rm -f pnetcdf.3 m4 -DPNETCDF -DAPI=F -DPNETCDF_VERSION=1.12.2 pnetcdf.m4 > pnetcdf_f77.3 || rm -f pnetcdf_f77.3 m4 -DPNETCDF -DPNETCDF_VERSION=1.12.2 pnetcdf_f90.m4 > pnetcdf_f90.3 || rm -f pnetcdf_f90.3 make[1]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/man' Making all in examples make[1]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples' Making all in C make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/C' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/C' Making all in CXX make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/CXX' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/CXX' Making all in F77 make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/F77' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/F77' Making all in F90 make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/F90' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/F90' Making all in tutorial make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/tutorial' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/tutorial' make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples' make[1]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples' Making all in benchmarks make[1]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks' Making all in C make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks/C' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks/C' Making all in FLASH-IO make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks/FLASH-IO' /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c -o get_mfluid_property.o get_mfluid_property.F90 /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c -o flash_release.o flash_release.F90 /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c -o flash_benchmark_io.o flash_benchmark_io.F90 /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c -o checkpoint_ncmpi_parallel.o checkpoint_ncmpi_parallel.F90 /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../src/include -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -c -o plotfile_ncmpi_parallel.o plotfile_ncmpi_parallel.F90 flash_benchmark_io.F90:236:23: 221 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, & | 2 ...... 236 | call MPI_Reduce(chk_io, bw, 1, MPI_DOUBLE_PRECISION, MPI_SUM, & | 1 Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar) flash_benchmark_io.F90:239:23: 221 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, & | 2 ...... 239 | call MPI_Reduce(nocorner_io, bw, 1, MPI_DOUBLE_PRECISION, MPI_SUM, & | 1 Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar) flash_benchmark_io.F90:242:23: 221 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, & | 2 ...... 242 | call MPI_Reduce(corner_io, bw, 1, MPI_DOUBLE_PRECISION, MPI_SUM, & | 1 Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (rank-1 and scalar) flash_benchmark_io.F90:303:26: 221 | call MPI_Reduce(chk_t, tmax, 3, MPI_DOUBLE_PRECISION, MPI_MAX, & | 2 ...... 303 | call MPI_Reduce(malloc_size, sum_size, 1, MPI_OFFSET, MPI_SUM, & | 1 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(8)/REAL(8)). flash_benchmark_io.F90:79:21: 74 | call MPI_Bcast(isArgvRight, 1, MPI_LOGICAL, MasterPE, & | 2 ...... 79 | call MPI_Bcast(basenm, 128, MPI_CHARACTER, MasterPE, & | 1 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (CHARACTER(128)/LOGICAL(4)). flash_benchmark_io.F90:129:39: 122 | nocorner_io = plotfile_ncmpi_par(0, simtime, .false.) | 2 ...... 129 | corner_io = plotfile_ncmpi_par(0,0.e0,.true.) | 1 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). /bin/sh ../../libtool --tag=FC --mode=link /usr/bin/mpif90 -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -L../../src/libs -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o flash_benchmark_io get_mfluid_property.o flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o -lpnetcdf libtool: link: /usr/bin/mpif90 -I../../src/binding/f90 -I. -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fallow-argument-mismatch -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/flash_benchmark_io get_mfluid_property.o flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o -L../../src/libs -Wl,--as-needed /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/libs/.libs/libpnetcdf.so -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran //usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/libquadmath.so -lm make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks/FLASH-IO' make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks' make[1]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks' Making all in test make[1]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test' Making all in common make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/common' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/common' Making all in C make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/C' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/C' Making all in fandc make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/fandc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/fandc' Making all in nc_test make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nc_test' m4 -DPNETCDF -I../../m4 tests.h.m4 > tests.h make all-am make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nc_test' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nc_test' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nc_test' Making all in cdf_format make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/cdf_format' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/cdf_format' Making all in header make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/header' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/header' Making all in testcases make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/testcases' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/testcases' Making all in nonblocking make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nonblocking' m4 -DPNETCDF -I../../m4 bput_varn.m4 >bput_varn.c m4 -DPNETCDF -I../../m4 column_wise.m4 >column_wise.c make all-am make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nonblocking' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nonblocking' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nonblocking' Making all in CXX make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/CXX' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/CXX' Making all in nf_test make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nf_test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nf_test' Making all in nf90_test make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nf90_test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nf90_test' Making all in F90 make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/F90' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/F90' make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test' make[1]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test' make[1]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2' >>> Source compiled. >>> Test phase [not enabled]: sys-cluster/parallel-netcdf-1.12.2 >>> Install sys-cluster/parallel-netcdf-1.12.2 into /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image make -j4 DESTDIR=/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image install Making install in src make[1]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src' Making install in include make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/include' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/include' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/include' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c -m 644 pnetcdf.h '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/include' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/include' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/include' Making install in dispatchers make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/dispatchers' make install-am make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/dispatchers' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/dispatchers' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/dispatchers' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/dispatchers' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/dispatchers' Making install in drivers make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers' Making install in include make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/include' make install-am make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/include' make[5]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/include' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/include' make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/include' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/include' Making install in common make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/common' make install-am make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/common' make[5]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/common' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/common' make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/common' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/common' Making install in ncmpio make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/ncmpio' make install-am make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/ncmpio' make[5]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/ncmpio' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/ncmpio' make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/ncmpio' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers/ncmpio' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/drivers' Making install in binding make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding' Making install in cxx make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/cxx' make install-am make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/cxx' make[5]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/cxx' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/include' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c -m 644 pnetcdf '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/include' make[5]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/cxx' make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/cxx' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/cxx' Making install in f77 make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f77' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f77' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/include' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c -m 644 pnetcdf.inc '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/include' make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f77' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f77' Making install in f90 make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f90' make install-am make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f90' make[5]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f90' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/include' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c -m 644 pnetcdf.mod '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/include' make[5]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f90' make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f90' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding/f90' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/binding' Making install in packaging make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/packaging' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/packaging' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/lib64/pkgconfig' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c -m 644 pnetcdf.pc '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/lib64/pkgconfig' make install-data-hook make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/packaging' /bin/sed -i'' -e 's|INSTALL_PREFIX|/usr|g ; s|INSTALL_EXEC_PREFIX|/usr|g' /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/lib64/pkgconfig/pnetcdf.pc make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/packaging' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/packaging' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/packaging' Making install in . make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src' Making install in libs make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/libs' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/libs' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/lib64' /bin/sh ../../libtool --mode=install /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c libpnetcdf.la '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/lib64' libtool: install: /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c .libs/libpnetcdf.so.4.0.2 /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/lib64/libpnetcdf.so.4.0.2 libtool: install: (cd /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/lib64 && { ln -s -f libpnetcdf.so.4.0.2 libpnetcdf.so.4 || { rm -f libpnetcdf.so.4 && ln -s libpnetcdf.so.4.0.2 libpnetcdf.so.4; }; }) libtool: install: (cd /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/lib64 && { ln -s -f libpnetcdf.so.4.0.2 libpnetcdf.so || { rm -f libpnetcdf.so && ln -s libpnetcdf.so.4.0.2 libpnetcdf.so; }; }) libtool: install: /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c .libs/libpnetcdf.lai /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/lib64/libpnetcdf.la libtool: warning: remember to run 'libtool --finish /usr/lib64' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/libs' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/libs' Making install in utils make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils' Making install in ncmpigen make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpigen' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpigen' /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man1' /bin/sh ../../../libtool --mode=install /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c ncmpigen '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c -m 644 ncmpigen.1 '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man1' libtool: warning: '../../../src/libs/libpnetcdf.la' has not been installed in '/usr/lib64' libtool: install: /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c .libs/ncmpigen /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin/ncmpigen make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpigen' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpigen' Making install in ncmpidump make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpidump' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpidump' /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man1' /bin/sh ../../../libtool --mode=install /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c ncmpidump '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c -m 644 ncmpidump.1 '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man1' libtool: warning: '../../../src/libs/libpnetcdf.la' has not been installed in '/usr/lib64' libtool: install: /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c .libs/ncmpidump /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin/ncmpidump make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpidump' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpidump' Making install in ncmpidiff make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpidiff' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpidiff' /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man1' /bin/sh ../../../libtool --mode=install /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c ncmpidiff cdfdiff '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c -m 644 ncmpidiff.1 cdfdiff.1 '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man1' libtool: warning: '../../../src/libs/libpnetcdf.la' has not been installed in '/usr/lib64' libtool: install: /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c .libs/ncmpidiff /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin/ncmpidiff libtool: install: /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c cdfdiff /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin/cdfdiff make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpidiff' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncmpidiff' Making install in ncvalidator make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncvalidator' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncvalidator' /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man1' /bin/sh ../../../libtool --mode=install /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c ncvalidator '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c -m 644 ncvalidator.1 '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man1' libtool: install: /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c ncvalidator /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin/ncvalidator make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncvalidator' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncvalidator' Making install in pnetcdf_version make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/pnetcdf_version' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/pnetcdf_version' /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man1' /bin/sh ../../../libtool --mode=install /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c pnetcdf_version '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c -m 644 pnetcdf_version.1 '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man1' libtool: install: /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c pnetcdf_version /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin/pnetcdf_version make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/pnetcdf_version' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/pnetcdf_version' Making install in ncoffsets make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncoffsets' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncoffsets' /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man1' /bin/sh ../../../libtool --mode=install /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c ncoffsets '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c -m 644 ncoffsets.1 '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man1' libtool: install: /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c ncoffsets /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin/ncoffsets make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncoffsets' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils/ncoffsets' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c pnetcdf-config '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin' make install-exec-hook make[5]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils' /bin/sed -i'' -e 's|INSTALL_PREFIX|/usr|g ; s|INSTALL_EXEC_PREFIX|/usr|g' /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin/pnetcdf-config chmod +x /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin/pnetcdf-config make[5]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils' make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src/utils' make[1]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/src' Making install in man make[1]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/man' make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/man' make[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man3' /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c -m 644 pnetcdf.3 pnetcdf_f77.3 pnetcdf_f90.3 '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man/man3' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/man' make[1]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/man' Making install in examples make[1]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples' Making install in C make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/C' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/C' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/C' Making install in CXX make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/CXX' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/CXX' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/CXX' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/CXX' Making install in F77 make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/F77' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/F77' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/F77' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/F77' Making install in F90 make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/F90' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/F90' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/F90' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/F90' Making install in tutorial make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/tutorial' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/tutorial' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/tutorial' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples/tutorial' make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples' make[1]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/examples' Making install in benchmarks make[1]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks' Making install in C make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks/C' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks/C' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks/C' Making install in FLASH-IO make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks/FLASH-IO' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks/FLASH-IO' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks/FLASH-IO' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks/FLASH-IO' make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks' make[1]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/benchmarks' Making install in test make[1]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test' Making install in common make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/common' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/common' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/common' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/common' Making install in C make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/C' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/C' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/C' Making install in fandc make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/fandc' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/fandc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/fandc' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/fandc' Making install in nc_test make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nc_test' make install-am make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nc_test' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nc_test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nc_test' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nc_test' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nc_test' Making install in cdf_format make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/cdf_format' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/cdf_format' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/cdf_format' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/cdf_format' Making install in header make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/header' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/header' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/header' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/header' Making install in testcases make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/testcases' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/testcases' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/testcases' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/testcases' Making install in nonblocking make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nonblocking' make install-am make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nonblocking' make[4]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nonblocking' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nonblocking' make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nonblocking' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nonblocking' Making install in CXX make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/CXX' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/CXX' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/CXX' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/CXX' Making install in nf_test make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nf_test' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nf_test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nf_test' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nf_test' Making install in nf90_test make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nf90_test' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nf90_test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nf90_test' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/nf90_test' Making install in F90 make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/F90' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/F90' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/F90' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test/F90' make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test' make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test' make[1]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2/test' make[1]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2' make[2]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2' make[2]: Nothing to be done for 'install-exec-am'. make install-data-hook make[3]: Entering directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2' +----------------------------------------------------------------------------+ | | PnetCDF has been successfully installed under | /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr | | * PnetCDF header files have been installed in | /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/include | * PnetCDF library files have been installed in | /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/lib | * PnetCDF utility programs have been installed in | /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/bin | * PnetCDF man pages have been installed in | /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/share/man | | To compile your PnetCDF programs, please add the following to the command | line, so the compiler can find the PnetCDF header files: | -I/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/include | | Add the following line to link your program to PnetCDF library: | -L/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/lib -lpnetcdf | | Add the following to your run-time environment variable LD_LIBRARY_PATH, | when linking your executable with the PnetCDF shared libraries. | /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image/usr/lib | | | PnetCDF is jointly developed by a team at Northwestern University and | Argonne National Laboratory. | | Visit PnetCDF project web site for more information | https://parallel-netcdf.github.io | +----------------------------------------------------------------------------+ make[3]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2' make[2]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2' make[1]: Leaving directory '/var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/work/pnetcdf-1.12.2' >>> Completed installing sys-cluster/parallel-netcdf-1.12.2 into /var/tmp/portage/sys-cluster/parallel-netcdf-1.12.2/image * Final size of build directory: 55764 KiB (54.4 MiB) * Final size of installed tree: 8060 KiB ( 7.8 MiB) * QA Notice: Files built without respecting CFLAGS have been detected * Please include the following list of files in your report: * /usr/bin/cdfdiff * /usr/bin/ncvalidator * /usr/bin/pnetcdf_version * /usr/bin/ncoffsets * QA Notice: Files built without respecting LDFLAGS have been detected * Please include the following list of files in your report: * /usr/bin/cdfdiff * /usr/bin/ncoffsets * /usr/bin/ncvalidator * /usr/bin/pnetcdf_version strip: x86_64-pc-linux-gnu-strip --strip-unneeded -N __gentoo_check_ldflags__ -R .comment -R .GCC.command.line -R .note.gnu.gold-version /usr/bin/ncmpigen /usr/lib64/libpnetcdf.so.4.0.2 /usr/bin/ncmpidump /usr/bin/ncmpidiff /usr/bin/cdfdiff /usr/bin/ncvalidator /usr/bin/pnetcdf_version /usr/bin/ncoffsets >>> Done.