sys-cluster:mpich-3.0.4:20210923-205133.log

sys-cluster:mpich-3.0.4:20210923-205133.log (text/plain), 32.58 KB, created by Toralf Förster on 2021-09-24 13:55:38 UTC

 * Package:    sys-cluster/mpich-3.0.4
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 cxx elibc_glibc fortran kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
 * Using following Fortran compiler:
 *   F77: x86_64-pc-linux-gnu-gfortran
 *   FC:  x86_64-pc-linux-gnu-gfortran
>>> Unpacking source...
>>> Unpacking mpich-3.0.4.tar.gz to /var/tmp/portage/sys-cluster/mpich-3.0.4/work
>>> Source unpacked in /var/tmp/portage/sys-cluster/mpich-3.0.4/work
>>> Preparing source in /var/tmp/portage/sys-cluster/mpich-3.0.4/work/mpich-3.0.4 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sys-cluster/mpich-3.0.4/work/mpich-3.0.4 ...
 * econf: updating mpich-3.0.4/confdb/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpich-3.0.4/confdb/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpich-3.0.4/src/armci/m4/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpich-3.0.4/src/armci/m4/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpich-3.0.4/src/mpi/romio/confdb/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpich-3.0.4/src/mpi/romio/confdb/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpich-3.0.4/src/mpl/confdb/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpich-3.0.4/src/mpl/confdb/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpich-3.0.4/src/openpa/confdb/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpich-3.0.4/src/openpa/confdb/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpich-3.0.4/src/pm/hydra/mpl/confdb/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpich-3.0.4/src/pm/hydra/mpl/confdb/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpich-3.0.4/src/pm/hydra/confdb/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpich-3.0.4/src/pm/hydra/confdb/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpich-3.0.4/test/mpi/confdb/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpich-3.0.4/test/mpi/confdb/config.sub with /usr/share/gnuconfig/config.sub
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --libdir=/usr/lib64 --enable-shared --with-thread-package=none --enable-threads=single --sysconfdir=/etc/mpich --docdir=/usr/share/doc/mpich-3.0.4 --with-pm=hydra --disable-mpe --disable-fast --enable-smpcoll --enable-versioning --with-hwloc-prefix=/usr --disable-romio --enable-cxx --enable-f77 --enable-fc
configure: loading site script /usr/share/config.site
Configuring MPICH version 3.0.4 with  '--prefix=/usr' '--build=x86_64-pc-linux-gnu' '--host=x86_64-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--disable-dependency-tracking' '--disable-silent-rules' '--libdir=/usr/lib64' '--enable-shared' '--with-thread-package=none' '--enable-threads=single' '--sysconfdir=/etc/mpich' '--docdir=/usr/share/doc/mpich-3.0.4' '--with-pm=hydra' '--disable-mpe' '--disable-fast' '--enable-smpcoll' '--enable-versioning' '--with-hwloc-prefix=/usr' '--disable-romio' '--enable-cxx' '--enable-f77' '--enable-fc' 'build_alias=x86_64-pc-linux-gnu' 'host_alias=x86_64-pc-linux-gnu' 'MPICHLIB_CFLAGS=-pipe -march=native -fno-diagnostics-color -O2' 'MPICHLIB_CPPFLAGS=' 'MPICHLIB_CXXFLAGS=-pipe -march=native -fno-diagnostics-color -O2' 'MPICHLIB_FFLAGS=-pipe -march=native -fno-diagnostics-color -O2' 'MPICHLIB_FCFLAGS=-pipe -march=native -fno-diagnostics-color -O2' 'MPICHLIB_LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' 'F77=x86_64-pc-linux-gnu-gfortran' 'FC=x86_64-pc-linux-gnu-gfortran'
Running on system: Linux localhost 5.14.7 #6 SMP Wed Sep 22 13:17:23 CEST 2021 x86_64 AMD Ryzen 9 5950X 16-Core Processor AuthenticAMD GNU/Linux
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configure: RUNNING PREREQ FOR ch3:nemesis
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configure: ===== configuring src/mpl =====
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr'  '--build=x86_64-pc-linux-gnu' '--host=x86_64-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--disable-dependency-tracking' '--disable-silent-rules' '--libdir=/usr/lib64' '--enable-shared' '--with-thread-package=none' '--enable-threads=single' '--sysconfdir=/etc/mpich' '--docdir=/usr/share/doc/mpich-3.0.4' '--with-pm=hydra' '--disable-mpe' '--disable-fast' '--enable-smpcoll' '--enable-versioning' '--with-hwloc-prefix=/usr' '--disable-romio' '--enable-cxx' '--enable-f77' '--enable-fc' 'build_alias=x86_64-pc-linux-gnu' 'host_alias=x86_64-pc-linux-gnu' 'MPICHLIB_CFLAGS=-pipe -march=native -fno-diagnostics-color -O2' 'MPICHLIB_CPPFLAGS=' 'MPICHLIB_CXXFLAGS=-pipe -march=native -fno-diagnostics-color -O2' 'MPICHLIB_FFLAGS=-pipe -march=native -fno-diagnostics-color -O2' 'MPICHLIB_FCFLAGS=-pipe -march=native -fno-diagnostics-color -O2' 'MPICHLIB_LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' 'F77=x86_64-pc-linux-gnu-gfortran' 'FC=x86_64-pc-linux-gnu-gfortran' --cache-file=/dev/null --srcdir=.
configure: loading site script /usr/share/config.site
checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for x86_64-pc-linux-gnu-icc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking the archiver (x86_64-pc-linux-gnu-ar) interface... ar
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
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checking for a sed that does not truncate output... /bin/sed
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checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
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checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make supports nested variables... yes
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configure: creating ./config.status
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config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines
configure: ===== done with src/mpl configure =====
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configure: ===== configuring src/openpa =====
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr' --with-atomic-primitives=auto_allow_emulation '--build=x86_64-pc-linux-gnu' '--host=x86_64-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--disable-dependency-tracking' '--disable-silent-rules' '--libdir=/usr/lib64' '--enable-shared' '--with-thread-package=none' '--enable-threads=single' '--sysconfdir=/etc/mpich' '--docdir=/usr/share/doc/mpich-3.0.4' '--with-pm=hydra' '--disable-mpe' '--disable-fast' '--enable-smpcoll' '--enable-versioning' '--with-hwloc-prefix=/usr' '--disable-romio' '--enable-cxx' '--enable-f77' '--enable-fc' 'build_alias=x86_64-pc-linux-gnu' 'host_alias=x86_64-pc-linux-gnu' 'MPICHLIB_CFLAGS=-pipe -march=native -fno-diagnostics-color -O2' 'MPICHLIB_CPPFLAGS=' 'MPICHLIB_CXXFLAGS=-pipe -march=native -fno-diagnostics-color -O2' 'MPICHLIB_FFLAGS=-pipe -march=native -fno-diagnostics-color -O2' 'MPICHLIB_FCFLAGS=-pipe -march=native -fno-diagnostics-color -O2' 'MPICHLIB_LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' 'F77=x86_64-pc-linux-gnu-gfortran' 'FC=x86_64-pc-linux-gnu-gfortran' --cache-file=/dev/null --srcdir=.
configure: loading site script /usr/share/config.site
checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking the archiver (x86_64-pc-linux-gnu-ar) interface... ar
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-pc-linux-gnu-ar... (cached) x86_64-pc-linux-gnu-ar
checking for archiver @FILE support... @
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for sysroot... no
checking for x86_64-pc-linux-gnu-mt... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make supports nested variables... yes
checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none
checking whether to enable assertions... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking atomic.h usability... no
checking atomic.h presence... no
checking for atomic.h... no
checking intrin.h usability... no
checking intrin.h presence... no
checking for intrin.h... no
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking for an ANSI C-conforming const... yes
checking for pthread_create in -lpthread... yes
checking for pthread_yield... yes
checking if 100 threads can be run at once... yes
checking size of void *... 8
checking size of int... 4
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking if compiler rejects bogus asm statements... yes
checking for support for gcc x86/x86_64 primitives... yes
checking for support for gcc x86 primitives for pre-Pentium 4... yes
checking for support for gcc ia64 primitives... no
checking for support for gcc PowerPC atomics... no
checking for support for gcc ARM atomics... no
checking for support for gcc SiCortex atomics... no
checking for support for gcc atomic intrinsics... yes
checking for support for Windows NT atomic intrinsics... no
checking for support for Sun atomic operations library... no
checking whether to enable strict fairness checks... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating openpa.pc
config.status: creating src/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing src/opa_config.h commands
config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
configure: ===== done with src/openpa configure =====
sourcing /var/tmp/portage/sys-cluster/mpich-3.0.4/work/mpich-3.0.4/src/pm/hydra/mpichprereq
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking for type of weak symbol alias support... pragma weak
checking whether __attribute__ ((weak)) allowed... yes
checking whether __attribute__ ((weak_import)) allowed... yes
checking whether __attribute__((weak,alias(...))) allowed... no
checking for multiple weak symbol support... yes
checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf)
checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v
checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran...  -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.3.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.3.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.3.0/../../.. -lgfortran -lm -lquadmath
checking whether x86_64-pc-linux-gnu-gfortran accepts the FLIBS found by autoconf... yes
checking whether x86_64-pc-linux-gnu-gcc links with FLIBS found by autoconf... yes
checking whether Fortran 77 and C objects are compatible... yes
checking for linker for Fortran main program... Use Fortran to link programs
checking for Fortran 77 name mangling... lower uscore
checking for libraries to link Fortran main with C stdio routines... none
checking whether Fortran init will work with C... yes
checking for extension for Fortran 90 programs... f90
checking whether the Fortran 90 compiler (x86_64-pc-linux-gnu-gfortran  -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0) works... yes
checking whether the Fortran 90 compiler (x86_64-pc-linux-gnu-gfortran  -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0) is a cross-compiler... no
checking whether Fortran 90 compiler works with Fortran 77 compiler... yes
checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf)
checking whether Fortran 77 accepts ! for comments... yes
checking for include directory flag for Fortran... -I
checking for Fortran 77 flag for library directories... -L
checking whether Fortran 77 compiler processes .F files with C preprocessor... yes
checking whether x86_64-pc-linux-gnu-gfortran allows mismatched arguments... no
configure: error: The Fortran compiler x86_64-pc-linux-gnu-gfortran will not compile files that call
the same routine with arguments of different types.

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sys-cluster/mpich-3.0.4/work/mpich-3.0.4/config.log
 * ERROR: sys-cluster/mpich-3.0.4::gentoo failed (configure phase):
 *   econf failed
 * 
 * Call stack:
 *               ebuild.sh, line  127:  Called src_configure
 *             environment, line 2120:  Called econf '--enable-shared' '--with-thread-package=none' '--enable-threads=single' '--sysconfdir=/etc/mpich' '--docdir=/usr/share/doc/mpich-3.0.4' '--with-pm=hydra' '--disable-mpe' '--disable-fast' '--enable-smpcoll' '--enable-versioning' '--with-hwloc-prefix=/usr' '--disable-romio' '--enable-cxx' '--enable-f77' '--enable-fc'
 *        phase-helpers.sh, line  711:  Called __helpers_die 'econf failed'
 *   isolated-functions.sh, line  112:  Called die
 * The specific snippet of code:
 *   		die "$@"
 * 
 * If you need support, post the output of `emerge --info '=sys-cluster/mpich-3.0.4::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sys-cluster/mpich-3.0.4::gentoo'`.
 * The complete build log is located at '/var/log/portage/sys-cluster:mpich-3.0.4:20210923-205133.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sys-cluster/mpich-3.0.4/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sys-cluster/mpich-3.0.4/temp/environment'.
 * Working directory: '/var/tmp/portage/sys-cluster/mpich-3.0.4/work/mpich-3.0.4'
 * S: '/var/tmp/portage/sys-cluster/mpich-3.0.4/work/mpich-3.0.4'