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Gentoo's Bugzilla – Attachment 73868 Details for
Bug 114089
An ebuild for the science program: fastDNAml
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The ebuild.
fastDNAml-1.2.2p.ebuild (text/plain), 1.21 KB, created by
Brady Catherman
on 2005-11-30 18:49:32 UTC
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Description:
The ebuild.
Filename:
MIME Type:
Creator:
Brady Catherman
Created:
2005-11-30 18:49:32 UTC
Size:
1.21 KB
patch
obsolete
># Copyright 1999-2005 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 > >DESCRIPTION="\ >fastDNAml [Olsen et.al. 1994, based on Felsenstein 1981] computes the >likelihood of various phylogenetic trees, starting with aligned DNA sequences >from a number of species. More documentation is available." >HOMEPAGE="http://geta.life.uiuc.edu/%7Egary/programs/fastDNAml.html" >SRC_URI="http://www.indiana.edu/%7Erac/hpc/fastDNAml/fastDNAml_${PV}.tar" >LICENSE="Unknown" >IUSE="mpi" >SLOT="0" >KEYWORDS="~x86" > >DEPEND="mpi? ( virtual/mpi )" > > > >S=${WORKDIR}/${PN}_${PV}/ > >src_compile() { >echo ${S}/src > cd ${S}/src || die > emake -f Makefile.LINUX serial || die "Compile failed" > > if use mpi; then > sed -i -e "s/#MPI_ROOT =/ MPI_ROOT=\/usr/" Makefile.LINUX || die > sed -i -e "s/MPICC = \$(CC)/MPICC=mpicc/" Makefile.LINUX || die > sed -i -e "s/MPI_CLIBS = -lmpich/MPI_CLIBS=/" Makefile.LINUX || die > emake -f Makefile.LINUX mpi || die "Compile failed" > fi >} > >src_install() { > cd ${S}/src || die > dobin fastDNAml || die > if use mpi; then > dobin mpi_dnaml_mon mpi_fastDNAml mpi_foreman mpi_worker || die > fi > > dodir /usr/share/doc/${P}/scripts || die > cp -rp ${S}/scripts/* ${D}/usr/share/doc/${P}/scripts || die >} >
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bug 114089
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73868
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159817